Rorug03G0093400

Protein MODIFIER OF SNC1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
7307076 .. 7309162
2087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0093400.1

Sequence Viewer

Length: 1242 bp
ATGGAAAGAATGAGTTGTAGTACTCTGCGAGATCTGGGCTGTGGAGGAAGCTTCTCCTTCAGCTGCTCCGACTCCGACTTAAACTTCTCCTCTGCCCTCTCCCATTTCACCGACGACGTCGGTGATGATGTTGTTGAAGAAGACGATGATAGTGACGTCGACGATGAAGAATCATACATCGAAATAGCACTGGATCAACACCATCCAAAAGCAAGCCATGATGATGGTGATGGAGACCGGTTAGACCATGTCAATTACTTGCGCATATCGTTTTCGTCAAGCTTTCCCTTCCCAGACTTCTCCAACCACACCACCAACCCTAATACTCAAGACGACACGAACATCGTCTCCGAGACGACAACTGACCCAGCTGGAGCAGTAAAGCAGGCAGCATCATCTTCATCAATGAAGTCAATATCAGCTTCGTCCACCTCAATGGAAGACTTTAGAGGCTCTGATCATGATGTTAGAACCAAAAGGTCGAAATTGCCGGCAGTCAACCGCCTAGTCAATACGTTGTTCTTTAGTCTTTGGTCATCGTCGGACACCACCGCCAAGAAAGTTAGTGGTGCTCAGGACCATTATAATATTAGTCATCCCCAATTGCACGTGGACAACGATGACTTCGTACAGAACAGGAAAGTATCAAACATAAAAACCACAGTCAATGGCGGCATCATGAAGTTGCTTTTCAAGTTTCGAGCTATGAATCTTGGAACTTTGGTAGCTTCATTTGTGAAACCCCGAAAAGTTGTTTGTCCTCCTGATCAAGAGTACTGCCATTTTAGTAACGAAGTACGCAAGAACAAGAAATCAAAAGCTCAGTCGACTCTTCAGAATCAGAAGCCCTTAGACAAATTCTTCGTACAAAAGAAGCAGCAGGGAAAGCGTGTCAAGATGGACTCTTCACGAGAGGTAGGAGGCGGTGAGAAATCAAGAGCGTTGGAGAAAAACTTGAACGCAGTTAGAGGGGTTTTAGAAGCTATAGGAAGTAGTATGAGCACAGGCGTTAACCGCAAAGAAAGAAGAACGAGGAGCTGCCCAAGTTCTATCAAGTCCTCTCCAATTCATAAAGAATTTGCAGGTGATCAGAGTAAAGTATTTGCAAGAGAAACCTCAATTCAAGCTGCAATTGCCCACTGTTTCCTAGCCCCAGAGACTAATCCGTGCTCGGGGGATCTTGTCAAAACGCTTCCTCCCTCCTGGCCACCAAGAATACCTATGGGAGCTTTCCTCATTTAG

Protein Analysis

413

Amino Acids

45.54

Weight (kDa)

