Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Forward (+)

7289520 .. 7290678

Gene Structure 1159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0093300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAAGCAGCAGCACCTTCTTCAACCGGAACCAGTGAACGCACCCTTACCAGAAGGCCCTCAGTCTCTTCCTCCTTTCGCCTCCGCAGCCCGAGTCTTAATTCTCTCCGCCTCCTCCGCATCTTTGATGTTTTCGACAAGAACCGCGACGGCATGGTCAGCGCCGAAGAGATCAGCCAGGCTCTAGGACTCCTCGGCCTGGACGTCGAAGTTTCCGAGCTGGAGCGCACCATCCGGACCTTCATCCAGCCCGGAAACGAAGGCCTCAAGTTCGAGGATTTCGTAGGGCTCCACCAGTCCCTTTACGATACATTCTTCTTCGACGGTGATGACATTGGAAATGCGGTGGAAGAGGCGGCTGCCGCGGTGGTGGCAGCGCGGGATGAGGAGGAGGCAAAGAAGTTGCAGGAGGAATCGGATCTAAGGGAGGCGTTCAAGGTGTTTGATGAAGATGGAGATGGTTACATATCGGCAAAGGAGCTGCAGACGGTGCTTGGGAAGCTAGGGTTTCCGGAAGGGAATGAGATTGATAGAGTGGAGAAGATGATTACTTCCGTTGACCGGAACCACGACGGCCTCGTTGACTTGTTCGAATTTAAGCACATGATGCGCAGTACCCTTCTTGTTCCTTCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.59

Weight (kDa)

