Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Reverse (-)

627034 .. 629280

Gene Structure 2247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGACCAACGGAGAGAAGGTCACGGCTACGGTGGTGAATGGCGGAGGGCTATCTACTGGTGAAAACCCTAAGAAAATTGTAGACCTCAACACTACGGAGTTAGATCGTACTGACGACATTCTCGACGGAGAAGTCAAGGGATTTTCAGATTCTGGTGAAAAGAAGGAAGAAACCGACTCTAATGGTATTGGATCGACGGCTGGTGTTGATTCTGGGGATATCTCTCCGGTCGATGATATCCAGAAGAAGATTCGACGTGCTGAGAGGTTTGGTGTTTCGGTGAAATTGACCGAAGAGGAGAAGCGCAATTCTCGTGCTGAGAGGTTTGGTACTGTAGCTGCAGCAGTGGTGAATGGCTCAGAGGGAACGAAGAAAGCAGAGGAATTGAAGCGAAAAGCAAGAGCTGATAGATTTGGGGTTCCTTCTGCGACCTCTACTACTGATAAGACTGAGGAAGAGGCAAAGAAGAAAGCTAGGCTCGCTCGTTTTGGAAAAGAGACTAAAGTTGATTCTGCTGAAGAAAATAAGCGCAAAGCTAGAGCATTGAGGTTTTCAAAAGAGGCTTCAGCAGATGCATCTTCAGATTTACCTGAGAAGCAAATTATTGGCAAGGAGGCAGCTGTATCAGGAAGCGCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

22.78

Weight (kDa)

