Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Forward (+)

14787153 .. 14791660

Gene Structure 4508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g11840.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGCTTCCACTTTGACCAATCTCGGTAGCGCCATGACCAAATCCGTCAACGGCATAATGGGTTATGAGGGGCTGGAGGTTATCAATCCAGATGGAGGGCAGGAAGATCTCGAAGACGAAGCAAGGAAAGGAAGATGGAAGCAGGAGGATCGGGATGGTTACTGGAAGATAATGCAGAAGTATATTGGCTCTGACATCACATCAATGGTGACCCTTCCAGTACTTATTTTCGAGCCAATGACCATGCTGCAGAAAATGGCAGAGATTACGGAATACTCCCATCTGTTAGATCTTGCTGATGAATGTGAGGATCCATACATGAGATCAGTATATGTTGCATCCTTTTTCATATCTGTCTACTTTGCCTTTCAACGAACCTGGAAGCCATTCAATCCAATACTTGGCGAGACTTATGAAATGGTTAATCATGGGGGCGTCACGTTTTTATCAGAACAGGTCAGTCATCACCCTCCTATGAGTGCTGGTCATGCTGAAAATGAGCATTTTATTTATGACATAACGTCGAAGGTGAAAACCAAATTTTTGGGGAACTCACTTGATATCTATCCAGTCGGAAGAACACGTTTGACCCTTAAAAGAGATGGTGTAGAATTTGAATTGGCGCCCCCTCCAACAAAAGTTAACAACTTAATTTTTGGACGAACATGGGTCGATTCACCAGGAGATATGGTTTTGACCAATTTGACCACAGGGGACAAAGTTGTGCTGTATTTCCAACCATGCGGCTGGTTTGGATCTGGTCGCTATGAAGTAGATGGATATGTTTATAATTCTGCTGAGGATCCTAAAATATTGATGACTGGAAAATGGAACGAGTCAATGAGTTATCAACCCTGTGACTCAGAAGGGGAGCCACTTCCTGGCACTGAACTGAAAGAGGTTTGGAGAGTTGCTGATGTTCCAGAAAATGACAAATTCCAGTATACACATTTTGCACACAAAATAAACAGCTTCGACACTGCTCCTAAGAAATTATTGGCATCAGATTCTCGCCTGCGTCCTGATAGATACGCACTGGAGCAGGGGGACCTATCCAAAGCCGGTTTTGAAAAGAGCAGCTTGGAGGAAAGGCAGAGAGCTGAGAAGAAAAATCGACTGGAAAAAGGACATGAGTTTACTCCAAGGTGGTTTGACAAAACAGATGAAGTCTTCAAGACAACATGGGATGACATGGAAGTGTACCGTTACAATGGAAAGTACACAGAACACCGGGCTGCAATAGACAACTCAGACAGCGTCGAAGCGATTGACGTCAAATCAATAGAGTTCAACCCCTGGCAATACGAGGATTTGGCGACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

442

Amino Acids

50.57

Weight (kDa)

4.95

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	789
AatII	GACGTC	1 cut(s)	1275
AccB1I	GGYRCC	1 cut(s)	622
AccB7I	CCANNNNNTGG	2 cut(s)	401, 881
AccI	GTMKAC	2 cut(s)	357, 944
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	6 cut(s)	156, 305, 318, 763, 797, 810
AcsI	RAATTY	3 cut(s)	539, 611, 935
AcyI	GRCGYC	3 cut(s)	435, 623, 1272
AfaI	GTAC	3 cut(s)	222, 1202, 1220
AfiI	CCNNNNNNNGG	3 cut(s)	95, 401, 881
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	6 cut(s)	371, 391, 617, 1070, 1174, 1291
AhdI	GACNNNNNGTC	1 cut(s)	520
AjnI	CCWGG	4 cut(s)	377, 679, 880, 1295
AluBI	AGCT	3 cut(s)	972, 1080, 1100
AluI	AGCT	3 cut(s)	972, 1080, 1100
