Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Forward (+)

35451722 .. 35455022

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCACCATCGATACCCAGAAACCCACCGACACCACTCCCGCCGTCGAAAACCCTACCAAAGCCGTCGACCCCCCGGCCCCAGCCGCCGCGCCTAAACCAGATCTCCCCGTAGACCCTCCCACCGAGACTCCCGCCCCTACAGCCCTACCCTCCGCGGTTGACTCATCTGAAAACGGGTCCAAGGCGGACTCCGAGGACCCCAAGACCGCCGCGGCCGCAGAGGATGGCGCTGCTCCGGCTTCTATTATTGAGAAGAAGATCCGCCGTGCCGAGCGCTTCGGTATATCTGTGCAGCTCACTGAAGAAGAGAAGCGCAATTCTCGAGCTGAAAGATTTGGTACTGTTTCTACATCGCATGGATCAGAAGCATCCAAAAAGTCTGAGGAGCTGAAGAGAAAGGCTAGAGCAGAGAGGTTTGGGATTGCTGCTCCACCTGTGGCAAGTGATGAGGATGCGAGGAAGAAAGCTCGACTGGCCCGATTTGCACCTGTTTCTAAGACTACTAAACCTGACCCTCAGGAAGAAGAAAAAAGGAAGGCAAGGTCACTCAGGTTTTCAAATGGTTCTGCAGGTTCTCTCTCTCAAGTGAATGACAAGGGAAATATTGAGCAGGCAGCAATTGCAGGCGGTGCTGTAGGAAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

22.63

Weight (kDa)

