Rh3BG162900

Protein MODIFIER OF SNC1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009618
Physical Location & Seq
Reverse (-)
14006584 .. 14010114
3531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG162900.1

Sequence Viewer

Length: 654 bp
ATGGCCAGCATCGATACCCAGAAACCCACCGACACCACTCCCGCCGTCGAAAACCCTACCAAAGCCGTCGACCCCCCGGCCCCAGCCGCCGCGCCTAAACCAGATCTCCCCGTAGACCCTCCCACCGAGACTCCCGCCCCTACAGCCCCACCCTCCGCCGTTGACTCAGCTGAAAACGTGTCCAAGGCGGACTCCGAGGACCCCAAGACCGCTGCGGCCGCAGAGGATGGCGCTGCTCCGGCTTCTGTTGTTGAGAAGAAGATCCGCCGCGCCGAGCGCTTCGGTATATCTGTGCAGCTCACTGAAGAAGAGAAGCGCAATTCTCGAGCTGAAAGATTTGGTACTGTTTCTACATCACATGGATCAGAAGCATCCAAAAAGTCTGAGGAGCTGAAGAGAAAGGCTAGAGCAGAGAGGTTTGGGATTGCTGCTCCACCTGTGGCAAGTGATGAGGATGCGAGGAAGAAAGCTCGACTGGCCCGATTTGCACCTGTTTCTAAGACTGCTAAACCTGACCCTCAGGAAGAAGAAAAAAGGAAGGCAAGGTCACTCAGGTTTTCAAATGGTTCTGCAGGTTCTCTCTCTCAAGTGAATGACAAGGGAAATATTGAGCAGAAGGCAGCGATTGCAGGCGGTGCTGTAGGAAAGGCATGA

Protein Analysis

217

Amino Acids

22.7

Weight (kDa)

