Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Forward (+)

6378364 .. 6380417

Gene Structure 2054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0081800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCAGTACATACTTGTGAGCTTTTTGATATTTTGCATATCTTCATCTCATTTAAGCGACATTGTATATGGAAAAAAAACATATGATGTTCTTAGTTATGGTGCTGTTGGAGATGGAAAAGCTGATGATTCAAAAGCTTTTGTAAGAGCGTGGGAAGATTTATGTGGAGCATCTGAAACTTATGATGTACCAACACTTCAGATACCGGCGGGAAAAACATTCTTATTGCAGCCTACGAAATTTAAAGGTCCATGCAAATCAAAAAGTGTTCATGTTCAGGTGTTGGGGAAGGTGGTGGCACCCAAAACACCGGATGCTTGGAAACAGTGTGAATCAAATTACTGGCTTTCCTTTTCAAATGTGGCAAACCTCAGAATGAGTGGCGGTTCAGGAATAATCGACGGCCAGGGTTCATCTTGGTGGAGCAACGCTAATGAACAAAAGCTTTACATAGATGAGAAGAAGAAGTGTCAACGACCAAAGGCTCTACACTTCCATGGATGTCATAATCTCCTACTAACTGGACTTACTCATGTAAATAGTCCAAAAGGTCATATTAGTATAAGCAGCTGCAGCTATGTATATGTCGCCAACCTCACTATAACTGCACCTGAAGAGAGTCCAAATACCGATGGAATTGACATCTCAAACTCAAACCATGTCAACATTCATGCCTCTTATATTGGAACCGGTGATGATTGTATAGCTATCAATTCTGGCTGTTCTAATATCAACATTACCAACATTGCATGTGTCCCAGGCCATGGAATTAGCGTGGGAAGCTTGGGAGAAAATGGGGCTTACGCAACAGTAGAAAATGTATCTGTGAAAAATTGTAGTTTCAGTAGAACTCAAAATGGAGTAAGAATCAAGACATGGCAGGGTGGATCTGGGTACGCCAAGAATATAACCTTTGAACAAATCACACTTCATGCCACTAAAAACCCAATTATCATCGACCAATATTATTGTAATGGAGCTCACAATTGTAAAAACAAGACCTCAGCTGTCAAGGTGAGTGATGTGAGATACAGGAATATCCAAGGTACTTCAGCAAAAAAGGAGGCGATAAGATTAGACTGCAATCAGTTTTCGGGGTGTCGCAACATTGTAATGGAGCACATCAACATCACCTCGGATGTTCCTGGTAATAAGGGGATACAGGCATCATGCTACAACATCAATGGAATTTCTAAAAGCACCGTGCCGAGAGTACTTTGCCTGCAGTCCAAACTGGTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

414

Amino Acids

44.95

Weight (kDa)