8.73

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho1_MOS11_C	PF18592	84 - 114	9.4e-12	Tho1/MOS11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	563
AccI	GTMKAC	2 cut(s)	69, 114
AccII	CGCG	3 cut(s)	92, 158, 215
AclWI	GGATC	2 cut(s)	256, 370
AcoI	YGGCCR	2 cut(s)	3, 216
AcuI	CTGAAG	2 cut(s)	324, 413
AfaI	GTAC	1 cut(s)	343
AfeI	AGCGCT	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	561
AluBI	AGCT	4 cut(s)	298, 329, 391, 470
AluI	AGCT	4 cut(s)	298, 329, 391, 470
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	2 cut(s)	256, 370
Ama87I	CYCGRG	1 cut(s)	324
Aor51HI	AGCGCT	1 cut(s)	278
AoxI	GGCC	4 cut(s)	3, 78, 216, 477
ApeKI	GCWGC	4 cut(s)	233, 295, 428, 617
AspLEI	GCGC	4 cut(s)	94, 233, 279, 318
AspS9I	GGNCC	4 cut(s)	79, 180, 199, 478
AsuC2I	CCSGG	1 cut(s)	77
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	2 cut(s)	180, 199
AxyI	CCTNAGG	1 cut(s)	519
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	220, 307, 415, 629
BccI	CCATC	2 cut(s)	17, 221
BceAI	ACGGC	3 cut(s)	29, 50, 252
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	3 cut(s)	141, 570, 636
BfoI	RGCGCY	2 cut(s)	234, 280
BfuAI	ACCTGC	1 cut(s)	563
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	9 cut(s)	87, 90, 213, 216, 219, 234, 296, 429, 618
BlsI	GCNGC	9 cut(s)	88, 91, 214, 217, 220, 235, 297, 430, 619
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	180, 199
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	4 cut(s)	79, 180, 199, 478
BmiI	GGNNCC	3 cut(s)	81, 181, 201
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	380, 445
BpuEI	CTTGAG	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	12
BsaJI	CCNNGG	5 cut(s)	75, 156, 183, 195, 213
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 115, 120, 145
Bse1I	ACTGG	1 cut(s)	480
Bse21I	CCTNAGG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	5 cut(s)	75, 156, 183, 195, 213
BseGI	GGATG	3 cut(s)	232, 371, 460
BseMII	CTCAG	3 cut(s)	375, 533, 565
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	401
BseX3I	CGGCCG	1 cut(s)	216
BseXI	GCAGC	4 cut(s)	220, 307, 415, 629
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	3 cut(s)	92, 158, 215
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	4 cut(s)	5, 80, 218, 479
BshVI	ATCGAT	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	77, 239
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	4 cut(s)	5, 80, 218, 479
BsoBI	CYCGRG	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	103, 261, 362
BspANI	GGCC	4 cut(s)	5, 80, 218, 479
BspCNI	CTCAG	3 cut(s)	376, 532, 564
BspDI	ATCGAT	1 cut(s)	12
BspFNI	CGCG	3 cut(s)	92, 158, 215
BspLI	GGNNCC	3 cut(s)	81, 181, 201
BspMAI	CTGCAG	1 cut(s)	574
BspMI	ACCTGC	1 cut(s)	563
BspPI	GGATC	2 cut(s)	256, 370
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	5 cut(s)	75, 156, 183, 195, 213
BssMI	GATC	3 cut(s)	103, 261, 362
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	303, 389
BstAPI	GCANNNNNTGC	2 cut(s)	623, 632
BstC8I	GCNNGC	2 cut(s)	615, 628
BstDEI	CTNAG	4 cut(s)	384, 498, 519, 551
BstDSI	CCRYGG	2 cut(s)	156, 213
BstF5I	GGATG	3 cut(s)	232, 371, 460
BstFNI	CGCG	3 cut(s)	92, 158, 215
BstH2I	RGCGCY	2 cut(s)	234, 280
BstHHI	GCGC	4 cut(s)	94, 233, 279, 318
BstKTI	GATC	3 cut(s)	106, 264, 365
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	3 cut(s)	103, 261, 362
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 143, 218, 239, 476, 485, 623, 632
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	3 cut(s)	141, 570, 636
BstUI	CGCG	3 cut(s)	92, 158, 215
BstV1I	GCAGC	4 cut(s)	220, 307, 415, 629
BstX2I	RGATCY	2 cut(s)	103, 261
BstYI	RGATCY	2 cut(s)	103, 261
BstZI	CGGCCG	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	4 cut(s)	5, 80, 218, 479
BsuTUI	ATCGAT	1 cut(s)	12
BtgI	CCRYGG	2 cut(s)	156, 213
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	3 cut(s)	232, 371, 460
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	563
Cac8I	GCNNGC	2 cut(s)	615, 628
CciNI	GCGGCCGC	1 cut(s)	216
CfoI	GCGC	4 cut(s)	94, 233, 279, 318
Cfr13I	GGNCC	4 cut(s)	79, 180, 199, 478
Cfr42I	CCGCGG	2 cut(s)	159, 216
ClaI	ATCGAT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	359, 648
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	4 cut(s)	384, 498, 519, 551
DpnI	GATC	3 cut(s)	105, 263, 364
DpnII	GATC	3 cut(s)	103, 261, 362
