Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Forward (+)

15045647 .. 15047818

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12580.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCCGTTATGCAAGGGCAAAATATCTTCCCAAAAAAAAATAGAGGCCAAATATCCCCCAAAAAATGTCACACGTTTCTTGTTTGCACATTCACTATTCGACTCTTCGCATTCACAACCTAACCTACACACCCAAACACCTCTCTCTCTCTCTCTCTCTAACCTTCTTTGCCGCACTTCTTACGAAGTCTCCGATTCCAATTCCCCGACCTCCATTTCTCCAATGGCCACCGACACACAGAAGCCCAGCGACCCCATCACCGCCTTAGAAGCCCCTAAGAAAACCCTAGAATCCTCCCCGGCCCCACCCACCGCCACAATTCCGGATCGACCCGATAACCCGTCCGCTGACACTCCCTCTGATCCACCTCCGTCGTCCGAGGTTGCCTCCAAAGAAAACGGGTCCAAGGCTGACTCTGAGGATCCCAAGACTGACTCTGCCACCGGTGACGCGGCTGCTCCGGCTACCGCCATTGAGAAGAAGATGCGCCGTGCCGAGCGGTTTGGGATATCCGTGCAGCTCACAGAAAAAGAGAAGCGCAACTCTCGCGCTGAGAGGTTTGGTACTGTTTCTACATCACACGGATCCGAAGCATCTAAGAAATCAGAGGACTTGAAGAGGAAGGCTAGAGCAGAGAGGTTTGGGCTTCCTGGCCCTGCTGTGGTGGGTGATGAGGATGCAAAGAAGAAGGCTCGTCTTGCTCGGTTTGCTCCTAATGCCAAACCAGATGCTAAAACTGATCCTCAGGAAGAAGAAAAAAGAAAGGCGAGGGCTCTCAGGTTTTCAAACACCTCAAAAGGTTCTCTTACTCAAGTGAATGATAAGGGTAATGTTGAGCAGGCAGCGCTGGTGGAGAGGTTTGAAGAGAAGCTTCATTTCTTAGTAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

32.11

Weight (kDa)

