Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Reverse (-)

19594644 .. 19595723

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1111200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCGCCGTGCCGAGCGGTTTGGGATATCCGTGCAGCTCTCAGAAGAAGAGAAACGCAACTCTCGTGCTGAGAGGTTTGGTACTGTTTCGACATCGCTTGGATCCCAAGCATCTAAAAAACCAGAAGACCTAAAGAGGAAGGCTAGAGCAGAGAGGTTTGGGCTTCCTGCCCCAGCTGTGGTAGGTGATGAGGATGCAAAGAAGAAGGCTCGTCTTGCTCGGTTTGCACCTATTTCCAAGACAGATACTAAAGCTGATCCTCAGGAAGAAGAAAAACGAAAAGCAAGGGCACTCAGGTTTTCAAACACCTCAAAGGGTTATCTTACTCAAGTGAATGAAAAGGGTAACGTTGAGCTGGTAAGAGACTCTTGGTTTGATTTTTATAGGAACATTTTGTGTAAGACTTTTTTTTTTTTTTCCTTTTTCATTCTGCATCTTGCAGTGCTGATCTTTATTTTTTTTAATAAACTAGAAGGCAGCCATAGTGGGCAGCACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

19.14

Weight (kDa)

9.99

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho1_MOS11_C	PF18592	2 - 27	2.9e-09	Tho1/MOS11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	16
AciI	CCGC	1 cut(s)	16
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	3 cut(s)	96, 109, 251
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	303
AluBI	AGCT	4 cut(s)	37, 176, 254, 355
AluI	AGCT	4 cut(s)	37, 176, 254, 355
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	3 cut(s)	96, 109, 251
ApeKI	GCWGC	3 cut(s)	34, 477, 490
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	292
BamHI	GGATCC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	46, 489
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	2 cut(s)	144, 470
BisI	GCNGC	3 cut(s)	35, 478, 491
BlsI	GCNGC	3 cut(s)	36, 479, 492
BmiI	GGNNCC	1 cut(s)	103
BmsI	GCATC	3 cut(s)	119, 184, 442
BpiI	GAAGAC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	500
Bse21I	CCTNAGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	4 cut(s)	54, 60, 275, 307
BseNI	ACTGG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	46, 489
BseYI	CCCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	101, 256, 447
BspACI	CCGC	1 cut(s)	16
BspCNI	CTCAG	4 cut(s)	53, 61, 274, 306
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	3 cut(s)	96, 109, 251
BsrBI	CCGCTC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	500
BssMI	GATC	3 cut(s)	101, 256, 447
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	42
BstDEI	CTNAG	4 cut(s)	40, 69, 261, 293
BstF5I	GGATG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	104, 259, 450
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	3 cut(s)	101, 256, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 224
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	46, 489
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
Bsu36I	CCTNAGG	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	447, 493
CfoI	GCGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	81
CviJI	RGCY	8 cut(s)	37, 143, 163, 176, 209, 254, 355, 480
CviKI_1	RGCY	8 cut(s)	37, 143, 163, 176, 209, 254, 355, 480
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	4 cut(s)	40, 69, 261, 293
DpnI	GATC	3 cut(s)	103, 258, 449
DpnII	GATC	3 cut(s)	101, 256, 447
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	27
Eco81I	CCTNAGG	1 cut(s)	261
EcoRV	GATATC	1 cut(s)	27
FaiI	YATR	2 cut(s)	384, 483
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
Fnu4HI	GCNGC	3 cut(s)	35, 478, 491
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	3 cut(s)	35, 478, 491
FspBI	CTAG	2 cut(s)	144, 470
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	35, 478, 491
GsaI	CCCAGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	1 cut(s)	365
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	133, 199, 467
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	5 cut(s)	34, 197, 227, 433, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 224
HpyF3I	CTNAG	4 cut(s)	40, 69, 261, 293
HpySE526I	ACGT	1 cut(s)	348
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	101, 256, 447
LpnPI	CCDG	7 cut(s)	135, 180, 186, 248, 280, 341, 481
Lsp1109I	GCAGC	2 cut(s)	46, 489
LweI	GCATC	3 cut(s)	119, 184, 442
MaeI	CTAG	2 cut(s)	144, 470
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	3 cut(s)	103, 258, 449
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	3 cut(s)	101, 256, 447
MboII	GAAGA	6 cut(s)	56, 59, 137, 214, 278, 281
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	6 cut(s)	66, 129, 147, 184, 270, 319
MseI	TTAA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	215, 224
NdeII	GATC	3 cut(s)	101, 256, 447
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	36, 479, 492
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Psp1406I	AACGTT	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	3 cut(s)	35, 478, 491
Sau3AI	GATC	3 cut(s)	101, 256, 447
SchI	GAGTC	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	3 cut(s)	119, 184, 442
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	2 cut(s)	144, 470
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	2 cut(s)	447, 500
TseI	GCWGC	3 cut(s)	34, 477, 490
TspDTI	ATGAA	2 cut(s)	351, 415
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	2 cut(s)	447, 500
XspI	CTAG	2 cut(s)	144, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.