6.68

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AarI CACCTGC 1 cut(s) 1073
AatII GACGTC 2 cut(s) 120, 159
Acc16I TGCGCA 1 cut(s) 263
Acc36I ACCTGC 1 cut(s) 1073
AccI GTMKAC 2 cut(s) 159, 827
AciI CCGC 5 cut(s) 502, 552, 672, 924, 1015
AclWI GGATC 2 cut(s) 201, 1185
AcoI YGGCCR 1 cut(s) 1205
AcsI RAATTY 2 cut(s) 857, 1076
AcuI CTGAAG 2 cut(s) 43, 818
AcvI CACGTG 1 cut(s) 610
AcyI GRCGYC 2 cut(s) 117, 156
AfaI GTAC 5 cut(s) 22, 630, 776, 798, 867
AfiI CCNNNNNNNGG 1 cut(s) 1172
AgeI ACCGGT 1 cut(s) 237
AgsI TTSAA 4 cut(s) 137, 694, 958, 1124
AjnI CCWGG 1 cut(s) 1202
AloI GAACNNNNNNTCC 2 cut(s) 332, 364
Alw21I GWGCWC 3 cut(s) 574, 1004, 1172
Alw26I GTCTC 4 cut(s) 228, 347, 352, 1151
AlwI GGATC 2 cut(s) 201, 1185
Ama87I CYCGRG 1 cut(s) 1171
AoxI GGCC 1 cut(s) 1205
ApeKI GCWGC 5 cut(s) 63, 389, 877, 1038, 1127
ApoI RAATTY 2 cut(s) 857, 1076
ArsI GACNNNNNNTTYG 4 cut(s) 809, 841, 845, 877
AsiGI ACCGGT 1 cut(s) 237
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 577
AsuHPI GGTGA 5 cut(s) 100, 134, 239, 938, 1097
AvaI CYCGRG 1 cut(s) 1171
AvaII GGWCC 1 cut(s) 577
BalI TGGCCA 1 cut(s) 1207
BauI CACGAG 1 cut(s) 909
BbrPI CACGTG 1 cut(s) 610
BbsI GAAGAC 2 cut(s) 147, 447
Bbv12I GWGCWC 3 cut(s) 574, 1004, 1172
BbvI GCAGC 5 cut(s) 50, 401, 889, 1025, 1114
BccI CCATC 4 cut(s) 210, 218, 224, 892
BciT130I CCWGG 1 cut(s) 1204
BclI TGATCA 3 cut(s) 457, 766, 1087
BcoDI GTCTC 4 cut(s) 228, 347, 352, 1151
BfaI CTAG 2 cut(s) 506, 1148
BfmI CTRYAG 1 cut(s) 984
BfuAI ACCTGC 1 cut(s) 1073
BglII AGATCT 1 cut(s) 31
BisI GCNGC 6 cut(s) 64, 390, 673, 878, 1039, 1128
BlsI GCNGC 6 cut(s) 65, 391, 674, 879, 1040, 1129
BmcAI AGTACT 2 cut(s) 22, 776
Bme1390I CCNGG 1 cut(s) 1204
Bme18I GGWCC 1 cut(s) 577
BmeT110I CYCGRG 1 cut(s) 1171
BmgT120I GGNCC 1 cut(s) 577
BmrFI CCNGG 1 cut(s) 1204
BmsI GCATC 2 cut(s) 401, 684
BpiI GAAGAC 2 cut(s) 147, 447
BplI GAGNNNNNCTC 1 cut(s) 1218
BpmI CTGGAG 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 610
BsaHI GRCGYC 2 cut(s) 117, 156
BsaI GGTCTC 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 4 cut(s) 332, 362, 1180, 1210
Bsc4I CCNNNNNNNGG 1 cut(s) 1172
Bse118I RCCGGY 2 cut(s) 237, 490
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 1204
BseGI GGATG 2 cut(s) 202, 595
BseLI CCNNNNNNNGG 1 cut(s) 1172
BseMII CTCAG 2 cut(s) 587, 836
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 2 cut(s) 79, 1048
BseXI GCAGC 5 cut(s) 50, 401, 889, 1025, 1114
BseYI CCCAGC 1 cut(s) 367
BshFI GGCC 1 cut(s) 1207
BshTI ACCGGT 1 cut(s) 237
BsiHKAI GWGCWC 3 cut(s) 574, 1004, 1172
BsiHKCI CYCGRG 1 cut(s) 1171