8.78

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	65 - 395	4.8e-94	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	764
AciI	CCGC	2 cut(s)	209, 384
AclWI	GGATC	1 cut(s)	895
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	239, 1188
AcuI	CTGAAG	3 cut(s)	182, 633, 1035
AfaI	GTAC	5 cut(s)	8, 189, 896, 1048, 1215
AfiI	CCNNNNNNNGG	1 cut(s)	764
AgeI	ACCGGT	1 cut(s)	689
AgsI	TTSAA	3 cut(s)	132, 357, 917
AjnI	CCWGG	3 cut(s)	405, 757, 1144
Alw21I	GWGCWC	2 cut(s)	982, 1122
AlwI	GGATC	1 cut(s)	895
AoxI	GGCC	2 cut(s)	403, 760
ApeKI	GCWGC	4 cut(s)	229, 567, 570, 573
ApoI	RAATTY	2 cut(s)	239, 1188
AsiGI	ACCGGT	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	248, 1237
AsuHPI	GGTGA	3 cut(s)	704, 1027, 1123
AvaII	GGWCC	2 cut(s)	248, 1237
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	982
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
Bbv12I	GWGCWC	2 cut(s)	982, 1122
BbvCI	CCTCAGC	1 cut(s)	1003
BbvI	GCAGC	4 cut(s)	241, 557, 579, 585
BccI	CCATC	2 cut(s)	107, 626
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	3 cut(s)	407, 759, 1146
BciVI	GTATCC	1 cut(s)	1152
BfmI	CTRYAG	2 cut(s)	571, 1223
BfuI	GTATCC	1 cut(s)	1152
BisI	GCNGC	4 cut(s)	230, 568, 571, 574
BlsI	GCNGC	4 cut(s)	231, 569, 572, 575
BmcAI	AGTACT	1 cut(s)	1215
Bme1390I	CCNGG	3 cut(s)	407, 759, 1146
Bme18I	GGWCC	2 cut(s)	248, 1237
BmgT120I	GGNCC	2 cut(s)	248, 1237
BmiI	GGNNCC	2 cut(s)	300, 688
BmrFI	CCNGG	3 cut(s)	407, 759, 1146
BmsI	GCATC	3 cut(s)	179, 304, 1175
Bpu10I	CCTNAGC	1 cut(s)	1003
BsaJI	CCNNGG	6 cut(s)	406, 496, 757, 763, 1042, 1134
BsaWI	WCCGGW	2 cut(s)	310, 689
Bsc4I	CCNNNNNNNGG	1 cut(s)	764
Bse118I	RCCGGY	2 cut(s)	205, 689
Bse1I	ACTGG	4 cut(s)	347, 526, 1239, 1240
Bse3DI	GCAATG	1 cut(s)	744
BseBI	CCWGG	3 cut(s)	407, 759, 1146
BseDI	CCNNGG	6 cut(s)	406, 496, 757, 763, 1042, 1134
BseGI	GGATG	3 cut(s)	319, 506, 1144
BseLI	CCNNNNNNNGG	1 cut(s)	764
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	2 cut(s)	385, 1017
BseNI	ACTGG	4 cut(s)	347, 526, 1239, 1240
BseXI	GCAGC	4 cut(s)	241, 557, 579, 585
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	2 cut(s)	405, 762
BshNI	GGYRCC	1 cut(s)	298
BshTI	ACCGGT	1 cut(s)	689
BsiHKAI	GWGCWC	2 cut(s)	982, 1122
BsiSI	CCGG	3 cut(s)	206, 311, 690
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	740
BsnI	GGCC	2 cut(s)	405, 762
Bsp1286I	GDGCHC	2 cut(s)	982, 1122
Bsp143I	GATC	1 cut(s)	887
Bsp19I	CCATGG	2 cut(s)	496, 763
BspACI	CCGC	2 cut(s)	209, 384
BspANI	GGCC	2 cut(s)	405, 762
BspCNI	CTCAG	2 cut(s)	384, 1016
BspLI	GGNNCC	2 cut(s)	300, 688
BspMAI	CTGCAG	2 cut(s)	575, 1227
BspPI	GGATC	1 cut(s)	895
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	2 cut(s)	205, 689
