Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Forward (+)

24951370 .. 24955736

Gene Structure 4367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G256800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGCTCCCAAGGATCCGAAGCAGAGTGGAGGTTTCTTCGCCTCGATGGCTTCCACTTTGACCAATCTTGGCAGCGCCATGACCAAATCCGTCAACGGCATAGTGGGTTATGAGGGGCTGGAGGTTATCAACCCAGATGGAAGCTCAGAAGATCTCGAAGACGAAGCAAGGAAAGGAAGGTGGAAGCAGGAGGATCGGGATGGTTACTGGAAGGTGATGCAGAAGTATATAGGCTCTGACGTCACATCATTGGTGACCCTTCCAGTGCTTATTTTTGAGCCAATGACTATGCTACAGAAAATGGCAGAGCTGATGGAATACTCCCATCTGTTAGATCTGGCAGATGAATGTGAGGATCCATACATGAGATTGGTGTATGCATCCTCATTTTTTATATCTGTTTACTTTGCCTTTCAACGAACCTGGAAGCCATTCAATCCAATACTTGGTGAGACTTATGAGATGGTTAACCATGGTGGCATTACGTTTATATCAGAACAAGTCAGTCATCACCCTCCTATGAGTGCTGGTCATGCTGAAAATGAGCATTTCATTTACGACATAACTTCGAAGGTGAAAACCAAATTTCTAGGGAACTCAATTGATATCTATCCAGTCGGAAGAACGCGTTTGACCCTAAAAAAAGATGGCGTAGTCCTTGATTTGGCACCCCCTCCAACAAAAGTTAACAACTTAATTTTTGGACGAACATGGGTTGATTCACCAGGAGATATGGTTCTGACCAATTTGACCACGGGGGACAAAGTTGTGCTATATTTTCAACCATGCGGCTGGTTTGGATCTGGTCGCTATGAAGTAGATGGGTATGTTTATAATTCTGCCGAGGAACCTAAAATATTGATGACTGGAAAATGGAACGAGTCAATGAGTTATCAACCCTGTGACTCAGAAGGGGAACCACTTCCTGGCACTGAACTGAAAGAGGTGTGGAGAGTTGCTGATGTTCCAGAAAATGATAAATTCCAGTACACACATTTTGCTCATAAGATAAATAGCTTTGACACTGCTCCTAAGAAGTTATTGGCATCAGACTCTCGCTTGCGTCCTGATAGATACGCACTGGAGCAAGGTGACTTATCCAAAGCGGGTTTTGAAAAGAGCAGTCTGGAGGAGAGACAGAGAGATGAGAAGAAAAATCGAGTGGCAAAGGGACAGGAGTTTACTCCAAGATGGTTTGACAAAACAGATGAAATCTGTCCTACAACGTGGGATGACTTGGAAGTGTACCGTTACAATGGAAAATACACTGAACATCGGGCTGCAGTAGATAACTCAGACAGTGTTGAAGCGATTGACGTCAAATCAATAGAGTTCAACCCCTGGCAATATGAGAATTTGGCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

457

Amino Acids

51.83

Weight (kDa)

