Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009618

Physical Location & Seq

Genomic Coordinates Forward (+)

24234540 .. 24237612

Gene Structure 3073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G244900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCCACCGAAACGCAGAAGCTCAGCGACACCAACCCCGCCCTAGAGAACCCTAAGAAAACCCTAGACCCTTCCCCCATCCCACCCACCGCCACCAACCCAGATCGACCCGAAGACCCGCCTACTGACACTCCCTCCGATCCGGCTCCGTCGTCCGAGGTTGTGTCCGAAGAGAACGGTTCCAAAGCGGACTCTGAGGATCCGAAGACCGCTGCAGGCTCTGAAGCCGGTGATGGCGCTGCCCCTGCTAACTCTATTCAGAAGAAGATGCGCCGAGCCGAGCGGTTCGGGATATCTGTGCAGATGACTGAAGAAGAGAAGCGCAACTCTCGGGCTGAGAGGTTTGGCACTGTTTCCACATCTCATGGATCAGAAGCATCTAAAAAATCAGAGGAGCAGAAGAGAAAGGCTAGAGCAGAGAGGTTTGGGCTTTCTGGTCCAGCTGTGGCGGGTGATGAGAATGCAAAGAAGAAGGCTCGTCTTGCTCGATTTGCACCTATTTCCAAAACCGATACTAAAACTGATCCCATGGAAGAAGAAAAAAGGAAGGCAAGGGCACTCAGGTTTTCAAAGGCCTCAACAGGTTCTCTTTCTCAAGTGAATGACAAGGGAAATATCGAGCCGAAGGCAGCCATAGCTGGCAGTGCTGGCGGAGGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0031503 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

23.27

Weight (kDa)