9.24

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	499
AccII	CGCG	2 cut(s)	452, 549
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	7 cut(s)	172, 261, 312, 345, 452, 468, 499
AclWI	GGATC	7 cut(s)	333, 356, 416, 429, 579, 592, 734
AcoI	YGGCCR	1 cut(s)	225
AfaI	GTAC	1 cut(s)	565
AfeI	AGCGCT	1 cut(s)	846
AfiI	CCNNNNNNNGG	1 cut(s)	661
AflIII	ACRYGT	1 cut(s)	71
AgeI	ACCGGT	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	616, 786, 863
AjnI	CCWGG	1 cut(s)	649
AluBI	AGCT	2 cut(s)	520, 871
AluI	AGCT	2 cut(s)	520, 871
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	7 cut(s)	333, 356, 416, 429, 579, 592, 734
Aor13HI	TCCGGA	1 cut(s)	322
Aor51HI	AGCGCT	1 cut(s)	846
AoxI	GGCC	4 cut(s)	45, 225, 300, 652
ApeKI	GCWGC	3 cut(s)	455, 517, 842
AsiGI	ACCGGT	1 cut(s)	443
AspLEI	GCGC	4 cut(s)	489, 540, 551, 847
AspS9I	GGNCC	3 cut(s)	301, 402, 653
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	250, 458, 680
AvaII	GGWCC	1 cut(s)	402
AxyI	CCTNAGG	1 cut(s)	744
BalI	TGGCCA	1 cut(s)	227
BamHI	GGATCC	2 cut(s)	421, 584
BanII	GRGCYC	1 cut(s)	775
BbvI	GCAGC	3 cut(s)	442, 529, 854
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	287, 627
BfoI	RGCGCY	1 cut(s)	848
BisI	GCNGC	5 cut(s)	172, 453, 456, 518, 843
BlsI	GCNGC	5 cut(s)	173, 454, 457, 519, 844
Bme1390I	CCNGG	2 cut(s)	299, 651
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	3 cut(s)	301, 402, 653
BmiI	GGNNCC	4 cut(s)	303, 403, 423, 586
BmrFI	CCNGG	2 cut(s)	299, 651
BmsI	GCATC	4 cut(s)	474, 602, 667, 718
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpuEI	CTTGAG	1 cut(s)	795
BpuMI	CCSGG	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	297, 378, 405
BsaWI	WCCGGW	2 cut(s)	322, 443
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse118I	RCCGGY	1 cut(s)	443
Bse21I	CCTNAGG	1 cut(s)	744
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	3 cut(s)	297, 378, 405
BseGI	GGATG	1 cut(s)	682
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMII	CTCAG	4 cut(s)	408, 543, 758, 790
BseXI	GCAGC	3 cut(s)	442, 529, 854
BseYI	CCCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	536
Bsh1236I	CGCG	2 cut(s)	452, 549
BshFI	GGCC	4 cut(s)	47, 227, 302, 654
BshTI	ACCGGT	1 cut(s)	443
BsiSI	CCGG	4 cut(s)	299, 323, 444, 461
BslI	CCNNNNNNNGG	1 cut(s)	661
BsmAI	GTCTC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	4 cut(s)	47, 227, 302, 654
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	325, 361, 421, 584, 739
BspACI	CCGC	7 cut(s)	172, 261, 312, 345, 452, 468, 499
BspANI	GGCC	4 cut(s)	47, 227, 302, 654
BspCNI	CTCAG	4 cut(s)	409, 544, 757, 789
BspEI	TCCGGA	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	452, 549
BspLI	GGNNCC	4 cut(s)	303, 403, 423, 586
BspPI	GGATC	7 cut(s)	333, 356, 416, 429, 579, 592, 734
BsrBI	CCGCTC	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	443
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	3 cut(s)	297, 378, 405
BssMI	GATC	5 cut(s)	325, 361, 421, 584, 739
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	3 cut(s)	109, 611, 858
BstC8I	GCNNGC	1 cut(s)	840
BstDEI	CTNAG	8 cut(s)	265, 276, 417, 552, 597, 744, 776, 880
BstF5I	GGATG	1 cut(s)	682
BstFNI	CGCG	2 cut(s)	452, 549
BstH2I	RGCGCY	1 cut(s)	848
BstHHI	GCGC	4 cut(s)	489, 540, 551, 847
BstKTI	GATC	5 cut(s)	328, 364, 424, 587, 742
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	5 cut(s)	325, 361, 421, 584, 739
BstMWI	GCNNNNNNNGC	7 cut(s)	269, 461, 546, 698, 707, 716, 844
BstNI	CCWGG	1 cut(s)	651
BstSCI	CCNGG	2 cut(s)	297, 649
BstUI	CGCG	2 cut(s)	452, 549
BstV1I	GCAGC	3 cut(s)	442, 529, 854
BstX2I	RGATCY	2 cut(s)	421, 584
BstYI	RGATCY	2 cut(s)	421, 584
Bsu36I	CCTNAGG	1 cut(s)	744
BsuRI	GGCC	4 cut(s)	47, 227, 302, 654
BtsCI	GGATG	1 cut(s)	682
Cac8I	GCNNGC	1 cut(s)	840
CfoI	GCGC	4 cut(s)	489, 540, 551, 847
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	3 cut(s)	301, 402, 653
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	564
CspAI	ACCGGT	1 cut(s)	443
CviQI	GTAC	1 cut(s)	564
DdeI	CTNAG	8 cut(s)	265, 276, 417, 552, 597, 744, 776, 880
DpnI	GATC	5 cut(s)	327, 363, 423, 586, 741
DpnII	GATC	5 cut(s)	325, 361, 421, 584, 739
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	109, 611, 858
