Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Forward (+)

13111535 .. 13113128

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTGGTCGAACATGGCTGGACATAACAGGCAAAATATCCCCTCCAAAATTCTCACGCTTCTTGTTTGCACTTTCACTTTCTTCGCATTCTCACAACCTAAGCCTCACTCCTCTCTCTCTCTAACCTTTTTTGCCGCACTTCTCACGCGCTCTCCGATTCCCAATTCTCCAATGGCCACCGACACACAGAAGCCCAGCGACACAACCACCGCCGTAGAAACCCCTAAGAAAATCCTAGGCACCTCCCCCGTCCCACCCACCTCCACAATTTCGGATCCACCCGAAAATCCGTCCGGCGGCACTCCCTCCGATCTACCTCCGTCGTCCGAGGTTAACTCCGAAGAAAATGGGTCCAAGGCCGACTCCGAGGATACCAAGACTGGCTCTGCCGCCGGTGACGCGGCTGCTCCGGCTACTGCCATTGAGAAGAAGATGCGCCGTGCCGAGCGGTTTGGGATATCCGTGCAGCTCACCGAAGAAGAGAAACGCAACTCTCGTGCTGAGAGGTTTGGTACTGTTTCGACATCGCTTGGATCCCAAGCATCTGAAAAACCAGAGGACCTAAAGAGGAAGGCTAGAGCAGAGAGGTTTGGTCTTCCTGGCCCAGCTGTGGTAGGTGATGAGGATGCAAAGAAGAAGGCTCGTCTTGCTCGGTTTGCACCTATTTCCAAGACAGATACTAAAGCTGATCCTCAGGAAGAAGAAAAACGAAAGGCAAGGGCACTCAGGTTTTCAAACACCTCAAAGGGTTCTCTTACTCAAGTGAATGAAAAGGGTAATGTTGAGCCGGTAAGAGACTCTTATCTAAGGCAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

29.36

Weight (kDa)