BsrI	ACTGG	4 cut(s)	347, 526, 1239, 1240
BssAI	RCCGGY	2 cut(s)	205, 689
BssECI	CCNNGG	6 cut(s)	406, 496, 757, 763, 1042, 1134
BssMI	GATC	1 cut(s)	887
BssT1I	CCWWGG	3 cut(s)	496, 763, 1042
Bst2UI	CCWGG	3 cut(s)	407, 759, 1146
Bst4CI	ACNGT	3 cut(s)	327, 811, 1204
Bst6I	CTCTTC	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	1223
BstDEI	CTNAG	3 cut(s)	92, 371, 1003
BstDSI	CCRYGG	2 cut(s)	496, 763
BstF5I	GGATG	3 cut(s)	319, 506, 1144
BstKTI	GATC	1 cut(s)	890
BstMBI	GATC	1 cut(s)	887
BstMWI	GCNNNNNNNGC	2 cut(s)	573, 780
BstNI	CCWGG	3 cut(s)	407, 759, 1146
BstNSI	RCATGY	1 cut(s)	753
BstSCI	CCNGG	3 cut(s)	405, 757, 1144
BstSFI	CTRYAG	2 cut(s)	571, 1223
BstV1I	GCAGC	4 cut(s)	241, 557, 579, 585
BstX2I	RGATCY	1 cut(s)	887
BstYI	RGATCY	1 cut(s)	887
BsuI	GTATCC	1 cut(s)	1152
BsuRI	GGCC	2 cut(s)	405, 762
BtgI	CCRYGG	2 cut(s)	496, 763
BtsCI	GGATG	3 cut(s)	319, 506, 1144
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	1223
Cfr10I	RCCGGY	2 cut(s)	205, 689
Cfr13I	GGNCC	2 cut(s)	248, 1237
Csp6I	GTAC	5 cut(s)	7, 188, 895, 1047, 1214
CspAI	ACCGGT	1 cut(s)	689
CviQI	GTAC	5 cut(s)	7, 188, 895, 1047, 1214
DdeI	CTNAG	3 cut(s)	92, 371, 1003
DpnI	GATC	1 cut(s)	889
DpnII	GATC	1 cut(s)	887
DraI	TTTAAA	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Ecl136II	GAGCTC	1 cut(s)	980
Eco130I	CCWWGG	3 cut(s)	496, 763, 1042
Eco24I	GRGCYC	1 cut(s)	982
Eco47I	GGWCC	2 cut(s)	248, 1237
Eco53kI	GAGCTC	1 cut(s)	980
Eco57I	CTGAAG	3 cut(s)	182, 633, 1035
EcoICRI	GAGCTC	1 cut(s)	980
EcoRII	CCWGG	3 cut(s)	405, 757, 1144
EcoT14I	CCWWGG	3 cut(s)	496, 763, 1042
EcoT38I	GRGCYC	1 cut(s)	982
ErhI	CCWWGG	3 cut(s)	496, 763, 1042
FaqI	GGGAC	1 cut(s)	740
FauI	CCCGC	1 cut(s)	202
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	4 cut(s)	230, 568, 571, 574
FokI	GGATG	3 cut(s)	326, 513, 1151
FriOI	GRGCYC	1 cut(s)	982
Fsp4HI	GCNGC	4 cut(s)	230, 568, 571, 574
GluI	GCNGC	4 cut(s)	230, 568, 571, 574
HaeIII	GGCC	2 cut(s)	405, 762
HapII	CCGG	3 cut(s)	206, 311, 690
HincII	GTYRAC	2 cut(s)	473, 664
HindII	GTYRAC	2 cut(s)	473, 664
HindIII	AAGCTT	3 cut(s)	135, 443, 781
HinfI	GANTC	4 cut(s)	128, 332, 619, 867
HpaII	CCGG	3 cut(s)	206, 311, 690
HphI	GGTGA	3 cut(s)	704, 1027, 1123
Hpy166II	GTNNAC	2 cut(s)	473, 664
Hpy188I	TCNGA	4 cut(s)	175, 201, 374, 1138
Hpy188III	TCNNGA	2 cut(s)	390, 871
Hpy8I	GTNNAC	2 cut(s)	473, 664
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	3 cut(s)	327, 811, 1204
HpyCH4V	TGCA	9 cut(s)	4, 36, 229, 255, 573, 608, 749, 1083, 1225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	573, 780
HpyF3I	CTNAG	3 cut(s)	92, 371, 1003
Kzo9I	GATC	1 cut(s)	887
LmnI	GCTCC	4 cut(s)	167, 423, 977, 1117