9.02

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tho1_MOS11_C PF18592 85 - 114 1.3e-11 Tho1/MOS11 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 563
AccI GTMKAC 2 cut(s) 69, 114
AccII CGCG 2 cut(s) 92, 270
AclWI GGATC 2 cut(s) 256, 370
AcoI YGGCCR 2 cut(s) 3, 216
AcuI CTGAAG 2 cut(s) 324, 413
AfaI GTAC 1 cut(s) 343
AfeI AGCGCT 1 cut(s) 278
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 561
AluBI AGCT 5 cut(s) 170, 298, 329, 391, 470
AluI AGCT 5 cut(s) 170, 298, 329, 391, 470
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 2 cut(s) 256, 370
Ama87I CYCGRG 1 cut(s) 324
Aor51HI AGCGCT 1 cut(s) 278
AoxI GGCC 4 cut(s) 3, 78, 216, 477
ApeKI GCWGC 5 cut(s) 212, 233, 295, 428, 620
AspLEI GCGC 5 cut(s) 94, 233, 272, 279, 318
AspS9I GGNCC 3 cut(s) 79, 199, 478
AsuC2I CCSGG 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 324
AvaII GGWCC 1 cut(s) 199
AxyI CCTNAGG 1 cut(s) 519
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 5 cut(s) 199, 220, 307, 415, 632
BccI CCATC 1 cut(s) 221
BceAI ACGGC 3 cut(s) 29, 50, 143
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 3 cut(s) 141, 570, 639
BfoI RGCGCY 2 cut(s) 234, 280
BfuAI ACCTGC 1 cut(s) 563
BglII AGATCT 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 324
BmgT120I GGNCC 3 cut(s) 79, 199, 478
BmiI GGNNCC 2 cut(s) 81, 201
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 3 cut(s) 18, 380, 445
BpuEI CTTGAG 1 cut(s) 570
BpuMI CCSGG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 12
BsaJI CCNNGG 3 cut(s) 75, 183, 195
BsaXI ACNNNNNCTCC 4 cut(s) 90, 115, 120, 145
Bse1I ACTGG 1 cut(s) 480
Bse21I CCTNAGG 1 cut(s) 519
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 3 cut(s) 75, 183, 195
BseGI GGATG 3 cut(s) 232, 371, 460
BseMII CTCAG 4 cut(s) 180, 375, 533, 565
BseNI ACTGG 1 cut(s) 480
BseRI GAGGAG 1 cut(s) 401
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 5 cut(s) 199, 220, 307, 415, 632
BseYI CCCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 2 cut(s) 92, 270
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 4 cut(s) 5, 80, 218, 479
BshVI ATCGAT 1 cut(s) 12
BsiEI CGRYCG 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 2 cut(s) 77, 239
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 4 cut(s) 5, 80, 218, 479
BsoBI CYCGRG 1 cut(s) 324
Bsp143I GATC 3 cut(s) 103, 261, 362
BspANI GGCC 4 cut(s) 5, 80, 218, 479
BspCNI CTCAG 4 cut(s) 179, 376, 532, 564
BspDI ATCGAT 1 cut(s) 12
BspFNI CGCG 2 cut(s) 92, 270
BspLI GGNNCC 2 cut(s) 81, 201
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 563
BspPI GGATC 2 cut(s) 256, 370
BsrI ACTGG 1 cut(s) 480
BssECI CCNNGG 3 cut(s) 75, 183, 195
BssMI GATC 3 cut(s) 103, 261, 362
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 2 cut(s) 303, 389
BstAPI GCANNNNNTGC 2 cut(s) 626, 635
BstC8I GCNNGC 2 cut(s) 7, 631
BstDEI CTNAG 5 cut(s) 166, 384, 498, 519, 551
BstF5I GGATG 3 cut(s) 232, 371, 460
BstFNI CGCG 2 cut(s) 92, 270
BstH2I RGCGCY 2 cut(s) 234, 280
BstHHI GCGC 5 cut(s) 94, 233, 272, 279, 318
BstKTI GATC 3 cut(s) 106, 264, 365
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 3 cut(s) 103, 261, 362
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 9 cut(s) 86, 143, 218, 239, 276, 476, 485, 626, 635
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 3 cut(s) 141, 570, 639
BstUI CGCG 2 cut(s) 92, 270
BstV1I GCAGC 5 cut(s) 199, 220, 307, 415, 632
BstX2I RGATCY 2 cut(s) 103, 261
BstYI RGATCY 2 cut(s) 103, 261
BstZI CGGCCG 1 cut(s) 216
Bsu15I ATCGAT 1 cut(s) 12
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 4 cut(s) 5, 80, 218, 479
BsuTUI ATCGAT 1 cut(s) 12
BtsCI GGATG 3 cut(s) 232, 371, 460
BtsIMutI CAGTG 1 cut(s) 300
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 2 cut(s) 7, 631
CciNI GCGGCCGC 1 cut(s) 216
CfoI GCGC 5 cut(s) 94, 233, 272, 279, 318
Cfr13I GGNCC 3 cut(s) 79, 199, 478
ClaI ATCGAT 1 cut(s) 12
Csp6I GTAC 1 cut(s) 342
CviAII CATG 2 cut(s) 359, 651