4.98

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	834
AatII	GACGTC	2 cut(s)	243, 1320
AccB1I	GGYRCC	1 cut(s)	667
AccB7I	CCANNNNNTGG	2 cut(s)	446, 926
AccII	CGCG	1 cut(s)	628
AciI	CCGC	2 cut(s)	789, 1106
AclWI	GGATC	6 cut(s)	8, 21, 201, 350, 363, 808
AcsI	RAATTY	3 cut(s)	584, 980, 1354
AcyI	GRCGYC	2 cut(s)	240, 1317
AfaI	GTAC	2 cut(s)	989, 1247
AfiI	CCNNNNNNNGG	3 cut(s)	446, 664, 926
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	6 cut(s)	416, 436, 782, 1115, 1307, 1336
AjnI	CCWGG	4 cut(s)	422, 724, 925, 1340
AloI	GAACNNNNNNTCC	2 cut(s)	720, 752
AluBI	AGCT	3 cut(s)	144, 310, 1017
AluI	AGCT	3 cut(s)	144, 310, 1017
Alw26I	GTCTC	2 cut(s)	446, 1129
AlwI	GGATC	6 cut(s)	8, 21, 201, 350, 363, 808
ApeKI	GCWGC	4 cut(s)	72, 1280, 1361, 1364
ApoI	RAATTY	3 cut(s)	584, 980, 1354
Asp700I	GAANNNNTTC	2 cut(s)	431, 921
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	7 cut(s)	226, 265, 461, 503, 586, 714, 1103
AsuII	TTCGAA	1 cut(s)	569
BamHI	GGATCC	2 cut(s)	13, 355
BanI	GGYRCC	1 cut(s)	667
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	84, 1267, 1348, 1351
BccI	CCATC	9 cut(s)	40, 131, 194, 307, 333, 457, 641, 815, 1185
BceAI	ACGGC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	4 cut(s)	424, 726, 927, 1342
BcoDI	GTCTC	2 cut(s)	446, 1129
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	2 cut(s)	293, 1281
BfoI	RGCGCY	1 cut(s)	78
BglI	GCCNNNNNGGC	1 cut(s)	47
BglII	AGATCT	2 cut(s)	151, 334
BisI	GCNGC	5 cut(s)	73, 790, 1281, 1362, 1365
BlsI	GCNGC	5 cut(s)	74, 791, 1282, 1363, 1366
Bme1390I	CCNGG	4 cut(s)	424, 726, 927, 1342
BmiI	GGNNCC	6 cut(s)	6, 15, 357, 669, 849, 918
BmrFI	CCNGG	4 cut(s)	424, 726, 927, 1342
BmsI	GCATC	3 cut(s)	207, 389, 1055
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	3 cut(s)	140, 1103, 1148
Bpu14I	TTCGAA	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	609
BsaHI	GRCGYC	2 cut(s)	240, 1317
BsaJI	CCNNGG	5 cut(s)	9, 472, 753, 843, 1340
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 664, 926
Bse1I	ACTGG	6 cut(s)	212, 263, 614, 871, 985, 1086
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	4 cut(s)	424, 726, 927, 1342
BseDI	CCNNGG	5 cut(s)	9, 472, 753, 843, 1340
BseGI	GGATG	3 cut(s)	205, 380, 1237
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	3 cut(s)	446, 664, 926
BseMII	CTCAG	3 cut(s)	159, 921, 1308
BseNI	ACTGG	6 cut(s)	212, 263, 614, 871, 985, 1086
BseRI	GAGGAG	1 cut(s)	1145
BseXI	GCAGC	4 cut(s)	84, 1267, 1348, 1351
Bsh1236I	CGCG	1 cut(s)	628
BshNI	GGYRCC	1 cut(s)	667
BslFI	GGGAC	2 cut(s)	773, 1185
BslI	CCNNNNNNNGG	3 cut(s)	446, 664, 926
BsmAI	GTCTC	2 cut(s)	446, 1129
BsmFI	GGGAC	2 cut(s)	773, 1185
Bsp119I	TTCGAA	1 cut(s)	569
Bsp143I	GATC	6 cut(s)	13, 151, 193, 334, 355, 800
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	2 cut(s)	789, 1106
BspCNI	CTCAG	3 cut(s)	158, 920, 1307
BspFNI	CGCG	1 cut(s)	628
BspLI	GGNNCC	6 cut(s)	6, 15, 357, 669, 849, 918
BspMAI	CTGCAG	1 cut(s)	1285
BspPI	GGATC	6 cut(s)	8, 21, 201, 350, 363, 808
BspT104I	TTCGAA	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	667
BsrI	ACTGG	6 cut(s)	212, 263, 614, 871, 985, 1086
BssECI	CCNNGG	5 cut(s)	9, 472, 753, 843, 1340
BssMI	GATC	6 cut(s)	13, 151, 193, 334, 355, 800
BssNI	GRCGYC	2 cut(s)	240, 1317
