Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Reverse (-)

9250240 .. 9253079

Gene Structure 2840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCACCACCGATACCCAGAAGCCCACCGACACCACCCCCGCCGTCGAAAACCCTCCCAAAGCCGCAGACCCCCCGGCCCCAGCCGTAGCGCCCAAACCAGATCTCCCCGTAGACCCTCCCACCGAGACTCCCGCCGCTCTCTCCGCCGTTGAATCCGCTGAAAACGGGTCCAAGGCTGACTCCGAGGACCCGAAGACCGCATCGGCAGCTGAGGATGGCGCTGCTCCGGCGTCTTCTGCTATTGAGAAGAAGATGCGCCGCGCCGAGCGGTTTGGAATATCTGTGCAGCTTACTGAAGAGGAGAAGCGCAATTCCCGAGCTGAAAGATTTGGTACTGTTCCTACATCGCATGGATCAGATGGATCCAAAAAGTCAGAGGAGTTGAAGAGAAAGGCTAGAGCAGAGAGGTTTGGTATTGCTGCTCCACCTGCGGCAAGTGATGAGGATGCGAGGAAGAAAGCCCGACAGGCCCGATTCGCACCTGTTTCTAAGACTGCTGCTAAACCTGACCCTCAGGAAGAAGAAAAAAGGAAGGCAAGGTCACTCAGGTTTTCAAATGGTTCTGCAGCATCTCTCTCTCAAGTGAATGCTAAGGGAAATATTGAGCCGGAAGCAGTTGCAGGCGAGGCTGTCGGAAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

22.46

Weight (kDa)

