Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Forward (+)

37198902 .. 37202930

Gene Structure 4029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024576

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCGCCCAAGGATCCCAAGCAAGGCGGAGGATTCTTCGCCTCCATAGCTTCCACTTTCAGCGCCGTCACCAAATCCGTCAACGGATTAGTCGGGTACGAGGGCTTGGAGGTTATTAATCCAGATGGAGGCACGGATGATGTTCATGAAGAAGCCAGTAAAGGAAGATGGAAGCAGGAGGATCGGGATGGTTACTGGAAGGTAATGCAGAAGTATGTAGGTGCTGACGTCACATCAATGGTGACCCTTCCAGTTCTTATTTTTGAGCCAATGACTATGCTACAGAAAATGGCAGAGTTGATGGAATACTCCCATCTGTTAGATCTGGCAGATGAATGTGAGGATCCATACATGCAATTGGTATATTCTGCATCTTTCTTTATATCTGTTTACTATGCCTTTCAACGCACCTGGAAGCCATTCAACCCCATTCTTGGTGAGACTTACGAAATGGTTAATCATGGTGGCATTACATTTGTAGCAGAACAGGTTAGTCATCACCCTCCTATGAGTGCTGCTCATGCAGAAAATGAGCATTTCATATATGACATAACTTCAAAGGTGAAAACCAAATTTCTAGGGAACTCGATTGATATCTATCCAGTTGGAAGGACACGTTTGACCCTCAAGAAGTCTGGTGTAGTCTTAGATTTGGCACCCCCGCCAACAAAAGTCAACAACTTAATTTTTGGAAGGACATGGGTTGATTCACCAGGAGATATGGTTTTGACCAATTTGACCACAGGGGATAAAGTTGTGCTATATTTTCAACCATGCGGCTGGTTTGGAGCTGGTCGCTATGAAGTTGATGGATATGTTTATAATTCGACCGAGGAACCCAAGATATTGATGACTGGAAAGTGGAATGAGTCAATGAGTTATCAACCCTGTGACGCAGAAGGTGAACCACTTCCTGGCACTGAATTGAAAGAGTCTTGGAAAGTTGCTGAAGTTCCAGAAAATGACAAATTCCAGTACACATATTTTGCGCATAAAATAAACAGCTTCGACACTGCTCCTAAGAAGTTACTGGCATCAGATTCTCGGTTGCGTCCTGATAGGTTTGCACTGGAGCAGGGTGACATACCTAAAGCTGGCTTTGAAAAGAGCAGTCTGGAGGAGAGGCAGAGAGCTGAAAAGAAAAATAGAGAGGAAAAGGGTCATGAGTTCACTCCAAGATGGTTTGACAAAACAGATGAAATCTGTCCCACAACTTGGGATGACTTGCAAGTGTACCAATACAATGGCAAATACACCGAACACCGGGCCGCAATAGATGACTCGGACAGCGTTGAAGCAATCGACGTCAAATCAATAGAGTTCAACCCCTGGCAATACGAGAATTTGGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

452

Amino Acids

51.2

Weight (kDa)

