Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Reverse (-)

12401733 .. 12405263

Gene Structure 3531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG141400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCCAGCATCGATACCCAGAAACCCACCGACACCACTCCCGCCGTCGAAAACCCTACCAAAGCCGTCGACCCCCCGGCCCCAGCCGCCGCGCCTAAACCAGATCTCCCCGTAGACCCTCCCACCGAGACTCCCGCCCCTACAGCCCCACCCTCCGCCGTTGACTCAGCTGAAAACGTGTCCAAGGCGGACTCCGAGGACCCCAAGACCGCTGCGGCCGCAGAGGATGGCGCTGCTCCGGCTTCTGTTGTTGAGAAGAAGATCCGCCGCGCCGAGCGCTTCGGTATATCTGTGCAGCTCACTGAAGAAGAGAAGCGCAATTCTCGAGCTGAAAGATTTGGTACTGTTTCTACATCACATGGATCAGAAGCATCCAAAAAGTCTGAGGAGCTGAAGAGAAAGGCTAGAGCAGAGAGGTTTGGGATTGCTGCTCCACCTGTGGCAAGTGATGAGGATGCGAGGAAGAAAGCTCGACTGGCCCGATTTGCACCTGTTTCTAAGACTGCTAAACCTGACCCTCAGGAAGAAGAAAAAAGGAAGGCAAGGTCACTCAGGTATGGTGTCAGTGCAGGCCATCTACATATTTTGTTATTCGATCAGTTTATCACTTGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

21.87

Weight (kDa)

