AT5G04090

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003012
Physical Location & Seq
Reverse (-)
1105352 .. 1108282
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04090.4

Sequence Viewer

Length: 795 bp
ATGATTGTATATTTTCCTTCTGAGTTGACAGTTTGGCAGAAGCTTGAAGAAGAGAACCGCGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCAGATAATGGAATATAACGAACTGCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATCCAACTGCAGGGGCTTCTGTTCGAAACAGGAATGGTTCTCATGTTCCACCAATGAATCAGCAACAATTACTCTATGAACGCAAGGAACCAGATCAATCCTCTCCTAATCTGTCAAGTCCATACCTCAATGGAGGCTCAGCAATTAACACAAATATACCTTCTTATGTGGACTTTTCATCCCATTCTAGAAGAGTTGATCCTTCACCAAACTCGCTCTCCTTGCAGGCCACAAATATGCCTTTGATGCAAGGAATGATCAAGTCTGAGACTGCATATCAAAACTGTGCTCCATACATGTATGGTGGTGAAGCACAGTCCACAGTTGGAGATGTCACCATCGCATCTTTCAGCAATGATTCCAGCAACCAATCCCTGAATGATCCTCTTGTCGATCCAGATGCTCCTACATTTGGCTCGTTAGGACAAATTCCTCAGAACTTCAGCCTCTCTGATCTGACAGCTGATTTTTCCCAGAGTTCAGATATTCTGGAGAGCTACGAGGGATCACCGTTCCTATTGGCTGATGCTGAAAATTTCCTGGACTCTAGCGAAAGGGTAGAACATCAAGGAGACCACGAAAGATTGAGGACCATATCATCAGGCTTCAGTTACGAAAACTTCCGAAGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

264

Amino Acids

29.76

Weight (kDa)