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	6 cut(s)	156, 305, 318, 763, 797, 810
ApeKI	GCWGC	3 cut(s)	247, 1077, 1235
ApoI	RAATTY	3 cut(s)	539, 611, 935
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	2 cut(s)	32, 625
AspS9I	GGNCC	1 cut(s)	1048
AsuC2I	CCSGG	1 cut(s)	1232
AsuHPI	GGTGA	4 cut(s)	220, 458, 541, 669
AvaII	GGWCC	1 cut(s)	1048
BamHI	GGATCC	2 cut(s)	310, 802
BanI	GGYRCC	1 cut(s)	622
BbsI	GAAGAC	2 cut(s)	120, 1162
BbvCI	CCTCAGC	1 cut(s)	798
BbvI	GCAGC	3 cut(s)	234, 1089, 1222
BccI	CCATC	6 cut(s)	86, 129, 149, 288, 596, 770
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	4 cut(s)	379, 681, 882, 1297
BcnI	CCSGG	1 cut(s)	1232
BcoDI	GTCTC	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	248
BfoI	RGCGCY	2 cut(s)	33, 626
BglII	AGATCT	2 cut(s)	106, 289
BisI	GCNGC	4 cut(s)	248, 745, 1078, 1236
BlsI	GCNGC	4 cut(s)	249, 746, 1079, 1237
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	5 cut(s)	379, 681, 882, 1232, 1297
Bme18I	GGWCC	1 cut(s)	1048
BmeRI	GACNNNNNGTC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	1048
BmiI	GGNNCC	5 cut(s)	312, 624, 804, 873, 1049
BmrFI	CCNGG	5 cut(s)	379, 681, 882, 1232, 1297
BmsI	GCATC	2 cut(s)	347, 1010
BpiI	GAAGAC	2 cut(s)	120, 1162
BpmI	CTGGAG	2 cut(s)	95, 1058
Bpu10I	CCTNAGC	1 cut(s)	798
BpuMI	CCSGG	1 cut(s)	1232
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	3 cut(s)	435, 623, 1272
BsaJI	CCNNGG	2 cut(s)	1142, 1295
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 401, 881
Bse118I	RCCGGY	1 cut(s)	1061
Bse1I	ACTGG	7 cut(s)	167, 218, 569, 826, 940, 1041, 1122
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	4 cut(s)	379, 681, 882, 1297
BseDI	CCNNGG	2 cut(s)	1142, 1295
BseGI	GGATG	3 cut(s)	160, 338, 1192
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	3 cut(s)	95, 401, 881
BseMII	CTCAG	4 cut(s)	789, 876, 1092, 1263
BseNI	ACTGG	7 cut(s)	167, 218, 569, 826, 940, 1041, 1122
BseXI	GCAGC	3 cut(s)	234, 1089, 1222
BshNI	GGYRCC	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	1062, 1231
BslFI	GGGAC	2 cut(s)	728, 1061
BslI	CCNNNNNNNGG	3 cut(s)	95, 401, 881
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	2 cut(s)	728, 1061
Bsp143I	GATC	7 cut(s)	106, 148, 289, 310, 323, 755, 802
BspACI	CCGC	1 cut(s)	744
BspCNI	CTCAG	4 cut(s)	790, 875, 1093, 1262
BspLI	GGNNCC	5 cut(s)	312, 624, 804, 873, 1049
BspMAI	CTGCAG	1 cut(s)	252