4.57

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	37 - 96	2.3e-06	EF-hand domain pair
EF-hand_6	PF13405	38 - 66	3.7e-06	EF-hand domain
EF-hand_7	PF13499	138 - 204	2e-14	EF-hand domain pair
EF-hand_1	PF00036	140 - 167	3.5e-08	EF hand domain
EF-hand_6	PF13405	140 - 169	5.4e-09	EF-hand domain
EF-hand_5	PF13202	141 - 165	3.3e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AatII	GACGTC	1 cut(s)	207
Acc16I	TGCGCA	1 cut(s)	611
AccII	CGCG	3 cut(s)	147, 365, 379
AccIII	TCCGGA	2 cut(s)	234, 511
AciI	CCGC	9 cut(s)	85, 109, 118, 145, 344, 356, 363, 365, 379
AclWI	GGATC	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	593
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	2 cut(s)	199, 561
AgsI	TTSAA	2 cut(s)	24, 436
AjnI	CCWGG	2 cut(s)	177, 198
AluBI	AGCT	3 cut(s)	220, 481, 502
AluI	AGCT	3 cut(s)	220, 481, 502
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	426
Ama87I	CYCGRG	1 cut(s)	91
Aor13HI	TCCGGA	2 cut(s)	234, 511
AoxI	GGCC	4 cut(s)	56, 196, 262, 574
ApeKI	GCWGC	6 cut(s)	8, 11, 87, 359, 374, 481
ApoI	RAATTY	1 cut(s)	593
AspLEI	GCGC	4 cut(s)	164, 228, 379, 612
AspS9I	GGNCC	2 cut(s)	57, 237
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	338
AsuII	TTCGAA	1 cut(s)	591
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	291
BbvI	GCAGC	6 cut(s)	20, 23, 99, 346, 386, 468
BccI	CCATC	3 cut(s)	239, 446, 452
BceAI	ACGGC	2 cut(s)	166, 589
BciT130I	CCWGG	2 cut(s)	179, 200
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	185, 503
BfmI	CTRYAG	1 cut(s)	482
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	8 cut(s)	9, 12, 88, 357, 360, 363, 375, 482
BlsI	GCNGC	8 cut(s)	10, 13, 89, 358, 361, 364, 376, 483
Bme1390I	CCNGG	3 cut(s)	179, 200, 252
Bme18I	GGWCC	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	57, 237
BmiI	GGNNCC	3 cut(s)	31, 290, 566
BmrFI	CCNGG	3 cut(s)	179, 200, 252
BmsI	GCATC	2 cut(s)	129, 597
BpmI	CTGGAG	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	193, 363
BsaWI	WCCGGW	4 cut(s)	26, 234, 511, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 561
Bse1I	ACTGG	2 cut(s)	33, 295
BseAI	TCCGGA	2 cut(s)	234, 511
BseBI	CCWGG	2 cut(s)	179, 200
BseDI	CCNNGG	2 cut(s)	193, 363
BseGI	GGATG	3 cut(s)	231, 243, 388
BseLI	CCNNNNNNNGG	2 cut(s)	199, 561
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	33, 295
BseRI	GAGGAG	4 cut(s)	104, 182, 401, 404
BseXI	GCAGC	6 cut(s)	20, 23, 99, 346, 386, 468
Bsh1236I	CGCG	3 cut(s)	147, 365, 379
BshFI	GGCC	4 cut(s)	58, 198, 264, 576
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	5 cut(s)	27, 235, 252, 512, 562
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	199, 561
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	58, 198, 264, 576
BsoBI	CYCGRG	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	591
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp13I	TCCGGA	2 cut(s)	234, 511
Bsp143I	GATC	2 cut(s)	171, 418
BspACI	CCGC	9 cut(s)	85, 109, 118, 145, 344, 356, 363, 365, 379
BspANI	GGCC	4 cut(s)	58, 198, 264, 576
BspCNI	CTCAG	1 cut(s)	74
BspEI	TCCGGA	2 cut(s)	234, 511
BspFNI	CGCG	3 cut(s)	147, 365, 379
BspLI	GGNNCC	3 cut(s)	31, 290, 566
BspMAI	CTGCAG	1 cut(s)	486
BspPI	GGATC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	33, 295
BssECI	CCNNGG	2 cut(s)	193, 363
BssMI	GATC	2 cut(s)	171, 418
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	179, 200
Bst4CI	ACNGT	2 cut(s)	326, 490
Bst6I	CTCTTC	3 cut(s)	73, 162, 345
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	2 cut(s)	490, 607
BstBI	TTCGAA	1 cut(s)	591
BstDEI	CTNAG	2 cut(s)	61, 422
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	231, 243, 388
BstFNI	CGCG	3 cut(s)	147, 365, 379
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	4 cut(s)	164, 228, 379, 612
BstKTI	GATC	2 cut(s)	174, 421
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	171, 418
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 117, 159, 362, 371, 490, 499, 607
BstNI	CCWGG	2 cut(s)	179, 200
BstSCI	CCNGG	3 cut(s)	177, 198, 250
BstSFI	CTRYAG	1 cut(s)	482
BstUI	CGCG	3 cut(s)	147, 365, 379
BstV1I	GCAGC	6 cut(s)	20, 23, 99, 346, 386, 468
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	4 cut(s)	58, 198, 264, 576
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	3 cut(s)	231, 243, 388
BtsIMutI	CAGTG	1 cut(s)	40
CfoI	GCGC	4 cut(s)	164, 228, 379, 612
Cfr13I	GGNCC	2 cut(s)	57, 237
Cfr42I	CCGCGG	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	615
CviAII	CATG	2 cut(s)	154, 604
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	2 cut(s)	61, 422
DpnI	GATC	2 cut(s)	173, 420
