Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Forward (+)

36823223 .. 36828129

Gene Structure 4907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCGCCCAAGGATCCCAAGCAAGGCGGAGGCTTCTTCGCTTCCATAGCTTCCACTTTCAGCGCCGTCACCAAATCCGTCAACGGATTAGTCGGGTACGAGGGCTTGGAGGTTATCAATCCAGATGGAGGAACGGATGATGTTCATGAAGAAGCCAGTAAAGGAAGATGGAAGCAGGAGGATCGGGATGGTTACTGGAAGGTAATGCAGAAGTATGTAGGTGCTGACGTCACATCAATGGTGACCCTTCCCGTTCTTATTTTTGAGCCAATGACTATGCTACAGAAAATGGCAGAGTTGATGGAATACTCCCATCTGTTAGATCTGGCAGATGAATGTGAGGATCCATACATGCAATTGGTATATTCTGCATCTTTCTTTATATCTGTTTACTATGCCTTTCAACGCACCTGGAAGCCATTCAACCCCATTCTTGGTGAGACTTACGAAATGGTAAATCATGGTGGCATTACATTTGTAGCAGAACAGGACACGTTTGACGCTCAAGAGAAGTCGGGTGTAGTCTTAGATTTGGCACCCCCGCCAACAAAAGTCAACAACTTAATTTTTGGAAGGACATGGGTTGATTCACCAGGAGATATGGTTTTGACCAATTTGACCACAGGGGATAAAGTTGTGCTATATTTTCAACCATGCGGCTGGTTTGGAGCTGGTCGCTATGAAGTTGATGGATATGTTTATAATTCGACTGAAGAACCCAAGATATTGATGACTGGAAAGTGGAATGAGTCAATGAGTTATCAACCCTGTGACGCAGAAGGTGAACCACTTCCTGGCACTGAATTGAAAGAGTCTTGGAAAGTTGCTGAAGTTCCAGAAAATGACAAATTCCAGTACACATATTTTGCACATAAAATAAACAGCTTCGACACTGCTCCTAAGAAGTTACTGGCATCAGATTCTCGGTTGCGTCCTGATAGGTTTGCACTGGAGCAGGGTGACATACCTAAAGCTGGCTTTGAAAAGAGCAGTCTGGAGGAGAGGCAGAGAGCTGAAAAGAAAAATAGAGAGGAAAAGGGTCATGAGTTCACTCCAAGATGGTTTGACAAAACAGATGAAATCTGTCCCACAACTTGGGATGACTTGCAAGTGTACCAATACAATGGCAAATACACCGAACACCGGGCCGCAATAGATGACTCGGACAGCGTTGAAGCAATCGACGTCAAATCAATAGAGTTCAACCCCTGGCAATACGAGAATTTGGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

411

Amino Acids

46.71

Weight (kDa)