4.94

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	65 - 422	1.9e-112	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	822
AatII	GACGTC	2 cut(s)	231, 1308
Acc16I	TGCGCA	1 cut(s)	990
AccB1I	GGYRCC	2 cut(s)	4, 655
AccB7I	CCANNNNNTGG	2 cut(s)	914, 1215
AciI	CCGC	4 cut(s)	27, 662, 777, 1269
AclWI	GGATC	5 cut(s)	8, 21, 189, 338, 351
AcsI	RAATTY	3 cut(s)	572, 968, 1342
AcuI	CTGAAG	1 cut(s)	969
AcyI	GRCGYC	3 cut(s)	5, 228, 1305
AfaI	GTAC	3 cut(s)	98, 977, 1235
AfiI	CCNNNNNNNGG	7 cut(s)	23, 128, 434, 914, 1094, 1215, 1263
AflIII	ACRYGT	1 cut(s)	614
AgsI	TTSAA	8 cut(s)	404, 424, 558, 770, 928, 1103, 1295, 1324
AjnI	CCWGG	4 cut(s)	410, 712, 913, 1328
AluBI	AGCT	5 cut(s)	50, 791, 1005, 1094, 1133
AluI	AGCT	5 cut(s)	50, 791, 1005, 1094, 1133
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	5 cut(s)	8, 21, 189, 338, 351
AoxI	GGCC	1 cut(s)	1266
ApeKI	GCWGC	2 cut(s)	515, 1349
ApoI	RAATTY	3 cut(s)	572, 968, 1342
AseI	ATTAAT	1 cut(s)	117
Asp700I	GAANNNNTTC	2 cut(s)	419, 909
AspLEI	GCGC	3 cut(s)	7, 65, 991
AspS9I	GGNCC	1 cut(s)	1266
AsuC2I	CCSGG	1 cut(s)	1265
AsuHPI	GGTGA	8 cut(s)	61, 253, 449, 491, 574, 702, 914, 1091
BamHI	GGATCC	2 cut(s)	13, 343
BanI	GGYRCC	2 cut(s)	4, 655
BbvI	GCAGC	2 cut(s)	502, 1336
BccI	CCATC	7 cut(s)	119, 162, 182, 295, 321, 803, 1173
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	4 cut(s)	412, 714, 915, 1330
BcnI	CCSGG	1 cut(s)	1265
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	1 cut(s)	281
BfoI	RGCGCY	2 cut(s)	8, 66
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	4 cut(s)	516, 778, 1269, 1350
BlsI	GCNGC	4 cut(s)	517, 779, 1270, 1351
Bme1390I	CCNGG	5 cut(s)	412, 714, 915, 1265, 1330
BmgT120I	GGNCC	1 cut(s)	1266
BmiI	GGNNCC	5 cut(s)	6, 15, 345, 657, 837
BmrFI	CCNGG	5 cut(s)	412, 714, 915, 1265, 1330
BmsI	GCATC	2 cut(s)	380, 1043
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	2 cut(s)	1091, 1136
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	1265
BsaBI	GATNNNNATC	2 cut(s)	593, 597
BsaHI	GRCGYC	3 cut(s)	5, 228, 1305
BsaJI	CCNNGG	3 cut(s)	9, 831, 1328
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 128, 434, 914, 1094, 1215, 1263
Bse1I	ACTGG	8 cut(s)	156, 200, 251, 602, 859, 973, 1035, 1074
Bse8I	GATNNNNATC	2 cut(s)	593, 597
BseBI	CCWGG	4 cut(s)	412, 714, 915, 1330
BseDI	CCNNGG	3 cut(s)	9, 831, 1328
BseGI	GGATG	3 cut(s)	142, 193, 1225
BseJI	GATNNNNATC	2 cut(s)	593, 597
BseLI	CCNNNNNNNGG	7 cut(s)	23, 128, 434, 914, 1094, 1215, 1263
BseNI	ACTGG	8 cut(s)	156, 200, 251, 602, 859, 973, 1035, 1074
BseRI	GAGGAG	1 cut(s)	1133
BseXI	GCAGC	2 cut(s)	502, 1336
Bsh1285I	CGRYCG	1 cut(s)	831
BshFI	GGCC	1 cut(s)	1268
BshNI	GGYRCC	2 cut(s)	4, 655
BsiEI	CGRYCG	1 cut(s)	831
BsiSI	CCGG	1 cut(s)	1264
BslFI	GGGAC	1 cut(s)	1191
BslI	CCNNNNNNNGG	7 cut(s)	23, 128, 434, 914, 1094, 1215, 1263
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	1191
BsnI	GGCC	1 cut(s)	1268
Bsp143I	GATC	4 cut(s)	13, 181, 322, 343
BspACI	CCGC	4 cut(s)	27, 662, 777, 1269
BspANI	GGCC	1 cut(s)	1268
BspHI	TCATGA	2 cut(s)	145, 1162
BspLI	GGNNCC	5 cut(s)	6, 15, 345, 657, 837
BspPI	GGATC	5 cut(s)	8, 21, 189, 338, 351
BspT107I	GGYRCC	2 cut(s)	4, 655
BsrI	ACTGG	8 cut(s)	156, 200, 251, 602, 859, 973, 1035, 1074
BssECI	CCNNGG	3 cut(s)	9, 831, 1328
BssMI	GATC	4 cut(s)	13, 181, 322, 343