BssT1I	CCWWGG	2 cut(s)	9, 472
Bst2UI	CCWGG	4 cut(s)	424, 726, 927, 1342
Bst4CI	ACNGT	2 cut(s)	1250, 1301
BstACI	GRCGYC	2 cut(s)	240, 1317
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	1061
BstDEI	CTNAG	4 cut(s)	145, 907, 1032, 1294
BstDSI	CCRYGG	2 cut(s)	472, 753
BstEII	GGTNACC	1 cut(s)	253
BstF5I	GGATG	3 cut(s)	205, 380, 1237
BstFNI	CGCG	1 cut(s)	628
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	6 cut(s)	16, 154, 196, 337, 358, 803
BstMAI	GTCTC	2 cut(s)	446, 1129
BstMBI	GATC	6 cut(s)	13, 151, 193, 334, 355, 800
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 533
BstNI	CCWGG	4 cut(s)	424, 726, 927, 1342
BstPI	GGTNACC	1 cut(s)	253
BstSCI	CCNGG	4 cut(s)	422, 724, 925, 1340
BstSFI	CTRYAG	2 cut(s)	293, 1281
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	4 cut(s)	84, 1267, 1348, 1351
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	5 cut(s)	13, 151, 334, 355, 800
BstXI	CCANNNNNNTGG	1 cut(s)	792
BstYI	RGATCY	5 cut(s)	13, 151, 334, 355, 800
BtgI	CCRYGG	2 cut(s)	472, 753
BtsCI	GGATG	3 cut(s)	205, 380, 1237
BtsI	GCAGTG	1 cut(s)	1023
BtsIMutI	CAGTG	6 cut(s)	270, 930, 1023, 1079, 1266, 1306
Cac8I	GCNNGC	1 cut(s)	1061
CfoI	GCGC	1 cut(s)	77
CseI	GACGC	1 cut(s)	1052
Csp6I	GTAC	2 cut(s)	988, 1246
CviAII	CATG	6 cut(s)	79, 364, 473, 533, 711, 786
CviQI	GTAC	2 cut(s)	988, 1246
DdeI	CTNAG	4 cut(s)	145, 907, 1032, 1294
DpnI	GATC	6 cut(s)	15, 153, 195, 336, 357, 802
DpnII	GATC	6 cut(s)	13, 151, 193, 334, 355, 800
Eco130I	CCWWGG	2 cut(s)	9, 472
Eco32I	GATATC	1 cut(s)	607
Eco91I	GGTNACC	1 cut(s)	253
EcoO65I	GGTNACC	1 cut(s)	253
EcoRII	CCWGG	4 cut(s)	422, 724, 925, 1340
EcoRV	GATATC	1 cut(s)	607
EcoT14I	CCWWGG	2 cut(s)	9, 472
EcoT22I	ATGCAT	1 cut(s)	382
ErhI	CCWWGG	2 cut(s)	9, 472
FaeI	CATG	6 cut(s)	82, 367, 476, 536, 714, 789
FaqI	GGGAC	2 cut(s)	773, 1185
FatI	CATG	6 cut(s)	78, 363, 472, 532, 710, 785
FauI	CCCGC	1 cut(s)	1099
Fnu4HI	GCNGC	5 cut(s)	73, 790, 1281, 1362, 1365
FokI	GGATG	3 cut(s)	212, 367, 1244
Fsp4HI	GCNGC	5 cut(s)	73, 790, 1281, 1362, 1365
FspBI	CTAG	1 cut(s)	590
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	5 cut(s)	73, 790, 1281, 1362, 1365
GsuI	CTGGAG	3 cut(s)	140, 1103, 1148
HaeII	RGCGCY	1 cut(s)	78
HgaI	GACGC	1 cut(s)	1052
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	2 cut(s)	240, 1317
Hin1II	CATG	6 cut(s)	82, 367, 476, 536, 714, 789
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	3 cut(s)	94, 469, 688
HindII	GTYRAC	3 cut(s)	94, 469, 688
HinfI	GANTC	4 cut(s)	719, 881, 905, 1052
HpaI	GTTAAC	2 cut(s)	469, 688
HphI	GGTGA	7 cut(s)	226, 265, 461, 503, 586, 714, 1103
Hpy166II	GTNNAC	7 cut(s)	94, 403, 469, 688, 990, 1182, 1246
Hpy188I	TCNGA	9 cut(s)	18, 148, 238, 496, 620, 741, 910, 1051, 1297
Hpy188III	TCNNGA	5 cut(s)	155, 197, 968, 1067, 1127
Hpy8I	GTNNAC	7 cut(s)	94, 403, 469, 688, 990, 1182, 1246
HpyAV	CCTTC	5 cut(s)	171, 205, 269, 565, 905
HpyCH4III	ACNGT	2 cut(s)	1250, 1301
HpyCH4IV	ACGT	4 cut(s)	240, 485, 1226, 1317
HpyCH4V	TGCA	3 cut(s)	220, 380, 1283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 533
HpyF3I	CTNAG	4 cut(s)	145, 907, 1032, 1294
HpySE526I	ACGT	4 cut(s)	240, 485, 1226, 1317
Hsp92I	GRCGYC	2 cut(s)	240, 1317
Hsp92II	CATG	6 cut(s)	82, 367, 476, 536, 714, 789
HspAI	GCGC	1 cut(s)	75