9.36

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho1_MOS11_C	PF18592	141 - 171	1.4e-11	Tho1/MOS11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	448
AccII	CGCG	2 cut(s)	148, 401
AciI	CCGC	6 cut(s)	135, 210, 297, 390, 401, 448
AclWI	GGATC	5 cut(s)	269, 282, 528, 541, 683
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	48
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	2 cut(s)	296, 610
AgsI	TTSAA	1 cut(s)	735
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	3 cut(s)	469, 608, 686
AluI	AGCT	3 cut(s)	469, 608, 686
Alw26I	GTCTC	1 cut(s)	789
AlwI	GGATC	5 cut(s)	269, 282, 528, 541, 683
AoxI	GGCC	3 cut(s)	174, 357, 601
ApeKI	GCWGC	3 cut(s)	404, 466, 811
ApoI	RAATTY	1 cut(s)	48
AspA2I	CCTAGG	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	150, 438
AspS9I	GGNCC	3 cut(s)	351, 559, 602
AsuHPI	GGTGA	3 cut(s)	407, 463, 629
AvaII	GGWCC	2 cut(s)	351, 559
AvrII	CCTAGG	1 cut(s)	235
AxyI	CCTNAGG	1 cut(s)	693
BaeGI	GKGCMC	1 cut(s)	724
BalI	TGGCCA	1 cut(s)	176
BamHI	GGATCC	2 cut(s)	274, 533
BanI	GGYRCC	1 cut(s)	239
BauI	CACGAG	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	587
BbvI	GCAGC	2 cut(s)	391, 478
BceAI	ACGGC	2 cut(s)	197, 423
BciT130I	CCWGG	1 cut(s)	600
BciVI	GTATCC	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	2 cut(s)	236, 576
BfuI	GTATCC	1 cut(s)	364
BisI	GCNGC	7 cut(s)	135, 298, 390, 402, 405, 467, 812
BlnI	CCTAGG	1 cut(s)	235
BlsI	GCNGC	7 cut(s)	136, 299, 391, 403, 406, 468, 813
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	2 cut(s)	351, 559
BmgT120I	GGNCC	3 cut(s)	351, 559, 602
BmiI	GGNNCC	4 cut(s)	241, 276, 352, 535
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	3 cut(s)	423, 551, 616
BpiI	GAAGAC	1 cut(s)	587
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	744
BsaJI	CCNNGG	4 cut(s)	235, 327, 354, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 610
Bse118I	RCCGGY	2 cut(s)	392, 787
Bse1I	ACTGG	1 cut(s)	385
Bse21I	CCTNAGG	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	4 cut(s)	235, 327, 354, 366
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	2 cut(s)	296, 610
BseMII	CTCAG	3 cut(s)	492, 707, 739
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	2 cut(s)	391, 478
BseYI	CCCAGC	2 cut(s)	194, 604
BsgI	GTGCAG	1 cut(s)	485
Bsh1236I	CGCG	2 cut(s)	148, 401
BshFI	GGCC	3 cut(s)	176, 359, 603
BshNI	GGYRCC	1 cut(s)	239
BsiSI	CCGG	4 cut(s)	294, 393, 410, 788
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	296, 610
BsmAI	GTCTC	1 cut(s)	789
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	176, 359, 603
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	4 cut(s)	274, 310, 533, 688
BspACI	CCGC	6 cut(s)	135, 210, 297, 390, 401, 448
BspANI	GGCC	3 cut(s)	176, 359, 603
BspCNI	CTCAG	3 cut(s)	493, 706, 738
BspFNI	CGCG	2 cut(s)	148, 401
BspLI	GGNNCC	4 cut(s)	241, 276, 352, 535
BspPI	GGATC	5 cut(s)	269, 282, 528, 541, 683
BspT107I	GGYRCC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	448
BsrFI	RCCGGY	2 cut(s)	392, 787
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	2 cut(s)	392, 787
BssECI	CCNNGG	4 cut(s)	235, 327, 354, 366
BssMI	GATC	4 cut(s)	274, 310, 533, 688
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	2 cut(s)	235, 354
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	474
BstDEI	CTNAG	6 cut(s)	99, 225, 501, 693, 725, 806
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	2 cut(s)	148, 401
BstHHI	GCGC	2 cut(s)	150, 438
BstKTI	GATC	4 cut(s)	277, 313, 536, 691
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	4 cut(s)	274, 310, 533, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	398, 410, 647, 656
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	598
BstSLI	GKGCMC	1 cut(s)	724
BstUI	CGCG	2 cut(s)	148, 401
BstV1I	GCAGC	2 cut(s)	391, 478
BstV2I	GAAGAC	1 cut(s)	587
BstX2I	RGATCY	2 cut(s)	274, 533
BstYI	RGATCY	2 cut(s)	274, 533
Bsu36I	CCTNAGG	1 cut(s)	693
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	176, 359, 603
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	631
CfoI	GCGC	2 cut(s)	150, 438
Cfr10I	RCCGGY	2 cut(s)	392, 787
Cfr13I	GGNCC	3 cut(s)	351, 559, 602
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	1 cut(s)	13
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	6 cut(s)	99, 225, 501, 693, 725, 806