6.52

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho1_MOS11_C	PF18592	78 - 111	1.8e-12	Tho1/MOS11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	202
AcuI	CTGAAG	3 cut(s)	540, 552, 567
AfaI	GTAC	2 cut(s)	112, 334
AfeI	AGCGCT	1 cut(s)	637
AgsI	TTSAA	2 cut(s)	391, 558
AjiI	CACGTC	1 cut(s)	260
AluBI	AGCT	5 cut(s)	341, 407, 476, 539, 623
AluI	AGCT	5 cut(s)	341, 407, 476, 539, 623
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	202
AlwNI	CAGNNNCTG	1 cut(s)	155
Aor51HI	AGCGCT	1 cut(s)	637
ApeKI	GCWGC	4 cut(s)	341, 344, 620, 638
AspLEI	GCGC	3 cut(s)	309, 534, 638
AsuHPI	GGTGA	5 cut(s)	49, 74, 170, 295, 364
BauI	CACGAG	1 cut(s)	315
BbvI	GCAGC	4 cut(s)	328, 356, 625, 632
BceAI	ACGGC	2 cut(s)	42, 216
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	2 cut(s)	477, 540
BfmI	CTRYAG	2 cut(s)	336, 342
BfoI	RGCGCY	1 cut(s)	639
BisI	GCNGC	4 cut(s)	342, 345, 621, 639
BlsI	GCNGC	4 cut(s)	343, 346, 622, 640
BmgBI	CACGTC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	423
BmsI	GCATC	2 cut(s)	565, 587
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse1I	ACTGG	1 cut(s)	64
BseMII	CTCAG	5 cut(s)	255, 312, 375, 444, 585
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	4 cut(s)	328, 356, 625, 632
Bsh1285I	CGRYCG	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	106, 194
BspACI	CCGC	1 cut(s)	45
BspCNI	CTCAG	5 cut(s)	256, 313, 374, 445, 586
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	106, 194
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	34, 337
Bst6I	CTCTTC	2 cut(s)	291, 453
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	6 cut(s)	72, 264, 321, 361, 453, 594
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	3 cut(s)	309, 534, 638
BstKTI	GATC	2 cut(s)	109, 197
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	2 cut(s)	106, 194
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstSFI	CTRYAG	2 cut(s)	336, 342
BstV1I	GCAGC	4 cut(s)	328, 356, 625, 632
BtrI	CACGTC	1 cut(s)	260
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	483
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	3 cut(s)	309, 534, 638
Csp6I	GTAC	2 cut(s)	111, 333
CviQI	GTAC	2 cut(s)	111, 333
DdeI	CTNAG	6 cut(s)	72, 264, 321, 361, 453, 594
DpnI	GATC	2 cut(s)	108, 196
DpnII	GATC	2 cut(s)	106, 194
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	291, 453
EarI	CTCTTC	2 cut(s)	291, 453
EciI	GGCGGA	1 cut(s)	60
Eco32I	GATATC	2 cut(s)	223, 241
Eco47III	AGCGCT	1 cut(s)	637
Eco57I	CTGAAG	3 cut(s)	540, 552, 567
EcoRV	GATATC	2 cut(s)	223, 241
EcoT22I	ATGCAT	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	342, 345, 621, 639
Fsp4HI	GCNGC	4 cut(s)	342, 345, 621, 639
FspBI	CTAG	2 cut(s)	477, 540
GlaI	GCGC	3 cut(s)	308, 533, 637
GluI	GCNGC	4 cut(s)	342, 345, 621, 639
HaeII	RGCGCY	1 cut(s)	639
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	3 cut(s)	309, 534, 638
Hin6I	GCGC	3 cut(s)	307, 532, 636
HinP1I	GCGC	3 cut(s)	307, 532, 636
HinfI	GANTC	5 cut(s)	152, 179, 212, 253, 512
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	5 cut(s)	49, 74, 170, 295, 364
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	3 cut(s)	151, 364, 586
Hpy188III	TCNNGA	3 cut(s)	125, 244, 630
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	3 cut(s)	131, 202, 261
HpyAV	CCTTC	3 cut(s)	13, 160, 435
HpyCH4III	ACNGT	2 cut(s)	34, 337
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	2 cut(s)	344, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	6 cut(s)	72, 264, 321, 361, 453, 594
HpySE526I	ACGT	1 cut(s)	259
HspAI	GCGC	3 cut(s)	307, 532, 636
Kzo9I	GATC	2 cut(s)	106, 194
LpnPI	CCDG	8 cut(s)	45, 141, 189, 201, 243, 257, 606, 615
Lsp1109I	GCAGC	4 cut(s)	328, 356, 625, 632
LweI	GCATC	2 cut(s)	565, 587
MaeI	CTAG	2 cut(s)	477, 540
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	108, 196
MboI	GATC	2 cut(s)	106, 194
MboII	GAAGA	9 cut(s)	182, 259, 262, 308, 385, 470, 481, 533, 573
MluCI	AATT	5 cut(s)	78, 287, 310, 386, 603
MlyI	GAGTC	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	580
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	2 cut(s)	106, 194
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	4 cut(s)	152, 212, 253, 512
PkrI	GCNGC	4 cut(s)	343, 346, 622, 640
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	112, 334
RsaNI	GTAC	2 cut(s)	111, 333
SatI	GCNGC	4 cut(s)	342, 345, 621, 639
Sau3AI	GATC	2 cut(s)	106, 194
SchI	GAGTC	1 cut(s)	173
SfaNI	GCATC	2 cut(s)	565, 587
SfcI	CTRYAG	2 cut(s)	336, 342
Sse9I	AATT	5 cut(s)	78, 287, 310, 386, 603
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	2 cut(s)	477, 540
TaaI	ACNGT	2 cut(s)	34, 337
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	4 cut(s)	126, 197, 234, 256
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	5 cut(s)	78, 287, 310, 386, 603
TfiI	GAWTC	4 cut(s)	152, 212, 253, 512
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	4 cut(s)	341, 344, 620, 638
Tsp45I	GTSAC	1 cut(s)	22
TspGWI	ACGGA	3 cut(s)	27, 113, 144
TspRI	CASTG	1 cut(s)	354
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	2 cut(s)	477, 540
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.