7.86

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho1_MOS11_C	PF18592	82 - 112	1.1e-11	Tho1/MOS11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	439
AccBSI	CCGCTC	2 cut(s)	140, 271
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	264
AclWI	GGATC	3 cut(s)	360, 364, 373
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	233
AfaI	GTAC	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	155, 388, 558
AluBI	AGCT	3 cut(s)	212, 292, 323
AluI	AGCT	3 cut(s)	212, 292, 323
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	3 cut(s)	360, 364, 373
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	3 cut(s)	3, 78, 471
ApeKI	GCWGC	6 cut(s)	209, 224, 289, 422, 500, 569
AspLEI	GCGC	5 cut(s)	94, 224, 261, 266, 312
AspS9I	GGNCC	4 cut(s)	79, 171, 190, 472
AsuC2I	CCSGG	1 cut(s)	77
AvaI	CYCGRG	1 cut(s)	318
AvaII	GGWCC	2 cut(s)	171, 190
AxyI	CCTNAGG	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	365
BbsI	GAAGAC	2 cut(s)	203, 228
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	6 cut(s)	211, 221, 301, 409, 487, 581
BccI	CCATC	2 cut(s)	212, 356
BceAI	ACGGC	3 cut(s)	29, 71, 134
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	567
BfoI	RGCGCY	2 cut(s)	95, 225
BfuAI	ACCTGC	1 cut(s)	439
BglI	GCCNNNNNGGC	1 cut(s)	470
BglII	AGATCT	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	171, 190
BmeT110I	CYCGRG	1 cut(s)	318
BmgT120I	GGNCC	4 cut(s)	79, 171, 190, 472
BmiI	GGNNCC	4 cut(s)	81, 172, 192, 367
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	4 cut(s)	212, 246, 439, 581
BpiI	GAAGAC	2 cut(s)	203, 228
Bpu10I	CCTNAGC	2 cut(s)	213, 594
BpuEI	CTTGAG	1 cut(s)	567
BpuMI	CCSGG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	75, 174, 186
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 115, 120, 145
Bse21I	CCTNAGG	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	75, 174, 186
BseGI	GGATG	2 cut(s)	223, 454
BseMII	CTCAG	3 cut(s)	204, 530, 562
BseRI	GAGGAG	2 cut(s)	317, 395
BseXI	GCAGC	6 cut(s)	211, 221, 301, 409, 487, 581
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	5, 80, 473
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	77, 230, 611
BsmAI	GTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	3 cut(s)	5, 80, 473
BsoBI	CYCGRG	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	103, 356, 365
BspANI	GGCC	3 cut(s)	5, 80, 473
BspCNI	CTCAG	3 cut(s)	205, 529, 561
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	4 cut(s)	81, 172, 192, 367
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	3 cut(s)	360, 364, 373
BsrBI	CCGCTC	2 cut(s)	140, 271
BssECI	CCNNGG	3 cut(s)	75, 174, 186
BssMI	GATC	3 cut(s)	103, 356, 365
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	2 cut(s)	294, 383
BstACI	GRCGYC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	625
BstDEI	CTNAG	5 cut(s)	213, 492, 516, 548, 594
BstF5I	GGATG	2 cut(s)	223, 454
BstFNI	CGCG	1 cut(s)	264
BstH2I	RGCGCY	2 cut(s)	95, 225
BstHHI	GCGC	5 cut(s)	94, 224, 261, 266, 312
BstKTI	GATC	3 cut(s)	106, 359, 368
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	3 cut(s)	103, 356, 365
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 209, 230, 239, 431, 470, 479, 629
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	6 cut(s)	211, 221, 301, 409, 487, 581
BstV2I	GAAGAC	2 cut(s)	203, 228
BstX2I	RGATCY	2 cut(s)	103, 365
BstYI	RGATCY	2 cut(s)	103, 365
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	3 cut(s)	5, 80, 473
BtgZI	GCGATG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	223, 454
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	625
CfoI	GCGC	5 cut(s)	94, 224, 261, 266, 312
Cfr13I	GGNCC	4 cut(s)	79, 171, 190, 472
CseI	GACGC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	2 cut(s)	353, 645
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	5 cut(s)	213, 492, 516, 548, 594
DpnI	GATC	3 cut(s)	105, 358, 367
DpnII	GATC	3 cut(s)	103, 356, 365
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	294, 383
EarI	CTCTTC	2 cut(s)	294, 383
EciI	GGCGGA	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	171, 190
Eco57I	CTGAAG	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	356, 648
FaiI	YATR	2 cut(s)	354, 646
FatI	CATG	2 cut(s)	352, 644
FauI	CCCGC	2 cut(s)	49, 142
FblI	GTMKAC	1 cut(s)	114
FokI	GGATG	2 cut(s)	230, 461
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	5 cut(s)	93, 223, 260, 265, 311
GsaI	CCCAGC	1 cut(s)	86
HaeII	RGCGCY	2 cut(s)	95, 225
HaeIII	GGCC	3 cut(s)	5, 80, 473
HapII	CCGG	3 cut(s)	77, 230, 611
HgaI	GACGC	1 cut(s)	222
HhaI	GCGC	5 cut(s)	94, 224, 261, 266, 312
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	356, 648
Hin6I	GCGC	5 cut(s)	92, 222, 259, 264, 310
HinP1I	GCGC	5 cut(s)	92, 222, 259, 264, 310
HinfI	GANTC	4 cut(s)	130, 155, 182, 477
HpaII	CCGG	3 cut(s)	77, 230, 611
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	4 cut(s)	187, 361, 379, 638
Hpy188III	TCNNGA	2 cut(s)	318, 518
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	289, 569, 623
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 209, 230, 239, 431, 470, 479, 629
HpyF3I	CTNAG	5 cut(s)	213, 492, 516, 548, 594
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	356, 648
HspAI	GCGC	5 cut(s)	92, 222, 259, 264, 310
Kzo9I	GATC	3 cut(s)	103, 356, 365
LmnI	GCTCC	2 cut(s)	232, 430
Lsp1109I	GCAGC	6 cut(s)	211, 221, 301, 409, 487, 581
LweI	GCATC	4 cut(s)	212, 246, 439, 581
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	3 cut(s)	105, 358, 367
MbiI	CCGCTC	2 cut(s)	140, 271
MboI	GATC	3 cut(s)	103, 356, 365
MboII	GAAGA	9 cut(s)	208, 228, 262, 265, 311, 400, 469, 533, 536
MflI	RGATCY	2 cut(s)	103, 365
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	313
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	124, 176
MmeI	TCCRAC	1 cut(s)	616
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	161, 212
MspI	CCGG	3 cut(s)	77, 230, 611
MspR9I	CCNGG	1 cut(s)	77
MteI	GCGCNGCGC	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	595
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	8 cut(s)	146, 209, 230, 239, 431, 470, 479, 629
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	3 cut(s)	103, 356, 365
NlaIII	CATG	2 cut(s)	356, 648
NlaIV	GGNNCC	4 cut(s)	81, 172, 192, 367
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	543
PaqCI	CACCTGC	1 cut(s)	439
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	2 cut(s)	155, 477
PleI	GAGTC	2 cut(s)	124, 176
PpsI	GAGTC	2 cut(s)	124, 176
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	82
PspN4I	GGNNCC	4 cut(s)	81, 172, 192, 367
PspPI	GGNCC	4 cut(s)	79, 171, 190, 472
PspPPI	RGGWCCY	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	2 cut(s)	103, 365
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	103, 356, 365
Sau96I	GGNCC	4 cut(s)	79, 171, 190, 472
SchI	GAGTC	2 cut(s)	124, 176
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	9 cut(s)	214, 294, 325, 413, 433, 487, 511, 545, 554
SfaNI	GCATC	4 cut(s)	212, 246, 439, 581
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	2 cut(s)	171, 190
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	1 cut(s)	313
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	313
TauI	GCSGC	4 cut(s)	68, 140, 264, 437
TfiI	GAWTC	2 cut(s)	155, 477
TseFI	GTSAC	1 cut(s)	543
TseI	GCWGC	6 cut(s)	209, 224, 289, 422, 500, 569
Tsp45I	GTSAC	1 cut(s)	543
VpaK11BI	GGWCC	2 cut(s)	171, 190
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.