8.69

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02770
fragaria_vesca	FvH4_6g14930
malus_domestica	MD04G1111200.v1.1 MD12G1129600.v1.1
prunus_persica	Prupe.6G244900_v2.0.a1 Prupe.6G244900_v2.0.a1
pyrus_communis	pycom04g10360 pycom12g12580
rosa_chinensis	RchiOBHm_Chr3g0468131
rosa_laevigata	RLG00000024446
rosa_multiflora	Rmu_co8010874.1_g000001 Rmu_sc0003659.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413000
rosa_rugosa	Rorug03G0093300 Rorug03G0093400 Rorug03G0093400 Rorug03G0093500
rosa_samantha	Rh3AG141400 Rh3BG162900 Rh3CG162800 Rh3DG163400
rosa_wichuraiana	Rw3G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	283
AciI	CCGC	8 cut(s)	39, 90, 119, 188, 210, 283, 449, 651
AclWI	GGATC	5 cut(s)	134, 194, 207, 376, 518
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	243, 330
AgsI	TTSAA	1 cut(s)	570
AluBI	AGCT	3 cut(s)	22, 443, 638
AluI	AGCT	3 cut(s)	22, 443, 638
AlwI	GGATC	5 cut(s)	134, 194, 207, 376, 518
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	2 cut(s)	3, 573
ApeKI	GCWGC	3 cut(s)	212, 239, 629
AspLEI	GCGC	3 cut(s)	239, 273, 324
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	242, 464
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	559
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	199
BbsI	GAAGAC	2 cut(s)	120, 212
BbvI	GCAGC	3 cut(s)	199, 226, 641
BccI	CCATC	2 cut(s)	86, 227
BfaI	CTAG	3 cut(s)	44, 65, 411
BfmI	CTRYAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	3 cut(s)	213, 240, 630
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	3 cut(s)	214, 241, 631
Bme18I	GGWCC	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	3 cut(s)	147, 181, 201
BmsI	GCATC	2 cut(s)	258, 386
BpiI	GAAGAC	2 cut(s)	120, 212
Bpu1102I	GCTNAGC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	156, 528
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 119, 145, 149
Bse118I	RCCGGY	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	156, 528
BseGI	GGATG	1 cut(s)	78
BseMII	CTCAG	4 cut(s)	37, 186, 327, 574
BseRI	GAGGAG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	3 cut(s)	199, 226, 641
BsgI	GTGCAG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	5, 575
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	143, 228
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	5, 575
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	5 cut(s)	103, 139, 199, 368, 523
Bsp1720I	GCTNAGC	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	8 cut(s)	39, 90, 119, 188, 210, 283, 449, 651
BspANI	GGCC	2 cut(s)	5, 575
BspCNI	CTCAG	4 cut(s)	36, 187, 328, 573
BspLI	GGNNCC	3 cut(s)	147, 181, 201
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	5 cut(s)	134, 194, 207, 376, 518
BsrBI	CCGCTC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	156, 528
BssMI	GATC	5 cut(s)	103, 139, 199, 368, 523
BssT1I	CCWWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	179, 352
Bst6I	CTCTTC	3 cut(s)	165, 309, 395
BstC8I	GCNNGC	3 cut(s)	217, 640, 649
BstDEI	CTNAG	5 cut(s)	23, 54, 195, 336, 560
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	3 cut(s)	239, 273, 324
BstKTI	GATC	5 cut(s)	106, 142, 202, 371, 526
BstMBI	GATC	5 cut(s)	103, 139, 199, 368, 523
BstMWI	GCNNNNNNNGC	6 cut(s)	245, 482, 491, 635, 644, 648
BstSFI	CTRYAG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	3 cut(s)	199, 226, 641
BstV2I	GAAGAC	2 cut(s)	120, 212
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	5, 575
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	2 cut(s)	348, 649
Cac8I	GCNNGC	3 cut(s)	217, 640, 649
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	3 cut(s)	239, 273, 324
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	437
CviAII	CATG	2 cut(s)	365, 529
DdeI	CTNAG	5 cut(s)	23, 54, 195, 336, 560
DpnI	GATC	5 cut(s)	105, 141, 201, 370, 525
DpnII	GATC	5 cut(s)	103, 139, 199, 368, 523
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	165, 309, 395
EarI	CTCTTC	3 cut(s)	165, 309, 395
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	575
Eco32I	GATATC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	2 cut(s)	243, 330
Eco88I	CYCGRG	1 cut(s)	330
EcoRV	GATATC	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	2 cut(s)	368, 532
FaiI	YATR	3 cut(s)	366, 530, 635
FatI	CATG	2 cut(s)	364, 528
FauI	CCCGC	3 cut(s)	46, 126, 442
Fnu4HI	GCNGC	3 cut(s)	213, 240, 630
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	213, 240, 630
FspBI	CTAG	3 cut(s)	44, 65, 411
GlaI	GCGC	3 cut(s)	238, 272, 323
GluI	GCNGC	3 cut(s)	213, 240, 630
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	5, 575
HapII	CCGG	2 cut(s)	143, 228
HhaI	GCGC	3 cut(s)	239, 273, 324
Hin1II	CATG	2 cut(s)	368, 532
Hin6I	GCGC	3 cut(s)	237, 271, 322
HinP1I	GCGC	3 cut(s)	237, 271, 322
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	2 cut(s)	143, 228
HphI	GGTGA	2 cut(s)	242, 464
Hpy188I	TCNGA	9 cut(s)	139, 157, 169, 196, 204, 223, 261, 373, 391
Hpy188III	TCNNGA	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	4 cut(s)	81, 466, 541, 619
HpyCH4III	ACNGT	2 cut(s)	179, 352
HpyCH4V	TGCA	4 cut(s)	215, 301, 464, 494
HpyF10VI	GCNNNNNNNGC	6 cut(s)	245, 482, 491, 635, 644, 648
HpyF3I	CTNAG	5 cut(s)	23, 54, 195, 336, 560
Hsp92II	CATG	2 cut(s)	368, 532
HspAI	GCGC	3 cut(s)	237, 271, 322
Kzo9I	GATC	5 cut(s)	103, 139, 199, 368, 523
LmnI	GCTCC	2 cut(s)	151, 394
Lsp1109I	GCAGC	3 cut(s)	199, 226, 641
LweI	GCATC	2 cut(s)	258, 386
MaeI	CTAG	3 cut(s)	44, 65, 411
MalI	GATC	5 cut(s)	105, 141, 201, 370, 525
MbiI	CCGCTC	1 cut(s)	283
MboI	GATC	5 cut(s)	103, 139, 199, 368, 523
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	8 cut(s)	145, 151, 190, 333, 385, 414, 586, 647
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	212, 443
MspI	CCGG	2 cut(s)	143, 228
Mva1269I	GAATGC	1 cut(s)	466
MwoI	GCNNNNNNNGC	6 cut(s)	245, 482, 491, 635, 644, 648
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	5 cut(s)	103, 139, 199, 368, 523
NlaIII	CATG	2 cut(s)	368, 532
NlaIV	GGNNCC	3 cut(s)	147, 181, 201
NmeAIII	GCCGAG	2 cut(s)	299, 304
PceI	AGGCCT	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	484
PctI	GAATGC	1 cut(s)	466
PkrI	GCNGC	3 cut(s)	214, 241, 631
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PspN4I	GGNNCC	3 cut(s)	147, 181, 201
PspPI	GGNCC	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	443
SatI	GCNGC	3 cut(s)	213, 240, 630
Sau3AI	GATC	5 cut(s)	103, 139, 199, 368, 523
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	559
SetI	ASST	9 cut(s)	24, 162, 344, 425, 445, 499, 566, 586, 640
SfaNI	GCATC	2 cut(s)	258, 386
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
SseBI	AGGCCT	1 cut(s)	575
SsiI	CCGC	8 cut(s)	39, 90, 119, 188, 210, 283, 449, 651
SspMI	CTAG	3 cut(s)	44, 65, 411
StuI	AGGCCT	1 cut(s)	575
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	179, 352
TaqI	TCGA	3 cut(s)	106, 487, 618
TscAI	CASTG	2 cut(s)	355, 649
TseI	GCWGC	3 cut(s)	212, 239, 629
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	2 cut(s)	355, 649
VpaK11BI	GGWCC	1 cut(s)	437
XspI	CTAG	3 cut(s)	44, 65, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.