BsiSI CCGG 2 cut(s) 238, 491
BslI CCNNNNNNNGG 1 cut(s) 1172
BsmAI GTCTC 4 cut(s) 228, 347, 352, 1151
BsmBI CGTCTC 2 cut(s) 347, 352
BsnI GGCC 1 cut(s) 1207
Bso31I GGTCTC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 1171
Bsp1286I GDGCHC 3 cut(s) 574, 1004, 1172
Bsp143I GATC 6 cut(s) 31, 193, 457, 766, 1087, 1177
BspACI CCGC 5 cut(s) 502, 552, 672, 924, 1015
BspANI GGCC 1 cut(s) 1207
BspCNI CTCAG 2 cut(s) 586, 835
BspHI TCATGA 2 cut(s) 460, 678
BspMI ACCTGC 1 cut(s) 1073
BspPI GGATC 2 cut(s) 201, 1185
BspTNI GGTCTC 1 cut(s) 228
BsrFI RCCGGY 2 cut(s) 237, 490
BsrI ACTGG 1 cut(s) 195
BssAI RCCGGY 2 cut(s) 237, 490
BssMI GATC 6 cut(s) 31, 193, 457, 766, 1087, 1177
BssNI GRCGYC 2 cut(s) 117, 156
BssSI CACGAG 1 cut(s) 909
Bst2BI CACGAG 1 cut(s) 909
Bst2UI CCWGG 1 cut(s) 1204
Bst4CI ACNGT 2 cut(s) 664, 1142
Bst6I CTCTTC 2 cut(s) 837, 910
BstACI GRCGYC 2 cut(s) 117, 156
BstBAI YACGTR 1 cut(s) 610
BstC8I GCNNGC 3 cut(s) 214, 387, 492
BstDEI CTNAG 3 cut(s) 573, 822, 850
BstF5I GGATG 2 cut(s) 202, 595
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 6 cut(s) 34, 196, 460, 769, 1090, 1180
BstMAI GTCTC 4 cut(s) 228, 347, 352, 1151
BstMBI GATC 6 cut(s) 31, 193, 457, 766, 1087, 1177
BstMWI GCNNNNNNNGC 3 cut(s) 886, 1014, 1133
BstNI CCWGG 1 cut(s) 1204
BstSCI CCNGG 1 cut(s) 1202
BstSFI CTRYAG 1 cut(s) 984
BstV1I GCAGC 5 cut(s) 50, 401, 889, 1025, 1114
BstV2I GAAGAC 2 cut(s) 147, 447
BstX2I RGATCY 2 cut(s) 31, 1177
BstXI CCANNNNNNTGG 2 cut(s) 224, 436
BstYI RGATCY 2 cut(s) 31, 1177
BsuRI GGCC 1 cut(s) 1207
BtsCI GGATG 2 cut(s) 202, 595
BtsIMutI CAGTG 2 cut(s) 188, 1138
BveI ACCTGC 1 cut(s) 1073
Cac8I GCNNGC 3 cut(s) 214, 387, 492
CciI TCATGA 2 cut(s) 460, 678
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 2 cut(s) 237, 490
Cfr13I GGNCC 1 cut(s) 577
Csp6I GTAC 5 cut(s) 21, 629, 775, 797, 866
CspAI ACCGGT 1 cut(s) 237
CviAII CATG 4 cut(s) 218, 248, 461, 679
CviQI GTAC 5 cut(s) 21, 629, 775, 797, 866
DdeI CTNAG 3 cut(s) 573, 822, 850
DpnI GATC 6 cut(s) 33, 195, 459, 768, 1089, 1179
DpnII GATC 6 cut(s) 31, 193, 457, 766, 1087, 1177
EaeI YGGCCR 1 cut(s) 1205
Eam1104I CTCTTC 2 cut(s) 837, 910
EarI CTCTTC 2 cut(s) 837, 910
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 577
Eco57I CTGAAG 2 cut(s) 43, 818
Eco72I CACGTG 1 cut(s) 610
Eco88I CYCGRG 1 cut(s) 1171
EcoRII CCWGG 1 cut(s) 1202
Esp3I CGTCTC 2 cut(s) 347, 352
FaeI CATG 4 cut(s) 221, 251, 464, 682
FatI CATG 4 cut(s) 217, 247, 460, 678
FbaI TGATCA 3 cut(s) 457, 766, 1087
FblI GTMKAC 2 cut(s) 159, 827
Fnu4HI GCNGC 6 cut(s) 64, 390, 673, 878, 1039, 1128
