Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Forward (+)

20482529 .. 20485636

Gene Structure 3108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1129600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCCACCGACACACAGAAGCCCAGCGACCCCATCACCACCTTAGAAGCCCCAAAGAAAACCCTAGAATCCTCCCCGGCCCCACCCACCGCCACAATTTCAGATCGACCCGATAATCCGTCCGCTGACACTCCCTCCGATCCACCTCCGTCGTCCGAGGTTGACTCCAAAGTAAACGGGTCTAAGGCTGACTCTGAGGATCCCAAGACTGACTCTGCCACCGGTGACGCGGCTGCTCCGGCTACCGCCATTGAGAAGAAGATGCGCCGTGCCGAGCGGTTTGGGATATCCGTGCAGCTCACAGAAAAAGAGAAACGCAACTCTCGCGCTGAGAGGTTTGGTACTGTTTCTACATCACACGGATCCGAAGCATCTAAAAAATCAGAGGACTTGAAGAGGAAGGCTAGAGCAGAGAGGTTTGGGCTTCCTGGCCCTGCTGTGGTGGGTGATGAGGATGCAAAGAAGAAGGCTCGTCTTGCTCGGTTTGCTCCTAATGCCAAACCAGATGCTAAAACTGATCCTCAGGAAGAAGAAAAAAGAAAGGCGAGGGCTCTCAGGTTTTCAAACACCTCAAAAGGTTCTCTTACTCAAGTGAATGATAAGGGTAATGTTGAGCAGAAGGCAGCCATAGCAGGCAGCGCCGGTGGAGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

23.1

Weight (kDa)