DpnI	GATC	4 cut(s)	276, 312, 535, 690
DpnII	GATC	4 cut(s)	274, 310, 533, 688
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	235, 354
Eco32I	GATATC	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	351, 559
Eco81I	CCTNAGG	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	459
EcoT14I	CCWWGG	2 cut(s)	235, 354
ErhI	CCWWGG	2 cut(s)	235, 354
FaeI	CATG	1 cut(s)	16
FaiI	YATR	3 cut(s)	14, 24, 817
FalI	AAGNNNNNCTT	2 cut(s)	784, 816
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	7 cut(s)	135, 298, 390, 402, 405, 467, 812
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	7 cut(s)	135, 298, 390, 402, 405, 467, 812
FspBI	CTAG	2 cut(s)	236, 576
GlaI	GCGC	2 cut(s)	149, 437
GluI	GCNGC	7 cut(s)	135, 298, 390, 402, 405, 467, 812
GsaI	CCCAGC	2 cut(s)	198, 608
HaeIII	GGCC	3 cut(s)	176, 359, 603
HapII	CCGG	4 cut(s)	294, 393, 410, 788
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	2 cut(s)	150, 438
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	2 cut(s)	148, 436
HinP1I	GCGC	2 cut(s)	148, 436
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	3 cut(s)	157, 362, 797
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	4 cut(s)	294, 393, 410, 788
HphI	GGTGA	3 cut(s)	407, 463, 629
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	7 cut(s)	156, 274, 310, 328, 340, 367, 547
Hpy188III	TCNNGA	1 cut(s)	695
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	565, 631
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4V	TGCA	4 cut(s)	69, 466, 629, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	398, 410, 647, 656
HpyF3I	CTNAG	6 cut(s)	99, 225, 501, 693, 725, 806
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	2 cut(s)	148, 436
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	274, 310, 533, 688
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	2 cut(s)	391, 478
LweI	GCATC	3 cut(s)	423, 551, 616
MaeI	CTAG	2 cut(s)	236, 576
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	4 cut(s)	276, 312, 535, 690
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	4 cut(s)	274, 310, 533, 688
MflI	RGATCY	2 cut(s)	274, 533
MhlI	GDGCHC	1 cut(s)	724
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	3 cut(s)	48, 163, 267
MluNI	TGGCCA	1 cut(s)	176
MlyI	GAGTC	2 cut(s)	356, 791
Mox20I	TGGCCA	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	4 cut(s)	294, 393, 410, 788
MspR9I	CCNGG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	2 cut(s)	148, 401
MwoI	GCNNNNNNNGC	4 cut(s)	398, 410, 647, 656
NdeII	GATC	4 cut(s)	274, 310, 533, 688
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	4 cut(s)	241, 276, 352, 535
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	2 cut(s)	152, 493
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	7 cut(s)	136, 299, 391, 403, 406, 468, 813
PleI	GAGTC	2 cut(s)	356, 791
PpsI	GAGTC	2 cut(s)	356, 791
PpuMI	RGGWCCY	1 cut(s)	559
Psp5II	RGGWCCY	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	2 cut(s)	194, 604
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	4 cut(s)	241, 276, 352, 535
PspPI	GGNCC	3 cut(s)	351, 559, 602
PspPPI	RGGWCCY	1 cut(s)	559
PsuI	RGATCY	2 cut(s)	274, 533
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	7 cut(s)	135, 298, 390, 402, 405, 467, 812
Sau3AI	GATC	4 cut(s)	274, 310, 533, 688
Sau96I	GGNCC	3 cut(s)	351, 559, 602
SchI	GAGTC	2 cut(s)	356, 791
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	1 cut(s)	724
SfaNI	GCATC	3 cut(s)	423, 551, 616
SgrAI	CRCCGGYG	1 cut(s)	392
SinI	GGWCC	2 cut(s)	351, 559
SmlI	CTYRAG	1 cut(s)	759
SmoI	CTYRAG	1 cut(s)	759
Sse9I	AATT	3 cut(s)	48, 163, 267
SsiI	CCGC	6 cut(s)	135, 210, 297, 390, 401, 448
SspMI	CTAG	2 cut(s)	236, 576
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	2 cut(s)	235, 354
TaaI	ACNGT	1 cut(s)	517
TaqI	TCGA	2 cut(s)	8, 521
TasI	AATT	3 cut(s)	48, 163, 267
TauI	GCSGC	4 cut(s)	137, 300, 392, 404
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	3 cut(s)	404, 466, 811
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	1 cut(s)	783
TspGWI	ACGGA	3 cut(s)	279, 309, 451
VpaK11BI	GGWCC	2 cut(s)	351, 559
XapI	RAATTY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmaJI	CCTAGG	1 cut(s)	235
XspI	CTAG	2 cut(s)	236, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.