FokI GGATG 2 cut(s) 189, 582
Fsp4HI GCNGC 6 cut(s) 64, 390, 673, 878, 1039, 1128
FspBI CTAG 2 cut(s) 506, 1148
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 1 cut(s) 263
GluI GCNGC 6 cut(s) 64, 390, 673, 878, 1039, 1128
GsaI CCCAGC 1 cut(s) 371
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 1207
HapII CCGG 2 cut(s) 238, 491
HhaI GCGC 1 cut(s) 264
Hin1I GRCGYC 2 cut(s) 117, 156
Hin1II CATG 4 cut(s) 221, 251, 464, 682
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HincII GTYRAC 4 cut(s) 160, 499, 828, 1012
HindII GTYRAC 4 cut(s) 160, 499, 828, 1012
HindIII AAGCTT 2 cut(s) 49, 280
HinfI GANTC 6 cut(s) 71, 170, 709, 829, 838, 902
HpaI GTTAAC 1 cut(s) 1012
HpaII CCGG 2 cut(s) 238, 491
HphI GGTGA 5 cut(s) 100, 134, 239, 938, 1097
Hpy166II GTNNAC 6 cut(s) 160, 429, 499, 613, 828, 1012
Hpy188I TCNGA 8 cut(s) 70, 76, 352, 457, 544, 837, 843, 1092
Hpy188III TCNNGA 9 cut(s) 329, 461, 575, 679, 764, 770, 895, 909, 936
Hpy8I GTNNAC 6 cut(s) 160, 429, 499, 613, 828, 1012
Hpy99I CGWCG 6 cut(s) 116, 119, 122, 161, 164, 544
HpyAV CCTTC 2 cut(s) 67, 298
HpyCH4III ACNGT 2 cut(s) 664, 1142
HpyCH4IV ACGT 4 cut(s) 117, 156, 515, 609
HpyCH4V TGCA 4 cut(s) 607, 1082, 1106, 1130
HpyF10VI GCNNNNNNNGC 3 cut(s) 886, 1014, 1133
HpyF3I CTNAG 3 cut(s) 573, 822, 850
HpySE526I ACGT 4 cut(s) 117, 156, 515, 609
Hsp92I GRCGYC 2 cut(s) 117, 156
Hsp92II CATG 4 cut(s) 221, 251, 464, 682
HspAI GCGC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Ksp22I TGATCA 3 cut(s) 457, 766, 1087
KspAI GTTAAC 1 cut(s) 1012
Kzo9I GATC 6 cut(s) 31, 193, 457, 766, 1087, 1177
LmnI GCTCC 4 cut(s) 71, 374, 1035, 1226
Lsp1109I GCAGC 5 cut(s) 50, 401, 889, 1025, 1114
LweI GCATC 2 cut(s) 401, 684
MaeI CTAG 2 cut(s) 506, 1148
MaeII ACGT 4 cut(s) 117, 156, 515, 609
MaeIII GTNAC 2 cut(s) 152, 788
MalI GATC 6 cut(s) 33, 195, 459, 768, 1089, 1179
MboI GATC 6 cut(s) 31, 193, 457, 766, 1087, 1177
MboII GAAGA 9 cut(s) 149, 152, 179, 390, 452, 824, 853, 897, 1038
MfeI CAATTG 2 cut(s) 602, 1131
MflI RGATCY 2 cut(s) 31, 1177
MhlI GDGCHC 3 cut(s) 574, 1004, 1172
MlsI TGGCCA 1 cut(s) 1207
MluCI AATT 8 cut(s) 253, 485, 602, 857, 1065, 1076, 1119, 1131
MluNI TGGCCA 1 cut(s) 1207
MlyI GAGTC 3 cut(s) 65, 823, 896
MmeI TCCRAC 5 cut(s) 93, 99, 327, 522, 924
Mox20I TGGCCA 1 cut(s) 1207
MroNI GCCGGC 1 cut(s) 490
MscI TGGCCA 1 cut(s) 1207
MseI TTAA 2 cut(s) 80, 1011
MslI CAYNNNNRTG 2 cut(s) 222, 434
Msp20I TGGCCA 1 cut(s) 1207
MspA1I CMGCKG 2 cut(s) 63, 371
MspI CCGG 2 cut(s) 238, 491
MspR9I CCNGG 1 cut(s) 1204
MunI CAATTG 2 cut(s) 602, 1131
MvaI CCWGG 1 cut(s) 1204
MwoI GCNNNNNNNGC 3 cut(s) 886, 1014, 1133