4.63

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	65 - 163	1.4e-31	Oxysterol-binding protein
Oxysterol_BP	PF01237	173 - 382	4e-51	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
AatII	GACGTC	2 cut(s)	231, 1188
AccB1I	GGYRCC	2 cut(s)	4, 535
AccB7I	CCANNNNNTGG	2 cut(s)	794, 1095
AciI	CCGC	4 cut(s)	27, 542, 657, 1149
AclWI	GGATC	5 cut(s)	8, 21, 189, 338, 351
AcsI	RAATTY	2 cut(s)	848, 1222
AcuI	CTGAAG	2 cut(s)	732, 849
AcyI	GRCGYC	3 cut(s)	5, 228, 1185
AfaI	GTAC	3 cut(s)	98, 857, 1115
AfiI	CCNNNNNNNGG	7 cut(s)	23, 128, 434, 794, 974, 1095, 1143
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	7 cut(s)	404, 424, 650, 808, 983, 1175, 1204
AjnI	CCWGG	4 cut(s)	410, 592, 793, 1208
AluBI	AGCT	5 cut(s)	50, 671, 885, 974, 1013
AluI	AGCT	5 cut(s)	50, 671, 885, 974, 1013
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	5 cut(s)	8, 21, 189, 338, 351
AoxI	GGCC	1 cut(s)	1146
ApeKI	GCWGC	1 cut(s)	1229
ApoI	RAATTY	2 cut(s)	848, 1222
Asp700I	GAANNNNTTC	2 cut(s)	419, 789
AspLEI	GCGC	2 cut(s)	7, 65
AspS9I	GGNCC	1 cut(s)	1146
AsuC2I	CCSGG	1 cut(s)	1145
AsuHPI	GGTGA	6 cut(s)	61, 253, 449, 582, 794, 971
BamHI	GGATCC	2 cut(s)	13, 343
BanI	GGYRCC	2 cut(s)	4, 535
BbvI	GCAGC	1 cut(s)	1216
BccI	CCATC	7 cut(s)	119, 162, 182, 295, 321, 683, 1053
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	4 cut(s)	412, 594, 795, 1210
BcnI	CCSGG	1 cut(s)	1145
BcoDI	GTCTC	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	281
BfoI	RGCGCY	2 cut(s)	8, 66
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	3 cut(s)	658, 1149, 1230
BlsI	GCNGC	3 cut(s)	659, 1150, 1231
Bme1390I	CCNGG	5 cut(s)	412, 594, 795, 1145, 1210
BmgT120I	GGNCC	1 cut(s)	1146
BmiI	GGNNCC	4 cut(s)	6, 15, 345, 537
BmrFI	CCNGG	5 cut(s)	412, 594, 795, 1145, 1210
BmsI	GCATC	2 cut(s)	380, 923
BpmI	CTGGAG	2 cut(s)	971, 1016
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	1145
BsaHI	GRCGYC	3 cut(s)	5, 228, 1185
BsaJI	CCNNGG	2 cut(s)	9, 1208
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 128, 434, 794, 974, 1095, 1143
Bse1I	ACTGG	6 cut(s)	156, 200, 739, 853, 915, 954
BseBI	CCWGG	4 cut(s)	412, 594, 795, 1210
BseDI	CCNNGG	2 cut(s)	9, 1208
BseGI	GGATG	3 cut(s)	142, 193, 1105
BseLI	CCNNNNNNNGG	7 cut(s)	23, 128, 434, 794, 974, 1095, 1143
BseNI	ACTGG	6 cut(s)	156, 200, 739, 853, 915, 954
BseRI	GAGGAG	1 cut(s)	1013
BseXI	GCAGC	1 cut(s)	1216
BshFI	GGCC	1 cut(s)	1148
BshNI	GGYRCC	2 cut(s)	4, 535
BsiSI	CCGG	1 cut(s)	1144
BslFI	GGGAC	1 cut(s)	1071
BslI	CCNNNNNNNGG	7 cut(s)	23, 128, 434, 794, 974, 1095, 1143
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	1071
BsnI	GGCC	1 cut(s)	1148
Bsp143I	GATC	4 cut(s)	13, 181, 322, 343
BspACI	CCGC	4 cut(s)	27, 542, 657, 1149
BspANI	GGCC	1 cut(s)	1148
BspHI	TCATGA	2 cut(s)	145, 1042
BspLI	GGNNCC	4 cut(s)	6, 15, 345, 537
BspPI	GGATC	5 cut(s)	8, 21, 189, 338, 351
BspT107I	GGYRCC	2 cut(s)	4, 535
BsrI	ACTGG	6 cut(s)	156, 200, 739, 853, 915, 954
BssECI	CCNNGG	2 cut(s)	9, 1208
BssMI	GATC	4 cut(s)	13, 181, 322, 343
BssNI	GRCGYC	3 cut(s)	5, 228, 1185