BssNI	GRCGYC	3 cut(s)	5, 228, 1305
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	4 cut(s)	412, 714, 915, 1330
BstACI	GRCGYC	3 cut(s)	5, 228, 1305
BstC8I	GCNNGC	1 cut(s)	1096
BstDEI	CTNAG	2 cut(s)	646, 1020
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	142, 193, 1225
BstH2I	RGCGCY	2 cut(s)	8, 66
BstHHI	GCGC	3 cut(s)	7, 65, 991
BstKTI	GATC	4 cut(s)	16, 184, 325, 346
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	4 cut(s)	13, 181, 322, 343
BstMCI	CGRYCG	1 cut(s)	831
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 521
BstNI	CCWGG	4 cut(s)	412, 714, 915, 1330
BstNSI	RCATGY	1 cut(s)	355
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	5 cut(s)	410, 712, 913, 1263, 1328
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	502, 1336
BstX2I	RGATCY	3 cut(s)	13, 322, 343
BstXI	CCANNNNNNTGG	2 cut(s)	780, 1244
BstYI	RGATCY	3 cut(s)	13, 322, 343
BsuRI	GGCC	1 cut(s)	1268
BtsCI	GGATG	3 cut(s)	142, 193, 1225
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	3 cut(s)	918, 1011, 1067
Cac8I	GCNNGC	1 cut(s)	1096
CciI	TCATGA	2 cut(s)	145, 1162
CfoI	GCGC	3 cut(s)	7, 65, 991
Cfr13I	GGNCC	1 cut(s)	1266
CseI	GACGC	2 cut(s)	902, 1040
Csp6I	GTAC	3 cut(s)	97, 976, 1234
CviAII	CATG	7 cut(s)	146, 352, 461, 521, 699, 774, 1163
CviQI	GTAC	3 cut(s)	97, 976, 1234
DdeI	CTNAG	2 cut(s)	646, 1020
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	15, 183, 324, 345
DpnII	GATC	4 cut(s)	13, 181, 322, 343
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	595
Eco57I	CTGAAG	1 cut(s)	969
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRII	CCWGG	4 cut(s)	410, 712, 913, 1328
EcoRV	GATATC	1 cut(s)	595
EcoT14I	CCWWGG	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	7 cut(s)	149, 355, 464, 524, 702, 777, 1166
FaqI	GGGAC	1 cut(s)	1191
FatI	CATG	7 cut(s)	145, 351, 460, 520, 698, 773, 1162
FauI	CCCGC	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	516, 778, 1269, 1350
FokI	GGATG	3 cut(s)	149, 200, 1232
Fsp4HI	GCNGC	4 cut(s)	516, 778, 1269, 1350
FspBI	CTAG	1 cut(s)	578
FspI	TGCGCA	1 cut(s)	990
GlaI	GCGC	3 cut(s)	6, 64, 990
GluI	GCNGC	4 cut(s)	516, 778, 1269, 1350
GsuI	CTGGAG	2 cut(s)	1091, 1136
HaeII	RGCGCY	2 cut(s)	8, 66
HaeIII	GGCC	1 cut(s)	1268
HapII	CCGG	1 cut(s)	1264
HgaI	GACGC	2 cut(s)	902, 1040
HhaI	GCGC	3 cut(s)	7, 65, 991
Hin1I	GRCGYC	3 cut(s)	5, 228, 1305
Hin1II	CATG	7 cut(s)	149, 355, 464, 524, 702, 777, 1166
Hin6I	GCGC	3 cut(s)	5, 63, 989
HinP1I	GCGC	3 cut(s)	5, 63, 989
HincII	GTYRAC	2 cut(s)	82, 676
HindII	GTYRAC	2 cut(s)	82, 676
HinfI	GANTC	6 cut(s)	33, 707, 869, 932, 1040, 1280
HpaII	CCGG	1 cut(s)	1264
HphI	GGTGA	8 cut(s)	61, 253, 449, 491, 574, 702, 914, 1091
Hpy166II	GTNNAC	7 cut(s)	82, 391, 676, 905, 978, 1170, 1234
Hpy188I	TCNGA	2 cut(s)	1039, 1285
Hpy188III	TCNNGA	8 cut(s)	122, 146, 185, 628, 956, 1055, 1115, 1163
Hpy8I	GTNNAC	7 cut(s)	82, 391, 676, 905, 978, 1170, 1234
Hpy99I	CGWCG	1 cut(s)	1307
HpyAV	CCTTC	5 cut(s)	193, 257, 603, 687, 893
HpyCH4IV	ACGT	3 cut(s)	228, 616, 1305
HpyCH4V	TGCA	6 cut(s)	208, 355, 371, 524, 1067, 1228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 521
HpyF3I	CTNAG	2 cut(s)	646, 1020
HpySE526I	ACGT	3 cut(s)	228, 616, 1305
Hsp92I	GRCGYC	3 cut(s)	5, 228, 1305
Hsp92II	CATG	7 cut(s)	149, 355, 464, 524, 702, 777, 1166
HspAI	GCGC	3 cut(s)	5, 63, 989