BspPI	GGATC	6 cut(s)	156, 305, 318, 763, 797, 810
BspT107I	GGYRCC	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	1061
BsrI	ACTGG	7 cut(s)	167, 218, 569, 826, 940, 1041, 1122
BssAI	RCCGGY	1 cut(s)	1061
BssECI	CCNNGG	2 cut(s)	1142, 1295
BssMI	GATC	7 cut(s)	106, 148, 289, 310, 323, 755, 802
BssNAI	GTATAC	1 cut(s)	945
BssNI	GRCGYC	3 cut(s)	435, 623, 1272
BssT1I	CCWWGG	1 cut(s)	1142
Bst1107I	GTATAC	1 cut(s)	945
Bst2UI	CCWGG	4 cut(s)	379, 681, 882, 1297
Bst4CI	ACNGT	1 cut(s)	1205
BstACI	GRCGYC	3 cut(s)	435, 623, 1272
BstC8I	GCNNGC	1 cut(s)	1016
BstDEI	CTNAG	5 cut(s)	798, 862, 987, 1101, 1249
BstEII	GGTNACC	1 cut(s)	208
BstF5I	GGATG	3 cut(s)	160, 338, 1192
BstH2I	RGCGCY	2 cut(s)	33, 626
BstHHI	GCGC	2 cut(s)	32, 625
BstKTI	GATC	7 cut(s)	109, 151, 292, 313, 326, 758, 805
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	7 cut(s)	106, 148, 289, 310, 323, 755, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	4 cut(s)	379, 681, 882, 1297
BstPI	GGTNACC	1 cut(s)	208
BstSCI	CCNGG	5 cut(s)	377, 679, 880, 1230, 1295
BstSFI	CTRYAG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	234, 1089, 1222
BstV2I	GAAGAC	2 cut(s)	120, 1162
BstX2I	RGATCY	5 cut(s)	106, 289, 310, 755, 802
BstXI	CCANNNNNNTGG	2 cut(s)	544, 747
BstYI	RGATCY	5 cut(s)	106, 289, 310, 755, 802
BstZ17I	GTATAC	1 cut(s)	945
BtsCI	GGATG	3 cut(s)	160, 338, 1192
BtsI	GCAGTG	1 cut(s)	978
BtsIMutI	CAGTG	3 cut(s)	885, 978, 1034
Cac8I	GCNNGC	1 cut(s)	1016
CfoI	GCGC	2 cut(s)	32, 625
Cfr10I	RCCGGY	1 cut(s)	1061
Cfr13I	GGNCC	1 cut(s)	1048
CseI	GACGC	3 cut(s)	424, 1007, 1246
Csp6I	GTAC	3 cut(s)	221, 1201, 1219
CviQI	GTAC	3 cut(s)	221, 1201, 1219
DdeI	CTNAG	5 cut(s)	798, 862, 987, 1101, 1249
DinI	GGCGCC	1 cut(s)	624
DpnI	GATC	7 cut(s)	108, 150, 291, 312, 325, 757, 804
DpnII	GATC	7 cut(s)	106, 148, 289, 310, 323, 755, 802
DriI	GACNNNNNGTC	1 cut(s)	520
Eam1105I	GACNNNNNGTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	1142
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	1048
Eco91I	GGTNACC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	1048
EcoO65I	GGTNACC	1 cut(s)	208
EcoRII	CCWGG	4 cut(s)	377, 679, 880, 1295
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	1142
EgeI	GGCGCC	1 cut(s)	624
EheI	GGCGCC	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	1142
FalI	AAGNNNNNCTT	2 cut(s)	1064, 1096
FaqI	GGGAC	2 cut(s)	728, 1061
FblI	GTMKAC	2 cut(s)	357, 944