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	4 cut(s)	412, 594, 795, 1210
BstACI	GRCGYC	3 cut(s)	5, 228, 1185
BstC8I	GCNNGC	1 cut(s)	976
BstDEI	CTNAG	2 cut(s)	526, 900
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	142, 193, 1105
BstH2I	RGCGCY	2 cut(s)	8, 66
BstHHI	GCGC	2 cut(s)	7, 65
BstKTI	GATC	4 cut(s)	16, 184, 325, 346
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	4 cut(s)	13, 181, 322, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	4 cut(s)	412, 594, 795, 1210
BstNSI	RCATGY	1 cut(s)	355
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	5 cut(s)	410, 592, 793, 1143, 1208
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	1216
BstX2I	RGATCY	3 cut(s)	13, 322, 343
BstXI	CCANNNNNNTGG	2 cut(s)	660, 1124
BstYI	RGATCY	3 cut(s)	13, 322, 343
BsuRI	GGCC	1 cut(s)	1148
BtsCI	GGATG	3 cut(s)	142, 193, 1105
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	3 cut(s)	798, 891, 947
Cac8I	GCNNGC	1 cut(s)	976
CciI	TCATGA	2 cut(s)	145, 1042
CfoI	GCGC	2 cut(s)	7, 65
Cfr13I	GGNCC	1 cut(s)	1146
CseI	GACGC	3 cut(s)	509, 782, 920
Csp6I	GTAC	3 cut(s)	97, 856, 1114
CviAII	CATG	6 cut(s)	146, 352, 461, 579, 654, 1043
CviQI	GTAC	3 cut(s)	97, 856, 1114
DdeI	CTNAG	2 cut(s)	526, 900
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	15, 183, 324, 345
DpnII	GATC	4 cut(s)	13, 181, 322, 343
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	732, 849
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRII	CCWGG	4 cut(s)	410, 592, 793, 1208
EcoT14I	CCWWGG	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	6 cut(s)	149, 355, 464, 582, 657, 1046
FaqI	GGGAC	1 cut(s)	1071
FatI	CATG	6 cut(s)	145, 351, 460, 578, 653, 1042
FauI	CCCGC	1 cut(s)	549
Fnu4HI	GCNGC	3 cut(s)	658, 1149, 1230
FokI	GGATG	3 cut(s)	149, 200, 1112
Fsp4HI	GCNGC	3 cut(s)	658, 1149, 1230
GlaI	GCGC	2 cut(s)	6, 64
GluI	GCNGC	3 cut(s)	658, 1149, 1230
GsuI	CTGGAG	2 cut(s)	971, 1016
HaeII	RGCGCY	2 cut(s)	8, 66
HaeIII	GGCC	1 cut(s)	1148
HapII	CCGG	1 cut(s)	1144
HgaI	GACGC	3 cut(s)	509, 782, 920
HhaI	GCGC	2 cut(s)	7, 65
Hin1I	GRCGYC	3 cut(s)	5, 228, 1185
Hin1II	CATG	6 cut(s)	149, 355, 464, 582, 657, 1046
Hin6I	GCGC	2 cut(s)	5, 63
HinP1I	GCGC	2 cut(s)	5, 63
HincII	GTYRAC	2 cut(s)	82, 556
HindII	GTYRAC	2 cut(s)	82, 556
HinfI	GANTC	5 cut(s)	587, 749, 812, 920, 1160
HpaII	CCGG	1 cut(s)	1144
HphI	GGTGA	6 cut(s)	61, 253, 449, 582, 794, 971
Hpy166II	GTNNAC	7 cut(s)	82, 391, 556, 785, 858, 1050, 1114
Hpy188I	TCNGA	2 cut(s)	919, 1165
Hpy188III	TCNNGA	8 cut(s)	122, 146, 185, 506, 836, 935, 995, 1043
Hpy8I	GTNNAC	7 cut(s)	82, 391, 556, 785, 858, 1050, 1114
Hpy99I	CGWCG	1 cut(s)	1187
HpyAV	CCTTC	4 cut(s)	193, 257, 567, 773
HpyCH4IV	ACGT	3 cut(s)	228, 494, 1185
HpyCH4V	TGCA	6 cut(s)	208, 355, 371, 869, 947, 1108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	526, 900
HpySE526I	ACGT	3 cut(s)	228, 494, 1185
Hsp92I	GRCGYC	3 cut(s)	5, 228, 1185
Hsp92II	CATG	6 cut(s)	149, 355, 464, 582, 657, 1046
HspAI	GCGC	2 cut(s)	5, 63
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	13, 181, 322, 343