9.15

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho1_MOS11_C	PF18592	84 - 114	3.3e-11	Tho1/MOS11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	277
AccII	CGCG	2 cut(s)	230, 327
AciI	CCGC	5 cut(s)	90, 123, 230, 246, 277
AclWI	GGATC	6 cut(s)	134, 194, 207, 357, 370, 512
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgeI	ACCGGT	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	394, 564
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
AlwI	GGATC	6 cut(s)	134, 194, 207, 357, 370, 512
AoxI	GGCC	3 cut(s)	3, 78, 430
ApeKI	GCWGC	4 cut(s)	233, 295, 623, 636
AsiGI	ACCGGT	1 cut(s)	221
AspLEI	GCGC	3 cut(s)	267, 329, 641
AspS9I	GGNCC	2 cut(s)	79, 431
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	28, 236, 458
AxyI	CCTNAGG	1 cut(s)	522
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	199, 362
BanII	GRGCYC	1 cut(s)	553
BbvI	GCAGC	4 cut(s)	220, 307, 635, 648
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	77
BfaI	CTAG	2 cut(s)	65, 405
BfoI	RGCGCY	1 cut(s)	642
BisI	GCNGC	5 cut(s)	231, 234, 296, 624, 637
BlsI	GCNGC	5 cut(s)	232, 235, 297, 625, 638
Bme1390I	CCNGG	2 cut(s)	77, 429
BmgT120I	GGNCC	2 cut(s)	79, 431
BmiI	GGNNCC	3 cut(s)	81, 201, 364
BmrFI	CCNGG	2 cut(s)	77, 429
BmsI	GCATC	4 cut(s)	252, 380, 445, 496
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpuEI	CTTGAG	1 cut(s)	573
BpuMI	CCSGG	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	75, 156
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse118I	RCCGGY	2 cut(s)	221, 641
Bse21I	CCTNAGG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	75, 156
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	4 cut(s)	186, 321, 536, 568
BseXI	GCAGC	4 cut(s)	220, 307, 635, 648
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	2 cut(s)	230, 327
BshFI	GGCC	3 cut(s)	5, 80, 432
BshTI	ACCGGT	1 cut(s)	221
BsiSI	CCGG	4 cut(s)	77, 222, 239, 642
BslI	CCNNNNNNNGG	1 cut(s)	439
BsnI	GGCC	3 cut(s)	5, 80, 432
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	5 cut(s)	103, 139, 199, 362, 517
BspACI	CCGC	5 cut(s)	90, 123, 230, 246, 277
BspANI	GGCC	3 cut(s)	5, 80, 432
BspCNI	CTCAG	4 cut(s)	187, 322, 535, 567
BspFNI	CGCG	2 cut(s)	230, 327
BspLI	GGNNCC	3 cut(s)	81, 201, 364
BspPI	GGATC	6 cut(s)	134, 194, 207, 357, 370, 512
BsrBI	CCGCTC	1 cut(s)	277
BsrFI	RCCGGY	2 cut(s)	221, 641
BssAI	RCCGGY	2 cut(s)	221, 641
BssECI	CCNNGG	2 cut(s)	75, 156
BssMI	GATC	5 cut(s)	103, 139, 199, 362, 517
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	6 cut(s)	43, 183, 195, 330, 522, 554
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	2 cut(s)	230, 327
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	3 cut(s)	267, 329, 641
BstKTI	GATC	5 cut(s)	106, 142, 202, 365, 520
BstMBI	GATC	5 cut(s)	103, 139, 199, 362, 517
BstMWI	GCNNNNNNNGC	7 cut(s)	239, 324, 476, 485, 494, 629, 638
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	75, 427
BstUI	CGCG	2 cut(s)	230, 327
BstV1I	GCAGC	4 cut(s)	220, 307, 635, 648
BstX2I	RGATCY	2 cut(s)	199, 362
BstYI	RGATCY	2 cut(s)	199, 362
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	5, 80, 432
BtsCI	GGATG	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	634
CfoI	GCGC	3 cut(s)	267, 329, 641
Cfr10I	RCCGGY	2 cut(s)	221, 641
Cfr13I	GGNCC	2 cut(s)	79, 431
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	342
CspAI	ACCGGT	1 cut(s)	221
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	6 cut(s)	43, 183, 195, 330, 522, 554
DpnI	GATC	5 cut(s)	105, 141, 201, 364, 519
DpnII	GATC	5 cut(s)	103, 139, 199, 362, 517
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco24I	GRGCYC	1 cut(s)	553
Eco32I	GATATC	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	427
EcoRV	GATATC	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	553
FaiI	YATR	1 cut(s)	629
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
Fnu4HI	GCNGC	5 cut(s)	231, 234, 296, 624, 637
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	553
Fsp4HI	GCNGC	5 cut(s)	231, 234, 296, 624, 637
FspBI	CTAG	2 cut(s)	65, 405
GlaI	GCGC	3 cut(s)	266, 328, 640
GluI	GCNGC	5 cut(s)	231, 234, 296, 624, 637
GsaI	CCCAGC	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	3 cut(s)	5, 80, 432
HapII	CCGG	4 cut(s)	77, 222, 239, 642
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	3 cut(s)	267, 329, 641
Hin6I	GCGC	3 cut(s)	265, 327, 639
HinP1I	GCGC	3 cut(s)	265, 327, 639
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	4 cut(s)	68, 164, 191, 212
HpaII	CCGG	4 cut(s)	77, 222, 239, 642
HphI	GGTGA	3 cut(s)	28, 236, 458
Hpy166II	GTNNAC	2 cut(s)	163, 175
Hpy188I	TCNGA	6 cut(s)	103, 139, 157, 196, 367, 385
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	2 cut(s)	163, 175
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	394, 460, 613
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	2 cut(s)	295, 458
HpyF10VI	GCNNNNNNNGC	7 cut(s)	239, 324, 476, 485, 494, 629, 638
HpyF3I	CTNAG	6 cut(s)	43, 183, 195, 330, 522, 554
HspAI	GCGC	3 cut(s)	265, 327, 639
Kzo9I	GATC	5 cut(s)	103, 139, 199, 362, 517
LmnI	GCTCC	2 cut(s)	241, 493
Lsp1109I	GCAGC	4 cut(s)	220, 307, 635, 648
LweI	GCATC	4 cut(s)	252, 380, 445, 496
MaeI	CTAG	2 cut(s)	65, 405
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	5 cut(s)	105, 141, 201, 364, 519
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	5 cut(s)	103, 139, 199, 362, 517
MboII	GAAGA	6 cut(s)	268, 271, 406, 475, 539, 542
MflI	RGATCY	2 cut(s)	199, 362
MhlI	GDGCHC	1 cut(s)	553
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	158, 185, 206
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	4 cut(s)	77, 222, 239, 642
MspR9I	CCNGG	2 cut(s)	77, 429
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	2 cut(s)	230, 327
MwoI	GCNNNNNNNGC	7 cut(s)	239, 324, 476, 485, 494, 629, 638
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	5 cut(s)	103, 139, 199, 362, 517
NlaIV	GGNNCC	3 cut(s)	81, 201, 364
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	221
PkrI	GCNGC	5 cut(s)	232, 235, 297, 625, 638
PleI	GAGTC	3 cut(s)	158, 185, 206
PpsI	GAGTC	3 cut(s)	158, 185, 206
Psp6I	CCWGG	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	3 cut(s)	81, 201, 364
PspPI	GGNCC	2 cut(s)	79, 431
PsuI	RGATCY	2 cut(s)	199, 362
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SatI	GCNGC	5 cut(s)	231, 234, 296, 624, 637
Sau3AI	GATC	5 cut(s)	103, 139, 199, 362, 517
Sau96I	GGNCC	2 cut(s)	79, 431
SchI	GAGTC	3 cut(s)	158, 185, 206
ScrFI	CCNGG	2 cut(s)	77, 429
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	4 cut(s)	252, 380, 445, 496
SgrAI	CRCCGGYG	2 cut(s)	221, 641
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	5 cut(s)	90, 123, 230, 246, 277
SspMI	CTAG	2 cut(s)	65, 405
StyD4I	CCNGG	2 cut(s)	75, 427
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	106
TasI	AATT	1 cut(s)	96
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	4 cut(s)	233, 295, 623, 636
Tsp45I	GTSAC	1 cut(s)	224
TspGWI	ACGGA	4 cut(s)	108, 138, 280, 375
XspI	CTAG	2 cut(s)	65, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.