Fnu4HI	GCNGC	4 cut(s)	248, 745, 1078, 1236
FokI	GGATG	3 cut(s)	167, 325, 1199
Fsp4HI	GCNGC	4 cut(s)	248, 745, 1078, 1236
GlaI	GCGC	2 cut(s)	31, 624
GluI	GCNGC	4 cut(s)	248, 745, 1078, 1236
GsuI	CTGGAG	2 cut(s)	95, 1058
HaeII	RGCGCY	2 cut(s)	33, 626
HapII	CCGG	2 cut(s)	1062, 1231
HgaI	GACGC	3 cut(s)	424, 1007, 1246
HhaI	GCGC	2 cut(s)	32, 625
Hin1I	GRCGYC	3 cut(s)	435, 623, 1272
Hin6I	GCGC	2 cut(s)	30, 623
HinP1I	GCGC	2 cut(s)	30, 623
HincII	GTYRAC	2 cut(s)	49, 643
HindII	GTYRAC	2 cut(s)	49, 643
HinfI	GANTC	4 cut(s)	674, 836, 860, 1007
HpaI	GTTAAC	1 cut(s)	643
HpaII	CCGG	2 cut(s)	1062, 1231
HphI	GGTGA	4 cut(s)	220, 458, 541, 669
Hpy166II	GTNNAC	7 cut(s)	49, 358, 643, 945, 1137, 1201, 1221
Hpy188I	TCNGA	6 cut(s)	193, 451, 575, 865, 1006, 1252
Hpy188III	TCNNGA	6 cut(s)	89, 110, 152, 923, 1022, 1174
Hpy8I	GTNNAC	7 cut(s)	49, 358, 643, 945, 1137, 1201, 1221
Hpy99I	CGWCG	2 cut(s)	526, 1262
HpyAV	CCTTC	3 cut(s)	224, 520, 860
HpyCH4III	ACNGT	1 cut(s)	1205
HpyCH4IV	ACGT	4 cut(s)	440, 521, 583, 1272
HpyCH4V	TGCA	5 cut(s)	175, 250, 338, 956, 1238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	5 cut(s)	798, 862, 987, 1101, 1249
HpySE526I	ACGT	4 cut(s)	440, 521, 583, 1272
Hsp92I	GRCGYC	3 cut(s)	435, 623, 1272
HspAI	GCGC	2 cut(s)	30, 623
KasI	GGCGCC	1 cut(s)	622
KspAI	GTTAAC	1 cut(s)	643
Kzo9I	GATC	7 cut(s)	106, 148, 289, 310, 323, 755, 802
LmnI	GCTCC	3 cut(s)	871, 988, 1039
Lsp1109I	GCAGC	3 cut(s)	234, 1089, 1222
LweI	GCATC	2 cut(s)	347, 1010
MaeII	ACGT	4 cut(s)	440, 521, 583, 1272
MaeIII	GTNAC	5 cut(s)	158, 208, 436, 857, 1205
MalI	GATC	7 cut(s)	108, 150, 291, 312, 325, 757, 804
MboI	GATC	7 cut(s)	106, 148, 289, 310, 323, 755, 802
MboII	GAAGA	7 cut(s)	116, 125, 144, 178, 588, 1117, 1162
MflI	RGATCY	5 cut(s)	106, 289, 310, 755, 802
MluCI	AATT	8 cut(s)	539, 611, 617, 651, 700, 790, 935, 992
Mly113I	GGCGCC	1 cut(s)	623
MlyI	GAGTC	2 cut(s)	845, 854
MmeI	TCCRAC	3 cut(s)	553, 656, 760
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	5 cut(s)	423, 594, 642, 650, 1324
MslI	CAYNNNNRTG	2 cut(s)	203, 1196
MspI	CCGG	2 cut(s)	1062, 1231
MspR9I	CCNGG	5 cut(s)	379, 681, 882, 1232, 1297
MvaI	CCWGG	4 cut(s)	379, 681, 882, 1297
MwoI	GCNNNNNNNGC	1 cut(s)	488
NarI	GGCGCC	1 cut(s)	623
NciI	CCSGG	1 cut(s)	1232
NdeII	GATC	7 cut(s)	106, 148, 289, 310, 323, 755, 802
NlaIV	GGNNCC	5 cut(s)	312, 624, 804, 873, 1049