LmnI	GCTCC	3 cut(s)	668, 901, 952
Lsp1109I	GCAGC	1 cut(s)	1216
LweI	GCATC	2 cut(s)	380, 923
MaeII	ACGT	3 cut(s)	228, 494, 1185
MaeIII	GTNAC	7 cut(s)	67, 191, 229, 241, 770, 906, 959
MalI	GATC	4 cut(s)	15, 183, 324, 345
MboI	GATC	4 cut(s)	13, 181, 322, 343
MboII	GAAGA	4 cut(s)	28, 161, 177, 725
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	3 cut(s)	13, 322, 343
MluCI	AATT	7 cut(s)	356, 564, 613, 703, 803, 848, 1222
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	758, 821, 1154
MnlI	CCTC	9 cut(s)	23, 94, 103, 122, 172, 334, 991, 996, 1024
MroXI	GAANNNNTTC	2 cut(s)	419, 789
MseI	TTAA	1 cut(s)	563
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	1 cut(s)	1144
MspR9I	CCNGG	5 cut(s)	412, 594, 795, 1145, 1210
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	4 cut(s)	412, 594, 795, 1210
MwoI	GCNNNNNNNGC	1 cut(s)	47
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	1145
NdeII	GATC	4 cut(s)	13, 181, 322, 343
NlaIII	CATG	6 cut(s)	149, 355, 464, 582, 657, 1046
NlaIV	GGNNCC	4 cut(s)	6, 15, 345, 537
NmuCI	GTSAC	5 cut(s)	67, 229, 241, 770, 959
NspI	RCATGY	1 cut(s)	355
PagI	TCATGA	2 cut(s)	145, 1042
PdmI	GAANNNNTTC	2 cut(s)	419, 789
PfeI	GAWTC	2 cut(s)	587, 920
PflMI	CCANNNNNTGG	2 cut(s)	794, 1095
PkrI	GCNGC	3 cut(s)	659, 1150, 1231
PleI	GAGTC	3 cut(s)	757, 820, 1154
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	757, 820, 1154
PsiI	TTATAA	1 cut(s)	702
Psp6I	CCWGG	4 cut(s)	410, 592, 793, 1208
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	4 cut(s)	410, 592, 793, 1208
PspN4I	GGNNCC	4 cut(s)	6, 15, 345, 537
PspPI	GGNCC	1 cut(s)	1146
PsuI	RGATCY	3 cut(s)	13, 322, 343
RsaI	GTAC	3 cut(s)	98, 857, 1115
RsaNI	GTAC	3 cut(s)	97, 856, 1114
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	3 cut(s)	658, 1149, 1230
Sau3AI	GATC	4 cut(s)	13, 181, 322, 343
Sau96I	GGNCC	1 cut(s)	1146
SchI	GAGTC	3 cut(s)	758, 821, 1154
ScrFI	CCNGG	5 cut(s)	412, 594, 795, 1145, 1210
SfaNI	GCATC	2 cut(s)	380, 923
SfcI	CTRYAG	1 cut(s)	281
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	7 cut(s)	356, 564, 613, 703, 803, 848, 1222
SsiI	CCGC	4 cut(s)	27, 542, 657, 1149
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	5 cut(s)	410, 592, 793, 1143, 1208
StyI	CCWWGG	1 cut(s)	9
TaiI	ACGT	3 cut(s)	231, 497, 1188
TaqI	TCGA	3 cut(s)	707, 888, 1182
TasI	AATT	7 cut(s)	356, 564, 613, 703, 803, 848, 1222
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	2 cut(s)	660, 1151
TfiI	GAWTC	2 cut(s)	587, 920
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TscAI	CASTG	3 cut(s)	805, 898, 954
TseFI	GTSAC	5 cut(s)	67, 229, 241, 770, 959
TseI	GCWGC	1 cut(s)	1229
Tsp45I	GTSAC	5 cut(s)	67, 229, 241, 770, 959
TspDTI	ATGAA	5 cut(s)	134, 162, 348, 696, 1092
TspGWI	ACGGA	3 cut(s)	67, 99, 149
TspRI	CASTG	3 cut(s)	805, 898, 954
Van91I	CCANNNNNTGG	2 cut(s)	794, 1095
XapI	RAATTY	2 cut(s)	848, 1222
XceI	RCATGY	1 cut(s)	355
XmnI	GAANNNNTTC	2 cut(s)	419, 789
ZraI	GACGTC	2 cut(s)	229, 1186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.