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	13, 181, 322, 343
LmnI	GCTCC	3 cut(s)	788, 1021, 1072
Lsp1109I	GCAGC	2 cut(s)	502, 1336
LweI	GCATC	2 cut(s)	380, 1043
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	3 cut(s)	228, 616, 1305
MaeIII	GTNAC	7 cut(s)	67, 191, 229, 241, 890, 1026, 1079
MalI	GATC	4 cut(s)	15, 183, 324, 345
MboI	GATC	4 cut(s)	13, 181, 322, 343
MboII	GAAGA	3 cut(s)	28, 161, 177
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	3 cut(s)	13, 322, 343
MluCI	AATT	8 cut(s)	356, 572, 684, 733, 823, 923, 968, 1342
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	878, 941, 1274
MmeI	TCCRAC	1 cut(s)	586
MroXI	GAANNNNTTC	2 cut(s)	419, 909
MseI	TTAA	3 cut(s)	117, 456, 683
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	1 cut(s)	1264
MspR9I	CCNGG	5 cut(s)	412, 714, 915, 1265, 1330
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	4 cut(s)	412, 714, 915, 1330
MwoI	GCNNNNNNNGC	2 cut(s)	47, 521
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	1265
NdeII	GATC	4 cut(s)	13, 181, 322, 343
NlaIII	CATG	7 cut(s)	149, 355, 464, 524, 702, 777, 1166
NlaIV	GGNNCC	5 cut(s)	6, 15, 345, 657, 837
NmuCI	GTSAC	5 cut(s)	67, 229, 241, 890, 1079
NsbI	TGCGCA	1 cut(s)	990
NspI	RCATGY	1 cut(s)	355
PagI	TCATGA	2 cut(s)	145, 1162
PdmI	GAANNNNTTC	2 cut(s)	419, 909
PfeI	GAWTC	3 cut(s)	33, 707, 1040
PflMI	CCANNNNNTGG	2 cut(s)	914, 1215
PkrI	GCNGC	4 cut(s)	517, 779, 1270, 1351
PleI	GAGTC	3 cut(s)	877, 940, 1274
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	877, 940, 1274
PshBI	ATTAAT	1 cut(s)	117
PsiI	TTATAA	1 cut(s)	822
Psp6I	CCWGG	4 cut(s)	410, 712, 913, 1328
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	4 cut(s)	410, 712, 913, 1328
PspN4I	GGNNCC	5 cut(s)	6, 15, 345, 657, 837
PspPI	GGNCC	1 cut(s)	1266
PsuI	RGATCY	3 cut(s)	13, 322, 343
RsaI	GTAC	3 cut(s)	98, 977, 1235
RsaNI	GTAC	3 cut(s)	97, 976, 1234
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	117, 456, 683
SatI	GCNGC	4 cut(s)	516, 778, 1269, 1350
Sau3AI	GATC	4 cut(s)	13, 181, 322, 343
Sau96I	GGNCC	1 cut(s)	1266
SchI	GAGTC	3 cut(s)	878, 941, 1274
ScrFI	CCNGG	5 cut(s)	412, 714, 915, 1265, 1330
SfaNI	GCATC	2 cut(s)	380, 1043
SfcI	CTRYAG	1 cut(s)	281
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	8 cut(s)	356, 572, 684, 733, 823, 923, 968, 1342
SsiI	CCGC	4 cut(s)	27, 662, 777, 1269
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	5 cut(s)	410, 712, 913, 1263, 1328
StyI	CCWWGG	1 cut(s)	9
TaiI	ACGT	3 cut(s)	231, 619, 1308
TaqI	TCGA	4 cut(s)	587, 827, 1008, 1302
TaqII	GACCGA	1 cut(s)	845
TasI	AATT	8 cut(s)	356, 572, 684, 733, 823, 923, 968, 1342
TatI	WGTACW	1 cut(s)	975
TauI	GCSGC	2 cut(s)	780, 1271
TfiI	GAWTC	3 cut(s)	33, 707, 1040
Tru1I	TTAA	3 cut(s)	117, 456, 683
Tru9I	TTAA	3 cut(s)	117, 456, 683
TscAI	CASTG	3 cut(s)	925, 1018, 1074
TseFI	GTSAC	5 cut(s)	67, 229, 241, 890, 1079
TseI	GCWGC	2 cut(s)	515, 1349
Tsp45I	GTSAC	5 cut(s)	67, 229, 241, 890, 1079
TspDTI	ATGAA	6 cut(s)	134, 162, 348, 529, 816, 1212
TspGWI	ACGGA	3 cut(s)	67, 99, 149
TspRI	CASTG	3 cut(s)	925, 1018, 1074
Van91I	CCANNNNNTGG	2 cut(s)	914, 1215
VspI	ATTAAT	1 cut(s)	117
XapI	RAATTY	3 cut(s)	572, 968, 1342
XceI	RCATGY	1 cut(s)	355
XmnI	GAANNNNTTC	2 cut(s)	419, 909
XspI	CTAG	1 cut(s)	578
ZraI	GACGTC	2 cut(s)	229, 1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.