DpnII	GATC	2 cut(s)	171, 418
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	3 cut(s)	73, 162, 345
EarI	CTCTTC	3 cut(s)	73, 162, 345
EciI	GGCGGA	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	177, 198
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	2 cut(s)	157, 607
FaiI	YATR	3 cut(s)	155, 467, 605
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	2 cut(s)	153, 603
FauI	CCCGC	1 cut(s)	372
Fnu4HI	GCNGC	8 cut(s)	9, 12, 88, 357, 360, 363, 375, 482
FokI	GGATG	3 cut(s)	218, 230, 395
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	8 cut(s)	9, 12, 88, 357, 360, 363, 375, 482
FspBI	CTAG	2 cut(s)	185, 503
FspI	TGCGCA	1 cut(s)	611
GlaI	GCGC	4 cut(s)	163, 227, 378, 611
GluI	GCNGC	8 cut(s)	9, 12, 88, 357, 360, 363, 375, 482
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	4 cut(s)	58, 198, 264, 576
HapII	CCGG	5 cut(s)	27, 235, 252, 512, 562
HhaI	GCGC	4 cut(s)	164, 228, 379, 612
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	157, 607
Hin6I	GCGC	4 cut(s)	162, 226, 377, 610
HinP1I	GCGC	4 cut(s)	162, 226, 377, 610
HincII	GTYRAC	2 cut(s)	559, 583
HindII	GTYRAC	2 cut(s)	559, 583
HinfI	GANTC	3 cut(s)	94, 189, 413
HpaII	CCGG	5 cut(s)	27, 235, 252, 512, 562
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	3 cut(s)	38, 559, 583
Hpy188I	TCNGA	2 cut(s)	217, 418
Hpy188III	TCNNGA	3 cut(s)	235, 512, 636
Hpy8I	GTNNAC	3 cut(s)	38, 559, 583
Hpy99I	CGWCG	4 cut(s)	152, 209, 326, 575
HpyAV	CCTTC	7 cut(s)	27, 48, 250, 254, 509, 629, 639
HpyCH4III	ACNGT	2 cut(s)	326, 490
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	406, 484
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 117, 159, 362, 371, 490, 499, 607
HpyF3I	CTNAG	2 cut(s)	61, 422
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	157, 607
HspAI	GCGC	4 cut(s)	162, 226, 377, 610
Kpn2I	TCCGGA	2 cut(s)	234, 511
KspI	CCGCGG	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	171, 418
LmnI	GCTCC	3 cut(s)	223, 294, 478
Lsp1109I	GCAGC	6 cut(s)	20, 23, 99, 346, 386, 468
LweI	GCATC	2 cut(s)	129, 597
MaeI	CTAG	2 cut(s)	185, 503
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	2 cut(s)	173, 420
MboI	GATC	2 cut(s)	171, 418
MboII	GAAGA	8 cut(s)	12, 60, 179, 307, 310, 362, 461, 553
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	2 cut(s)	100, 593
MlyI	GAGTC	2 cut(s)	103, 183
MroI	TCCGGA	2 cut(s)	234, 511
MseI	TTAA	2 cut(s)	99, 597
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	5 cut(s)	27, 235, 252, 512, 562
MspR9I	CCNGG	3 cut(s)	179, 200, 252
MvaI	CCWGG	2 cut(s)	179, 200
MvnI	CGCG	3 cut(s)	147, 365, 379
MwoI	GCNNNNNNNGC	8 cut(s)	87, 117, 159, 362, 371, 490, 499, 607
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	171, 418
NlaIII	CATG	2 cut(s)	157, 607
NlaIV	GGNNCC	3 cut(s)	31, 290, 566
NmeAIII	GCCGAG	1 cut(s)	174
NsbI	TGCGCA	1 cut(s)	611
NspV	TTCGAA	1 cut(s)	591
PceI	AGGCCT	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	4 cut(s)	201, 213, 279, 576
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	8 cut(s)	10, 13, 89, 358, 361, 364, 376, 483
PleI	GAGTC	2 cut(s)	102, 183
PpsI	GAGTC	2 cut(s)	102, 183
Psp6I	CCWGG	2 cut(s)	177, 198
PspGI	CCWGG	2 cut(s)	177, 198
PspN4I	GGNNCC	3 cut(s)	31, 290, 566
PspPI	GGNCC	2 cut(s)	57, 237
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
SacII	CCGCGG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	99, 597
SatI	GCNGC	8 cut(s)	9, 12, 88, 357, 360, 363, 375, 482
Sau3AI	GATC	2 cut(s)	171, 418
Sau96I	GGNCC	2 cut(s)	57, 237
SchI	GAGTC	2 cut(s)	103, 183
ScrFI	CCNGG	3 cut(s)	179, 200, 252
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	7 cut(s)	19, 207, 222, 242, 441, 483, 504
SfaNI	GCATC	2 cut(s)	129, 597
SfcI	CTRYAG	1 cut(s)	482
Sfr303I	CCGCGG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	591
SgrBI	CCGCGG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	100, 593
SseBI	AGGCCT	1 cut(s)	264
SsiI	CCGC	9 cut(s)	85, 109, 118, 145, 344, 356, 363, 365, 379
SspMI	CTAG	2 cut(s)	185, 503
StuI	AGGCCT	1 cut(s)	264
StyD4I	CCNGG	3 cut(s)	177, 198, 250
TaaI	ACNGT	2 cut(s)	326, 490
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	5 cut(s)	135, 207, 273, 321, 591
TasI	AATT	2 cut(s)	100, 593
TauI	GCSGC	2 cut(s)	359, 365
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	99, 597
Tru9I	TTAA	2 cut(s)	99, 597
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	6 cut(s)	8, 11, 87, 359, 374, 481
TspDTI	ATGAA	2 cut(s)	232, 462
TspGWI	ACGGA	1 cut(s)	544
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	1 cut(s)	593
XspI	CTAG	2 cut(s)	185, 503
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.