NaeI GCCGGC 1 cut(s) 492
NdeII GATC 6 cut(s) 31, 193, 457, 766, 1087, 1177
NgoMIV GCCGGC 1 cut(s) 490
NlaIII CATG 4 cut(s) 221, 251, 464, 682
NmuCI GTSAC 1 cut(s) 152
NsbI TGCGCA 1 cut(s) 263
PagI TCATGA 2 cut(s) 460, 678
PaqCI CACCTGC 1 cut(s) 1073
PcsI WCGNNNNNNNCGW 2 cut(s) 615, 624
PdiI GCCGGC 1 cut(s) 492
PfeI GAWTC 3 cut(s) 170, 709, 838
PflFI GACNNNGTC 2 cut(s) 116, 248
PinAI ACCGGT 1 cut(s) 237
PkrI GCNGC 6 cut(s) 65, 391, 674, 879, 1040, 1129
PleI GAGTC 3 cut(s) 65, 823, 896
PmaCI CACGTG 1 cut(s) 610
PmlI CACGTG 1 cut(s) 610
PpsI GAGTC 3 cut(s) 65, 823, 896
Ppu21I YACGTR 1 cut(s) 610
PsiI TTATAA 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 1202
PspCI CACGTG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 1202
PspPI GGNCC 1 cut(s) 577
PsuI RGATCY 2 cut(s) 31, 1177
PsyI GACNNNGTC 2 cut(s) 116, 248
PvuII CAGCTG 2 cut(s) 63, 371
RsaI GTAC 5 cut(s) 22, 630, 776, 798, 867
RsaNI GTAC 5 cut(s) 21, 629, 775, 797, 866
RseI CAYNNNNRTG 2 cut(s) 222, 434
SalI GTCGAC 2 cut(s) 158, 826
SaqAI TTAA 2 cut(s) 80, 1011
SatI GCNGC 6 cut(s) 64, 390, 673, 878, 1039, 1128
Sau3AI GATC 6 cut(s) 31, 193, 457, 766, 1087, 1177
Sau96I GGNCC 1 cut(s) 577
ScaI AGTACT 2 cut(s) 22, 776
SchI GAGTC 3 cut(s) 65, 823, 896
ScrFI CCNGG 1 cut(s) 1204
SduI GDGCHC 3 cut(s) 574, 1004, 1172
SfaNI GCATC 2 cut(s) 401, 684
SfcI CTRYAG 1 cut(s) 984
SgrDI CGTCGACG 1 cut(s) 158
SinI GGWCC 1 cut(s) 577
SmiMI CAYNNNNRTG 2 cut(s) 222, 434
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
Sse9I AATT 8 cut(s) 253, 485, 602, 857, 1065, 1076, 1119, 1131
SsiI CCGC 5 cut(s) 502, 552, 672, 924, 1015
SspI AATATT 1 cut(s) 589
SspMI CTAG 2 cut(s) 506, 1148
StyD4I CCNGG 1 cut(s) 1202
TaaI ACNGT 2 cut(s) 664, 1142
TaiI ACGT 4 cut(s) 120, 159, 518, 612
TaqI TCGA 5 cut(s) 159, 180, 482, 700, 827
TasI AATT 8 cut(s) 253, 485, 602, 857, 1065, 1076, 1119, 1131
TatI WGTACW 2 cut(s) 20, 774
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 3 cut(s) 170, 709, 838
Tru1I TTAA 2 cut(s) 80, 1011
Tru9I TTAA 2 cut(s) 80, 1011
TscAI CASTG 2 cut(s) 195, 1145
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 5 cut(s) 63, 389, 877, 1038, 1127
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 7 cut(s) 180, 390, 422, 695, 720, 722, 1058
TspGWI ACGGA 1 cut(s) 1155
TspRI CASTG 2 cut(s) 195, 1145
Tth111I GACNNNGTC 2 cut(s) 116, 248
VpaK11BI GGWCC 1 cut(s) 577
XapI RAATTY 2 cut(s) 857, 1076
XmiI GTMKAC 2 cut(s) 159, 827
XspI CTAG 2 cut(s) 506, 1148
ZraI GACGTC 2 cut(s) 118, 157
ZrmI AGTACT 2 cut(s) 22, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.