EaeI	YGGCCR	2 cut(s)	3, 216
EagI	CGGCCG	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	303, 389
EarI	CTCTTC	2 cut(s)	303, 389
EciI	GGCGGA	2 cut(s)	203, 254
EclXI	CGGCCG	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	180, 199
Eco47III	AGCGCT	1 cut(s)	278
Eco52I	CGGCCG	1 cut(s)	216
Eco57I	CTGAAG	2 cut(s)	324, 413
Eco81I	CCTNAGG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	362, 651
FaiI	YATR	3 cut(s)	287, 360, 649
FatI	CATG	2 cut(s)	358, 647
FauI	CCCGC	2 cut(s)	49, 142
FblI	GTMKAC	2 cut(s)	69, 114
Fnu4HI	GCNGC	9 cut(s)	87, 90, 213, 216, 219, 234, 296, 429, 618
FokI	GGATG	3 cut(s)	239, 358, 467
Fsp4HI	GCNGC	9 cut(s)	87, 90, 213, 216, 219, 234, 296, 429, 618
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	4 cut(s)	93, 232, 278, 317
GluI	GCNGC	9 cut(s)	87, 90, 213, 216, 219, 234, 296, 429, 618
GsaI	CCCAGC	1 cut(s)	86
HaeII	RGCGCY	2 cut(s)	234, 280
HaeIII	GGCC	4 cut(s)	5, 80, 218, 479
HapII	CCGG	2 cut(s)	77, 239
HhaI	GCGC	4 cut(s)	94, 233, 279, 318
Hin1II	CATG	2 cut(s)	362, 651
Hin6I	GCGC	4 cut(s)	92, 231, 277, 316
HinP1I	GCGC	4 cut(s)	92, 231, 277, 316
HincII	GTYRAC	2 cut(s)	70, 163
HindII	GTYRAC	2 cut(s)	70, 163
HinfI	GANTC	3 cut(s)	130, 164, 191
HpaII	CCGG	2 cut(s)	77, 239
Hpy166II	GTNNAC	3 cut(s)	70, 115, 163
Hpy188I	TCNGA	4 cut(s)	172, 196, 367, 385
Hpy188III	TCNNGA	2 cut(s)	324, 521
Hpy8I	GTNNAC	3 cut(s)	70, 115, 163
Hpy99I	CGWCG	2 cut(s)	50, 71
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	295, 488, 572, 626
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 143, 218, 239, 476, 485, 623, 632
HpyF3I	CTNAG	4 cut(s)	384, 498, 519, 551
Hsp92II	CATG	2 cut(s)	362, 651
HspAI	GCGC	4 cut(s)	92, 231, 277, 316
KspI	CCGCGG	2 cut(s)	159, 216
Kzo9I	GATC	3 cut(s)	103, 261, 362
LmnI	GCTCC	3 cut(s)	241, 388, 436
Lsp1109I	GCAGC	4 cut(s)	220, 307, 415, 629
LweI	GCATC	2 cut(s)	380, 445
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	546
MalI	GATC	3 cut(s)	105, 263, 364
MboI	GATC	3 cut(s)	103, 261, 362
MboII	GAAGA	8 cut(s)	268, 271, 317, 320, 406, 475, 536, 539
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	2 cut(s)	103, 261
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	319, 621
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	124, 158, 185
MnlI	CCTC	9 cut(s)	129, 163, 190, 217, 379, 408, 445, 453, 528
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	158, 215
MspI	CCGG	2 cut(s)	77, 239
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	621
MvnI	CGCG	3 cut(s)	92, 158, 215
MwoI	GCNNNNNNNGC	8 cut(s)	86, 143, 218, 239, 476, 485, 623, 632
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	3 cut(s)	103, 261, 362
NlaIII	CATG	2 cut(s)	362, 651
NlaIV	GGNNCC	3 cut(s)	81, 181, 201
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	546
NotI	GCGGCCGC	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PkrI	GCNGC	9 cut(s)	88, 91, 214, 217, 220, 235, 297, 430, 619
PleI	GAGTC	3 cut(s)	124, 158, 185
PpsI	GAGTC	3 cut(s)	124, 158, 185
PpuMI	RGGWCCY	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	82
PspN4I	GGNNCC	3 cut(s)	81, 181, 201
PspPI	GGNCC	4 cut(s)	79, 180, 199, 478
PspPPI	RGGWCCY	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	574
PsuI	RGATCY	2 cut(s)	103, 261
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SacII	CCGCGG	2 cut(s)	159, 216
SalI	GTCGAC	1 cut(s)	68
SatI	GCNGC	9 cut(s)	87, 90, 213, 216, 219, 234, 296, 429, 618
Sau3AI	GATC	3 cut(s)	103, 261, 362
Sau96I	GGNCC	4 cut(s)	79, 180, 199, 478
SchI	GAGTC	3 cut(s)	124, 158, 185
ScrFI	CCNGG	1 cut(s)	77
SfaNI	GCATC	2 cut(s)	380, 445
SfcI	CTRYAG	3 cut(s)	141, 570, 636
Sfr274I	CTCGAG	1 cut(s)	324
Sfr303I	CCGCGG	2 cut(s)	159, 216
SgrBI	CCGCGG	2 cut(s)	159, 216
SinI	GGWCC	2 cut(s)	180, 199
SlaI	CTCGAG	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	324, 585
SmoI	CTYRAG	2 cut(s)	324, 585
Sse9I	AATT	2 cut(s)	319, 621
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	5 cut(s)	12, 48, 69, 325, 472
TasI	AATT	2 cut(s)	319, 621
TauI	GCSGC	5 cut(s)	89, 92, 215, 218, 221
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	4 cut(s)	233, 295, 428, 617
Tsp45I	GTSAC	1 cut(s)	546
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	180, 199
XhoI	CTCGAG	1 cut(s)	324
XmiI	GTMKAC	2 cut(s)	69, 114
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.