7.82

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho1_MOS11_C	PF18592	85 - 114	1.2e-11	Tho1/MOS11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	69, 114
AccII	CGCG	2 cut(s)	92, 270
AclWI	GGATC	2 cut(s)	256, 370
AcoI	YGGCCR	2 cut(s)	3, 216
AcuI	CTGAAG	2 cut(s)	324, 413
AfaI	GTAC	1 cut(s)	343
AfeI	AGCGCT	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	177
AluBI	AGCT	6 cut(s)	170, 298, 329, 391, 470, 615
AluI	AGCT	6 cut(s)	170, 298, 329, 391, 470, 615
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	2 cut(s)	256, 370
Ama87I	CYCGRG	1 cut(s)	324
Aor51HI	AGCGCT	1 cut(s)	278
AoxI	GGCC	5 cut(s)	3, 78, 216, 477, 571
ApeKI	GCWGC	4 cut(s)	212, 233, 295, 428
AspLEI	GCGC	5 cut(s)	94, 233, 272, 279, 318
AspS9I	GGNCC	3 cut(s)	79, 199, 478
AsuC2I	CCSGG	1 cut(s)	77
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	199
AxyI	CCTNAGG	1 cut(s)	519
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	199, 220, 307, 415
BccI	CCATC	2 cut(s)	221, 582
BceAI	ACGGC	3 cut(s)	29, 50, 143
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	2 cut(s)	234, 280
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	9 cut(s)	87, 90, 213, 216, 219, 234, 268, 296, 429
BlsI	GCNGC	9 cut(s)	88, 91, 214, 217, 220, 235, 269, 297, 430
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	3 cut(s)	79, 199, 478
BmiI	GGNNCC	2 cut(s)	81, 201
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	3 cut(s)	18, 380, 445
BpuMI	CCSGG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	75, 183, 195
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 115, 120, 145
Bse1I	ACTGG	1 cut(s)	480
Bse21I	CCTNAGG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	75, 183, 195
BseGI	GGATG	3 cut(s)	232, 371, 460
BseMII	CTCAG	4 cut(s)	180, 375, 533, 565
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	401
BseX3I	CGGCCG	1 cut(s)	216
BseXI	GCAGC	4 cut(s)	199, 220, 307, 415
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	2 cut(s)	314, 588
Bsh1236I	CGCG	2 cut(s)	92, 270
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	5 cut(s)	5, 80, 218, 479, 573
BshVI	ATCGAT	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	77, 239
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	5 cut(s)	5, 80, 218, 479, 573
BsoBI	CYCGRG	1 cut(s)	324
Bsp143I	GATC	4 cut(s)	103, 261, 362, 595
BspANI	GGCC	5 cut(s)	5, 80, 218, 479, 573
BspCNI	CTCAG	4 cut(s)	179, 376, 532, 564
BspDI	ATCGAT	1 cut(s)	12
BspFNI	CGCG	2 cut(s)	92, 270
BspLI	GGNNCC	2 cut(s)	81, 201
BspPI	GGATC	2 cut(s)	256, 370
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	3 cut(s)	75, 183, 195
BssMI	GATC	4 cut(s)	103, 261, 362, 595
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	303, 389
BstC8I	GCNNGC	2 cut(s)	7, 571
BstDEI	CTNAG	5 cut(s)	166, 384, 498, 519, 551
BstF5I	GGATG	3 cut(s)	232, 371, 460
BstFNI	CGCG	2 cut(s)	92, 270
BstH2I	RGCGCY	2 cut(s)	234, 280
BstHHI	GCGC	5 cut(s)	94, 233, 272, 279, 318
BstKTI	GATC	4 cut(s)	106, 264, 365, 598
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	4 cut(s)	103, 261, 362, 595
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 143, 218, 239, 276, 476, 485
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	2 cut(s)	92, 270
BstV1I	GCAGC	4 cut(s)	199, 220, 307, 415
BstX2I	RGATCY	2 cut(s)	103, 261
BstYI	RGATCY	2 cut(s)	103, 261
BstZI	CGGCCG	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	5 cut(s)	5, 80, 218, 479, 573
BsuTUI	ATCGAT	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	232, 371, 460
BtsIMutI	CAGTG	2 cut(s)	300, 571
Cac8I	GCNNGC	2 cut(s)	7, 571
CciNI	GCGGCCGC	1 cut(s)	216
CfoI	GCGC	5 cut(s)	94, 233, 272, 279, 318
Cfr13I	GGNCC	3 cut(s)	79, 199, 478
ClaI	ATCGAT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	1 cut(s)	359
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	5 cut(s)	166, 384, 498, 519, 551
DpnI	GATC	4 cut(s)	105, 263, 364, 597
DpnII	GATC	4 cut(s)	103, 261, 362, 595
EaeI	YGGCCR	2 cut(s)	3, 216
EagI	CGGCCG	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	303, 389