EarI	CTCTTC	3 cut(s)	109, 611, 858
Eco130I	CCWWGG	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	775
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	402
Eco47III	AGCGCT	1 cut(s)	846
Eco81I	CCTNAGG	1 cut(s)	744
EcoRII	CCWGG	1 cut(s)	649
EcoRV	GATATC	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	775
ErhI	CCWWGG	1 cut(s)	405
FaiI	YATR	2 cut(s)	10, 889
FalI	AAGNNNNNCTT	4 cut(s)	789, 821, 855, 887
Fnu4HI	GCNGC	5 cut(s)	172, 453, 456, 518, 843
FokI	GGATG	1 cut(s)	689
FriOI	GRGCYC	1 cut(s)	775
Fsp4HI	GCNGC	5 cut(s)	172, 453, 456, 518, 843
FspBI	CTAG	2 cut(s)	287, 627
GlaI	GCGC	4 cut(s)	488, 539, 550, 846
GluI	GCNGC	5 cut(s)	172, 453, 456, 518, 843
GsaI	CCCAGC	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	848
HaeIII	GGCC	4 cut(s)	47, 227, 302, 654
HapII	CCGG	4 cut(s)	299, 323, 444, 461
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	4 cut(s)	489, 540, 551, 847
Hin6I	GCGC	4 cut(s)	487, 538, 549, 845
HinP1I	GCGC	4 cut(s)	487, 538, 549, 845
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	5 cut(s)	101, 194, 290, 413, 434
HpaII	CCGG	4 cut(s)	299, 323, 444, 461
HphI	GGTGA	3 cut(s)	250, 458, 680
Hpy188I	TCNGA	6 cut(s)	193, 361, 379, 418, 589, 607
Hpy188III	TCNNGA	2 cut(s)	323, 746
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	3 cut(s)	173, 616, 682
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	4 cut(s)	12, 86, 517, 680
HpyF10VI	GCNNNNNNNGC	7 cut(s)	269, 461, 546, 698, 707, 716, 844
HpyF3I	CTNAG	8 cut(s)	265, 276, 417, 552, 597, 744, 776, 880
HpySE526I	ACGT	1 cut(s)	73
HspAI	GCGC	4 cut(s)	487, 538, 549, 845
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	325, 361, 421, 584, 739
LmnI	GCTCC	2 cut(s)	463, 715
Lsp1109I	GCAGC	3 cut(s)	442, 529, 854
LweI	GCATC	4 cut(s)	474, 602, 667, 718
MaeI	CTAG	2 cut(s)	287, 627
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	2 cut(s)	67, 446
MalI	GATC	5 cut(s)	327, 363, 423, 586, 741
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	5 cut(s)	325, 361, 421, 584, 739
MboII	GAAGA	9 cut(s)	18, 96, 490, 493, 628, 697, 761, 764, 875
MflI	RGATCY	2 cut(s)	421, 584
MhlI	GDGCHC	1 cut(s)	775
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	2 cut(s)	199, 318
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	3 cut(s)	95, 407, 428
Mox20I	TGGCCA	1 cut(s)	227
MroI	TCCGGA	1 cut(s)	322
MscI	TGGCCA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	4 cut(s)	299, 323, 444, 461
MspR9I	CCNGG	2 cut(s)	299, 651
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	651
MvnI	CGCG	2 cut(s)	452, 549
MwoI	GCNNNNNNNGC	7 cut(s)	269, 461, 546, 698, 707, 716, 844
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	5 cut(s)	325, 361, 421, 584, 739
NlaIV	GGNNCC	4 cut(s)	303, 403, 423, 586
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	67, 446
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	194, 290
PinAI	ACCGGT	1 cut(s)	443
PkrI	GCNGC	5 cut(s)	173, 454, 457, 519, 844
PleI	GAGTC	3 cut(s)	95, 407, 428
PpsI	GAGTC	3 cut(s)	95, 407, 428
Psp6I	CCWGG	1 cut(s)	649
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	649
PspN4I	GGNNCC	4 cut(s)	303, 403, 423, 586
PspPI	GGNCC	3 cut(s)	301, 402, 653
PsuI	RGATCY	2 cut(s)	421, 584
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
SatI	GCNGC	5 cut(s)	172, 453, 456, 518, 843
Sau3AI	GATC	5 cut(s)	325, 361, 421, 584, 739
Sau96I	GGNCC	3 cut(s)	301, 402, 653
SchI	GAGTC	3 cut(s)	95, 407, 428
ScrFI	CCNGG	2 cut(s)	299, 651
SduI	GDGCHC	1 cut(s)	775
SfaNI	GCATC	4 cut(s)	474, 602, 667, 718
SgrAI	CRCCGGYG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	810
SmoI	CTYRAG	1 cut(s)	810
Sse9I	AATT	2 cut(s)	199, 318
SsiI	CCGC	7 cut(s)	172, 261, 312, 345, 452, 468, 499
SspMI	CTAG	2 cut(s)	287, 627
StyD4I	CCNGG	2 cut(s)	297, 649
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	99, 328
TasI	AATT	2 cut(s)	199, 318
TauI	GCSGC	2 cut(s)	174, 455
TfiI	GAWTC	2 cut(s)	194, 290
TseFI	GTSAC	2 cut(s)	67, 446
TseI	GCWGC	3 cut(s)	455, 517, 842
Tsp45I	GTSAC	2 cut(s)	67, 446
TspDTI	ATGAA	1 cut(s)	863
TspGWI	ACGGA	3 cut(s)	360, 502, 597
VpaK11BI	GGWCC	1 cut(s)	402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	2 cut(s)	287, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.