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 5 cut(s) 166, 384, 498, 519, 551
DpnI GATC 3 cut(s) 105, 263, 364
DpnII GATC 3 cut(s) 103, 261, 362
EaeI YGGCCR 2 cut(s) 3, 216
EagI CGGCCG 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 303, 389
EarI CTCTTC 2 cut(s) 303, 389
EciI GGCGGA 3 cut(s) 145, 203, 254
EclXI CGGCCG 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 199
Eco47III AGCGCT 1 cut(s) 278
Eco52I CGGCCG 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 324, 413
Eco81I CCTNAGG 1 cut(s) 519
Eco88I CYCGRG 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 362, 654
FaiI YATR 3 cut(s) 287, 360, 652
FatI CATG 2 cut(s) 358, 650
FauI CCCGC 2 cut(s) 49, 142
FblI GTMKAC 2 cut(s) 69, 114
FokI GGATG 3 cut(s) 239, 358, 467
FspBI CTAG 1 cut(s) 405
GlaI GCGC 5 cut(s) 93, 232, 271, 278, 317
GsaI CCCAGC 1 cut(s) 86
HaeII RGCGCY 2 cut(s) 234, 280
HaeIII GGCC 4 cut(s) 5, 80, 218, 479
HapII CCGG 2 cut(s) 77, 239
HhaI GCGC 5 cut(s) 94, 233, 272, 279, 318
Hin1II CATG 2 cut(s) 362, 654
Hin6I GCGC 5 cut(s) 92, 231, 270, 277, 316
HinP1I GCGC 5 cut(s) 92, 231, 270, 277, 316
HincII GTYRAC 2 cut(s) 70, 163
HindII GTYRAC 2 cut(s) 70, 163
HinfI GANTC 3 cut(s) 130, 164, 191
HpaII CCGG 2 cut(s) 77, 239
Hpy166II GTNNAC 3 cut(s) 70, 115, 163
Hpy188I TCNGA 3 cut(s) 196, 367, 385
Hpy188III TCNNGA 2 cut(s) 324, 521
Hpy8I GTNNAC 3 cut(s) 70, 115, 163
Hpy99I CGWCG 2 cut(s) 50, 71
HpyAV CCTTC 2 cut(s) 532, 610
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 295, 488, 572, 629
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 143, 218, 239, 276, 476, 485, 626, 635
HpyF3I CTNAG 5 cut(s) 166, 384, 498, 519, 551
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 2 cut(s) 362, 654
HspAI GCGC 5 cut(s) 92, 231, 270, 277, 316
Kzo9I GATC 3 cut(s) 103, 261, 362
LmnI GCTCC 3 cut(s) 241, 388, 436
Lsp1109I GCAGC 5 cut(s) 199, 220, 307, 415, 632
LweI GCATC 3 cut(s) 18, 380, 445
MaeI CTAG 1 cut(s) 405
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 546
MalI GATC 3 cut(s) 105, 263, 364
MboI GATC 3 cut(s) 103, 261, 362
MboII GAAGA 8 cut(s) 268, 271, 317, 320, 406, 475, 536, 539
MflI RGATCY 2 cut(s) 103, 261
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 319
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 124, 158, 185
MnlI CCTC 9 cut(s) 129, 163, 190, 217, 379, 408, 445, 453, 528
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 170, 212
MspI CCGG 2 cut(s) 77, 239
MspR9I CCNGG 1 cut(s) 77
MvnI CGCG 2 cut(s) 92, 270
MwoI GCNNNNNNNGC 9 cut(s) 86, 143, 218, 239, 276, 476, 485, 626, 635
NciI CCSGG 1 cut(s) 77
NdeII GATC 3 cut(s) 103, 261, 362
NlaIII CATG 2 cut(s) 362, 654
NlaIV GGNNCC 2 cut(s) 81, 201
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 546
NotI GCGGCCGC 1 cut(s) 216
PaeR7I CTCGAG 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PleI GAGTC 3 cut(s) 124, 158, 185
PpsI GAGTC 3 cut(s) 124, 158, 185
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 81, 201
PspPI GGNCC 3 cut(s) 79, 199, 478
PspPPI RGGWCCY 1 cut(s) 199
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 2 cut(s) 103, 261
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SalI GTCGAC 1 cut(s) 68
Sau3AI GATC 3 cut(s) 103, 261, 362
Sau96I GGNCC 3 cut(s) 79, 199, 478
SchI GAGTC 3 cut(s) 124, 158, 185
ScrFI CCNGG 1 cut(s) 77
SfaNI GCATC 3 cut(s) 18, 380, 445
SfcI CTRYAG 3 cut(s) 141, 570, 639
Sfr274I CTCGAG 1 cut(s) 324
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 324
SmlI CTYRAG 2 cut(s) 324, 585
SmoI CTYRAG 2 cut(s) 324, 585
Sse9I AATT 1 cut(s) 319
SspI AATATT 1 cut(s) 607
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 180
TaqI TCGA 5 cut(s) 12, 48, 69, 325, 472
TasI AATT 1 cut(s) 319
TauI GCSGC 5 cut(s) 89, 92, 218, 221, 270
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 5 cut(s) 212, 233, 295, 428, 620
Tsp45I GTSAC 1 cut(s) 546
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 324
XmiI GTMKAC 2 cut(s) 69, 114
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.