EarI	CTCTTC	2 cut(s)	303, 389
EciI	GGCGGA	3 cut(s)	145, 203, 254
EclXI	CGGCCG	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	199
Eco47III	AGCGCT	1 cut(s)	278
Eco52I	CGGCCG	1 cut(s)	216
Eco57I	CTGAAG	2 cut(s)	324, 413
Eco81I	CCTNAGG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	362
FaiI	YATR	4 cut(s)	287, 360, 558, 582
FatI	CATG	1 cut(s)	358
FauI	CCCGC	2 cut(s)	49, 142
FblI	GTMKAC	2 cut(s)	69, 114
Fnu4HI	GCNGC	9 cut(s)	87, 90, 213, 216, 219, 234, 268, 296, 429
FokI	GGATG	3 cut(s)	239, 358, 467
Fsp4HI	GCNGC	9 cut(s)	87, 90, 213, 216, 219, 234, 268, 296, 429
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	5 cut(s)	93, 232, 271, 278, 317
GluI	GCNGC	9 cut(s)	87, 90, 213, 216, 219, 234, 268, 296, 429
GsaI	CCCAGC	1 cut(s)	86
HaeII	RGCGCY	2 cut(s)	234, 280
HaeIII	GGCC	5 cut(s)	5, 80, 218, 479, 573
HapII	CCGG	2 cut(s)	77, 239
HhaI	GCGC	5 cut(s)	94, 233, 272, 279, 318
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	5 cut(s)	92, 231, 270, 277, 316
HinP1I	GCGC	5 cut(s)	92, 231, 270, 277, 316
HincII	GTYRAC	2 cut(s)	70, 163
HindII	GTYRAC	2 cut(s)	70, 163
HinfI	GANTC	3 cut(s)	130, 164, 191
HpaII	CCGG	2 cut(s)	77, 239
Hpy166II	GTNNAC	3 cut(s)	70, 115, 163
Hpy188I	TCNGA	3 cut(s)	196, 367, 385
Hpy188III	TCNNGA	2 cut(s)	324, 521
Hpy8I	GTNNAC	3 cut(s)	70, 115, 163
Hpy99I	CGWCG	2 cut(s)	50, 71
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	295, 488, 569
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 143, 218, 239, 276, 476, 485
HpyF3I	CTNAG	5 cut(s)	166, 384, 498, 519, 551
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	5 cut(s)	92, 231, 270, 277, 316
Kzo9I	GATC	4 cut(s)	103, 261, 362, 595
LmnI	GCTCC	3 cut(s)	241, 388, 436
Lsp1109I	GCAGC	4 cut(s)	199, 220, 307, 415
LweI	GCATC	3 cut(s)	18, 380, 445
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	546
MalI	GATC	4 cut(s)	105, 263, 364, 597
MboI	GATC	4 cut(s)	103, 261, 362, 595
MboII	GAAGA	8 cut(s)	268, 271, 317, 320, 406, 475, 536, 539
MflI	RGATCY	2 cut(s)	103, 261
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	319
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	124, 158, 185
MnlI	CCTC	9 cut(s)	129, 163, 190, 217, 379, 408, 445, 453, 528
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	170, 212
MspI	CCGG	2 cut(s)	77, 239
MspR9I	CCNGG	1 cut(s)	77
MvnI	CGCG	2 cut(s)	92, 270
MwoI	GCNNNNNNNGC	7 cut(s)	86, 143, 218, 239, 276, 476, 485
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	4 cut(s)	103, 261, 362, 595
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	2 cut(s)	81, 201
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	546
NotI	GCGGCCGC	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PkrI	GCNGC	9 cut(s)	88, 91, 214, 217, 220, 235, 269, 297, 430
PleI	GAGTC	3 cut(s)	124, 158, 185
PpsI	GAGTC	3 cut(s)	124, 158, 185
PpuMI	RGGWCCY	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	81, 201
PspPI	GGNCC	3 cut(s)	79, 199, 478
PspPPI	RGGWCCY	1 cut(s)	199
PsuI	RGATCY	2 cut(s)	103, 261
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SalI	GTCGAC	1 cut(s)	68
SatI	GCNGC	9 cut(s)	87, 90, 213, 216, 219, 234, 268, 296, 429
Sau3AI	GATC	4 cut(s)	103, 261, 362, 595
Sau96I	GGNCC	3 cut(s)	79, 199, 478
SchI	GAGTC	3 cut(s)	124, 158, 185
ScrFI	CCNGG	1 cut(s)	77
SfaNI	GCATC	3 cut(s)	18, 380, 445
SfcI	CTRYAG	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	324
SinI	GGWCC	1 cut(s)	199
SlaI	CTCGAG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	319
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	6 cut(s)	12, 48, 69, 325, 472, 594
TasI	AATT	1 cut(s)	319
TauI	GCSGC	5 cut(s)	89, 92, 218, 221, 270
TscAI	CASTG	2 cut(s)	307, 571
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	4 cut(s)	212, 233, 295, 428
Tsp45I	GTSAC	1 cut(s)	546
TspRI	CASTG	2 cut(s)	307, 571
VpaK11BI	GGWCC	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	324
XmiI	GTMKAC	2 cut(s)	69, 114
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.