KspAI	GTTAAC	2 cut(s)	469, 688
Kzo9I	GATC	6 cut(s)	13, 151, 193, 334, 355, 800
LmnI	GCTCC	3 cut(s)	10, 1033, 1084
Lsp1109I	GCAGC	4 cut(s)	84, 1267, 1348, 1351
LweI	GCATC	3 cut(s)	207, 389, 1055
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	4 cut(s)	240, 485, 1226, 1317
MaeIII	GTNAC	6 cut(s)	203, 241, 253, 902, 1091, 1250
MalI	GATC	6 cut(s)	15, 153, 195, 336, 357, 802
MboI	GATC	6 cut(s)	13, 151, 193, 334, 355, 800
MboII	GAAGA	5 cut(s)	28, 161, 170, 633, 1162
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	5 cut(s)	13, 151, 334, 355, 800
MluCI	AATT	7 cut(s)	584, 600, 696, 745, 835, 980, 1354
MluI	ACGCGT	1 cut(s)	626
MlyI	GAGTC	3 cut(s)	890, 899, 1046
MmeI	TCCRAC	2 cut(s)	598, 701
Mph1103I	ATGCAT	1 cut(s)	382
MroXI	GAANNNNTTC	2 cut(s)	431, 921
MseI	TTAA	3 cut(s)	468, 687, 695
MspR9I	CCNGG	4 cut(s)	424, 726, 927, 1342
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	4 cut(s)	424, 726, 927, 1342
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	2 cut(s)	47, 533
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	6 cut(s)	13, 151, 193, 334, 355, 800
NlaIII	CATG	6 cut(s)	82, 367, 476, 536, 714, 789
NlaIV	GGNNCC	6 cut(s)	6, 15, 357, 669, 849, 918
NmeAIII	GCCGAG	1 cut(s)	868
NmuCI	GTSAC	4 cut(s)	241, 253, 902, 1091
NsiI	ATGCAT	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	569
PdmI	GAANNNNTTC	2 cut(s)	431, 921
PfeI	GAWTC	1 cut(s)	719
PflMI	CCANNNNNTGG	2 cut(s)	446, 926
PkrI	GCNGC	5 cut(s)	74, 791, 1282, 1363, 1366
PleI	GAGTC	3 cut(s)	889, 899, 1046
PpsI	GAGTC	3 cut(s)	889, 899, 1046
PsiI	TTATAA	1 cut(s)	834
Psp6I	CCWGG	4 cut(s)	422, 724, 925, 1340
PspEI	GGTNACC	1 cut(s)	253
PspGI	CCWGG	4 cut(s)	422, 724, 925, 1340
PspN4I	GGNNCC	6 cut(s)	6, 15, 357, 669, 849, 918
PstI	CTGCAG	1 cut(s)	1285
PsuI	RGATCY	5 cut(s)	13, 151, 334, 355, 800
RsaI	GTAC	2 cut(s)	989, 1247
RsaNI	GTAC	2 cut(s)	988, 1246
SaqAI	TTAA	3 cut(s)	468, 687, 695
SatI	GCNGC	5 cut(s)	73, 790, 1281, 1362, 1365
Sau3AI	GATC	6 cut(s)	13, 151, 193, 334, 355, 800
SchI	GAGTC	3 cut(s)	890, 899, 1046
ScrFI	CCNGG	4 cut(s)	424, 726, 927, 1342
SfaNI	GCATC	3 cut(s)	207, 389, 1055
SfcI	CTRYAG	2 cut(s)	293, 1281
SfuI	TTCGAA	1 cut(s)	569
Sse9I	AATT	7 cut(s)	584, 600, 696, 745, 835, 980, 1354
SsiI	CCGC	2 cut(s)	789, 1106
SspI	AATATT	1 cut(s)	858
SspMI	CTAG	1 cut(s)	590
StyD4I	CCNGG	4 cut(s)	422, 724, 925, 1340
StyI	CCWWGG	2 cut(s)	9, 472
TaaI	ACNGT	2 cut(s)	1250, 1301
TaiI	ACGT	4 cut(s)	243, 488, 1229, 1320
TaqI	TCGA	4 cut(s)	44, 156, 569, 1159
TasI	AATT	7 cut(s)	584, 600, 696, 745, 835, 980, 1354
TatI	WGTACW	1 cut(s)	987
TauI	GCSGC	1 cut(s)	792
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	3 cut(s)	468, 687, 695
Tru9I	TTAA	3 cut(s)	468, 687, 695
TscAI	CASTG	6 cut(s)	270, 937, 1030, 1086, 1273, 1306
TseFI	GTSAC	4 cut(s)	241, 253, 902, 1091
TseI	GCWGC	4 cut(s)	72, 1280, 1361, 1364
Tsp45I	GTSAC	4 cut(s)	241, 253, 902, 1091
TspDTI	ATGAA	4 cut(s)	360, 541, 828, 1224
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	6 cut(s)	270, 937, 1030, 1086, 1273, 1306
Van91I	CCANNNNNTGG	2 cut(s)	446, 926
XapI	RAATTY	3 cut(s)	584, 980, 1354
XmnI	GAANNNNTTC	2 cut(s)	431, 921
XspI	CTAG	1 cut(s)	590
ZraI	GACGTC	2 cut(s)	241, 1318
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.