Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8010874.1

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 533

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8010874.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 226 bp

atttggtactgtttctacatcgcatggatcagaagcatccaaaaagtctgaggagctgaagagaaaggctagagcagagaggtttgggattgctgctccacctgtggcaagtgatgaggatgcgaggaagaaagctcgactggcccgatttgcacctgtttctaagactgctaaacctgaccctcaggaagaagaaaaaaggaaggcaaggtcactcaggtatggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.27

Weight (kDa)

10.22

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	8
AluBI	AGCT	2 cut(s)	56, 135
AluI	AGCT	2 cut(s)	56, 135
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	143
AxyI	CCTNAGG	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	70
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	143
BmsI	GCATC	2 cut(s)	45, 110
Bse1I	ACTGG	1 cut(s)	145
Bse21I	CCTNAGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	36, 125
BseMII	CTCAG	2 cut(s)	40, 198
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	80
BshFI	GGCC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	2 cut(s)	41, 197
BspPI	GGATC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	145
BssMI	GATC	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	54
BstDEI	CTNAG	4 cut(s)	49, 163, 184, 216
BstF5I	GGATG	2 cut(s)	36, 125
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 150
BstV1I	GCAGC	1 cut(s)	80
Bsu36I	CCTNAGG	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	2 cut(s)	36, 125
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	24
CviJI	RGCY	4 cut(s)	56, 69, 135, 144
CviKI_1	RGCY	4 cut(s)	56, 69, 135, 144
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	4 cut(s)	49, 163, 184, 216
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	184
FaeI	CATG	1 cut(s)	27
FaiI	YATR	2 cut(s)	25, 223
FatI	CATG	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	2 cut(s)	23, 132
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	70
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	27
Hpy188I	TCNGA	2 cut(s)	32, 50
Hpy188III	TCNNGA	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 150
HpyF3I	CTNAG	4 cut(s)	49, 163, 184, 216
Hsp92II	CATG	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	53, 101
LpnPI	CCDG	6 cut(s)	115, 126, 169, 171, 190, 203
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	2 cut(s)	45, 110
MaeI	CTAG	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	4 cut(s)	71, 140, 201, 204
MnlI	CCTC	5 cut(s)	44, 73, 110, 118, 193
MwoI	GCNNNNNNNGC	2 cut(s)	141, 150
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	143
SetI	ASST	8 cut(s)	58, 84, 104, 137, 158, 179, 213, 222
SfaNI	GCATC	2 cut(s)	45, 110
SspMI	CTAG	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	211
XspI	CTAG	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.