Lsp1109I	GCAGC	4 cut(s)	241, 557, 579, 585
LweI	GCATC	3 cut(s)	179, 304, 1175
MalI	GATC	1 cut(s)	889
MboI	GATC	1 cut(s)	887
MboII	GAAGA	5 cut(s)	33, 167, 472, 475, 626
MfeI	CAATTG	1 cut(s)	985
MflI	RGATCY	1 cut(s)	887
MhlI	GDGCHC	2 cut(s)	982, 1122
MluCI	AATT	9 cut(s)	239, 337, 636, 712, 768, 832, 948, 985, 1188
MlyI	GAGTC	1 cut(s)	628
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	6 cut(s)	380, 605, 685, 1012, 1057, 1144
MseI	TTAA	2 cut(s)	53, 243
MslI	CAYNNNNRTG	4 cut(s)	14, 418, 495, 1112
MspA1I	CMGCKG	2 cut(s)	570, 1007
MspI	CCGG	3 cut(s)	206, 311, 690
MspR9I	CCNGG	3 cut(s)	407, 759, 1146
MunI	CAATTG	1 cut(s)	985
MvaI	CCWGG	3 cut(s)	407, 759, 1146
MwoI	GCNNNNNNNGC	2 cut(s)	573, 780
NcoI	CCATGG	2 cut(s)	496, 763
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	1 cut(s)	887
NlaIV	GGNNCC	2 cut(s)	300, 688
NmeAIII	GCCGAG	1 cut(s)	1233
NspI	RCATGY	1 cut(s)	753
PfeI	GAWTC	3 cut(s)	128, 332, 867
PflMI	CCANNNNNTGG	1 cut(s)	764
PinAI	ACCGGT	1 cut(s)	689
PkrI	GCNGC	4 cut(s)	231, 569, 572, 575
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	982
Psp6I	CCWGG	3 cut(s)	405, 757, 1144
PspGI	CCWGG	3 cut(s)	405, 757, 1144
PspN4I	GGNNCC	2 cut(s)	300, 688
PspPI	GGNCC	2 cut(s)	248, 1237
PstI	CTGCAG	2 cut(s)	575, 1227
PsuI	RGATCY	1 cut(s)	887
PvuII	CAGCTG	2 cut(s)	570, 1007
RsaI	GTAC	5 cut(s)	8, 189, 896, 1048, 1215
RsaNI	GTAC	5 cut(s)	7, 188, 895, 1047, 1214
RseI	CAYNNNNRTG	4 cut(s)	14, 418, 495, 1112
SacI	GAGCTC	1 cut(s)	982
SaqAI	TTAA	2 cut(s)	53, 243
SatI	GCNGC	4 cut(s)	230, 568, 571, 574
Sau3AI	GATC	1 cut(s)	887
Sau96I	GGNCC	2 cut(s)	248, 1237
ScaI	AGTACT	1 cut(s)	1215
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	3 cut(s)	407, 759, 1146
SduI	GDGCHC	2 cut(s)	982, 1122
SfaNI	GCATC	3 cut(s)	179, 304, 1175
SfcI	CTRYAG	2 cut(s)	571, 1223
SinI	GGWCC	2 cut(s)	248, 1237
SmiMI	CAYNNNNRTG	4 cut(s)	14, 418, 495, 1112
Sse9I	AATT	9 cut(s)	239, 337, 636, 712, 768, 832, 948, 985, 1188
SsiI	CCGC	2 cut(s)	209, 384
SspI	AATATT	1 cut(s)	965
SstI	GAGCTC	1 cut(s)	982
StyD4I	CCNGG	3 cut(s)	405, 757, 1144
StyI	CCWWGG	3 cut(s)	496, 763, 1042
TaaI	ACNGT	3 cut(s)	327, 811, 1204
TaqI	TCGA	2 cut(s)	399, 957
TasI	AATT	9 cut(s)	239, 337, 636, 712, 768, 832, 948, 985, 1188
TatI	WGTACW	2 cut(s)	6, 1213
TfiI	GAWTC	3 cut(s)	128, 332, 867
Tru1I	TTAA	2 cut(s)	53, 243
Tru9I	TTAA	2 cut(s)	53, 243
TscAI	CASTG	1 cut(s)	332
TseI	GCWGC	4 cut(s)	229, 567, 570, 573
TspDTI	ATGAA	6 cut(s)	33, 260, 402, 450, 659, 920
TspRI	CASTG	1 cut(s)	332
Van91I	CCANNNNNTGG	1 cut(s)	764
VpaK11BI	GGWCC	2 cut(s)	248, 1237
XapI	RAATTY	2 cut(s)	239, 1188
XceI	RCATGY	1 cut(s)	753
ZrmI	AGTACT	1 cut(s)	1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.