NmuCI	GTSAC	3 cut(s)	208, 436, 857
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	674, 1007
PflFI	GACNNNGTC	1 cut(s)	1256
PflMI	CCANNNNNTGG	2 cut(s)	401, 881
PkrI	GCNGC	4 cut(s)	249, 746, 1079, 1237
PleI	GAGTC	2 cut(s)	844, 854
PluTI	GGCGCC	1 cut(s)	626
PpsI	GAGTC	2 cut(s)	844, 854
PpuMI	RGGWCCY	1 cut(s)	1048
PsiI	TTATAA	1 cut(s)	789
Psp5II	RGGWCCY	1 cut(s)	1048
Psp6I	CCWGG	4 cut(s)	377, 679, 880, 1295
PspEI	GGTNACC	1 cut(s)	208
PspGI	CCWGG	4 cut(s)	377, 679, 880, 1295
PspN4I	GGNNCC	5 cut(s)	312, 624, 804, 873, 1049
PspPI	GGNCC	1 cut(s)	1048
PspPPI	RGGWCCY	1 cut(s)	1048
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	5 cut(s)	106, 289, 310, 755, 802
PsyI	GACNNNGTC	1 cut(s)	1256
RsaI	GTAC	3 cut(s)	222, 1202, 1220
RsaNI	GTAC	3 cut(s)	221, 1201, 1219
RseI	CAYNNNNRTG	2 cut(s)	203, 1196
SaqAI	TTAA	5 cut(s)	423, 594, 642, 650, 1324
SatI	GCNGC	4 cut(s)	248, 745, 1078, 1236
Sau3AI	GATC	7 cut(s)	106, 148, 289, 310, 323, 755, 802
Sau96I	GGNCC	1 cut(s)	1048
ScaI	AGTACT	1 cut(s)	222
SchI	GAGTC	2 cut(s)	845, 854
ScrFI	CCNGG	5 cut(s)	379, 681, 882, 1232, 1297
SfaNI	GCATC	2 cut(s)	347, 1010
SfcI	CTRYAG	1 cut(s)	248
SfoI	GGCGCC	1 cut(s)	624
SinI	GGWCC	1 cut(s)	1048
SmiMI	CAYNNNNRTG	2 cut(s)	203, 1196
Sse9I	AATT	8 cut(s)	539, 611, 617, 651, 700, 790, 935, 992
SsiI	CCGC	1 cut(s)	744
SspDI	GGCGCC	1 cut(s)	622
SspI	AATATT	1 cut(s)	813
StyD4I	CCNGG	5 cut(s)	377, 679, 880, 1230, 1295
StyI	CCWWGG	1 cut(s)	1142
TaaI	ACNGT	1 cut(s)	1205
TaiI	ACGT	4 cut(s)	443, 524, 586, 1275
TaqI	TCGA	7 cut(s)	111, 231, 524, 672, 975, 1114, 1260
TasI	AATT	8 cut(s)	539, 611, 617, 651, 700, 790, 935, 992
TatI	WGTACW	2 cut(s)	220, 1218
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	2 cut(s)	674, 1007
Tru1I	TTAA	5 cut(s)	423, 594, 642, 650, 1324
Tru9I	TTAA	5 cut(s)	423, 594, 642, 650, 1324
TscAI	CASTG	3 cut(s)	892, 985, 1041
TseFI	GTSAC	3 cut(s)	208, 436, 857
TseI	GCWGC	3 cut(s)	247, 1077, 1235
Tsp45I	GTSAC	3 cut(s)	208, 436, 857
TspDTI	ATGAA	5 cut(s)	315, 337, 429, 783, 1179
TspGWI	ACGGA	2 cut(s)	34, 284
TspRI	CASTG	3 cut(s)	892, 985, 1041
Tth111I	GACNNNGTC	1 cut(s)	1256
Van91I	CCANNNNNTGG	2 cut(s)	401, 881
VpaK11BI	GGWCC	1 cut(s)	1048
XapI	RAATTY	3 cut(s)	539, 611, 935
XmiI	GTMKAC	2 cut(s)	357, 944
XmnI	GAANNNNTTC	1 cut(s)	386
ZraI	GACGTC	1 cut(s)	1273
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.