4.71

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 1 - 40 8.9e-17 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 109
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 58
AclWI GGATC 4 cut(s) 353, 536, 548, 673
AcsI RAATTY 3 cut(s) 62, 588, 694
AcuI CTGAAG 2 cut(s) 586, 751
AfiI CCNNNNNNNGG 3 cut(s) 109, 170, 572
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 2 cut(s) 47, 70
AjnI CCWGG 1 cut(s) 699
AluBI AGCT 3 cut(s) 43, 623, 657
AluI AGCT 3 cut(s) 43, 623, 657
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 2 cut(s) 422, 726
AlwI GGATC 4 cut(s) 353, 536, 548, 673
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 3 cut(s) 62, 588, 694
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 750
AsuHPI GGTGA 5 cut(s) 106, 357, 479, 487, 660
AsuII TTCGAA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 750
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 506
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 1 cut(s) 701
BclI TGATCA 1 cut(s) 417
BcoDI GTCTC 2 cut(s) 422, 726
BfaI CTAG 2 cut(s) 348, 708
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 134
BlpI GCTNAGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 701
Bme18I GGWCC 1 cut(s) 750
BmgT120I GGNCC 1 cut(s) 750
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 701
BmsI GCATC 6 cut(s) 147, 169, 396, 512, 550, 676
BpmI CTGGAG 1 cut(s) 671
Bpu1102I GCTNAGC 1 cut(s) 298
Bpu14I TTCGAA 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 726
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 170, 572
Bse3DI GCAATG 1 cut(s) 520
BseBI CCWGG 1 cut(s) 701
BseGI GGATG 2 cut(s) 160, 338
BseLI CCNNNNNNNGG 3 cut(s) 109, 170, 572
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 5 cut(s) 12, 74, 312, 417, 608
BseXI GCAGC 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 451
BslI CCNNNNNNNGG 3 cut(s) 109, 170, 572
BsmAI GTCTC 2 cut(s) 422, 726
BsnI GGCC 1 cut(s) 389
Bso31I GGTCTC 1 cut(s) 726
Bsp119I TTCGAA 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 7 cut(s) 253, 358, 417, 541, 553, 613, 665
Bsp1720I GCTNAGC 1 cut(s) 298
BspACI CCGC 1 cut(s) 58
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 5 cut(s) 13, 75, 311, 418, 607
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 4 cut(s) 353, 536, 548, 673
BspT104I TTCGAA 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 726
BsrDI GCAATG 1 cut(s) 520
BssMI GATC 7 cut(s) 253, 358, 417, 541, 553, 613, 665
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 5 cut(s) 31, 446, 477, 484, 672
Bst6I CTCTTC 2 cut(s) 45, 346
BstBI TTCGAA 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 5 cut(s) 21, 83, 298, 426, 594
BstF5I GGATG 2 cut(s) 160, 338
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 7 cut(s) 256, 361, 420, 544, 556, 616, 668
BstMAI GTCTC 2 cut(s) 422, 726
BstMBI GATC 7 cut(s) 253, 358, 417, 541, 553, 613, 665
BstMWI GCNNNNNNNGC 4 cut(s) 133, 157, 382, 406
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 2 cut(s) 151, 460
BstSCI CCNGG 1 cut(s) 699
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 389
BtgZI GCGATG 1 cut(s) 484
BtsCI GGATG 2 cut(s) 160, 338
Cac8I GCNNGC 1 cut(s) 387
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 750
CviAII CATG 4 cut(s) 91, 148, 203, 457
DdeI CTNAG 5 cut(s) 21, 83, 298, 426, 594
DpnI GATC 7 cut(s) 255, 360, 419, 543, 555, 615, 667
DpnII GATC 7 cut(s) 253, 358, 417, 541, 553, 613, 665
Eam1104I CTCTTC 2 cut(s) 45, 346
EarI CTCTTC 2 cut(s) 45, 346
Eco31I GGTCTC 1 cut(s) 726
Eco47I GGWCC 1 cut(s) 750
Eco57I CTGAAG 2 cut(s) 586, 751
EcoRII CCWGG 1 cut(s) 699
EcoT22I ATGCAT 1 cut(s) 162
FaeI CATG 4 cut(s) 94, 151, 206, 460
FatI CATG 4 cut(s) 90, 147, 202, 456
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 2 cut(s) 147, 325
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 348, 708
GlaI GCGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 1 cut(s) 389
HhaI GCGC 1 cut(s) 153
Hin1II CATG 4 cut(s) 94, 151, 206, 460
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 217, 518, 704
HphI GGTGA 5 cut(s) 106, 357, 479, 487, 660
Hpy166II GTNNAC 3 cut(s) 27, 331, 480
Hpy188I TCNGA 8 cut(s) 22, 84, 427, 597, 613, 618, 643, 785
Hpy188III TCNNGA 3 cut(s) 348, 557, 650
Hpy8I GTNNAC 3 cut(s) 27, 331, 480
HpyAV CCTTC 3 cut(s) 27, 330, 372
HpyCH4III ACNGT 5 cut(s) 31, 446, 477, 484, 672
HpyCH4V TGCA 5 cut(s) 160, 170, 385, 409, 434
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 157, 382, 406
HpyF3I CTNAG 5 cut(s) 21, 83, 298, 426, 594
Hsp92II CATG 4 cut(s) 94, 151, 206, 460
HspAI GCGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 7 cut(s) 253, 358, 417, 541, 553, 613, 665
LmnI GCTCC 2 cut(s) 454, 568
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 6 cut(s) 147, 169, 396, 512, 550, 676
MaeI CTAG 2 cut(s) 348, 708
MaeIII GTNAC 2 cut(s) 493, 770
MalI GATC 7 cut(s) 255, 360, 419, 543, 555, 615, 667
MboI GATC 7 cut(s) 253, 358, 417, 541, 553, 613, 665
MboII GAAGA 3 cut(s) 59, 62, 363
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 6 cut(s) 62, 227, 303, 588, 694, 790
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 2 cut(s) 188, 466
MnlI CCTC 9 cut(s) 78, 271, 287, 296, 555, 603, 617, 655, 741
Mph1103I ATGCAT 1 cut(s) 162
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 701
MvaI CCWGG 1 cut(s) 701
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 4 cut(s) 133, 157, 382, 406
NdeII GATC 7 cut(s) 253, 358, 417, 541, 553, 613, 665
NlaIII CATG 4 cut(s) 94, 151, 206, 460
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 493
NsiI ATGCAT 1 cut(s) 162
NspI RCATGY 2 cut(s) 151, 460
NspV TTCGAA 1 cut(s) 184
PciI ACATGT 1 cut(s) 456
PfeI GAWTC 2 cut(s) 217, 518
PflMI CCANNNNNTGG 1 cut(s) 109
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 698
PpsI GAGTC 1 cut(s) 698
PscI ACATGT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 750
PstI CTGCAG 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 623
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 7 cut(s) 253, 358, 417, 541, 553, 613, 665
Sau96I GGNCC 1 cut(s) 750
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 1 cut(s) 701
SduI GDGCHC 1 cut(s) 451
SetI ASST 5 cut(s) 45, 288, 322, 625, 659
SfaNI GCATC 6 cut(s) 147, 169, 396, 512, 550, 676
SfcI CTRYAG 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 184
SinI GGWCC 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 6 cut(s) 62, 227, 303, 588, 694, 790
SsiI CCGC 1 cut(s) 58
SspMI CTAG 2 cut(s) 348, 708
StyD4I CCNGG 1 cut(s) 699
TaaI ACNGT 5 cut(s) 31, 446, 477, 484, 672
TaqI TCGA 2 cut(s) 184, 552
TasI AATT 6 cut(s) 62, 227, 303, 588, 694, 790
TfiI GAWTC 2 cut(s) 217, 518
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 3 cut(s) 230, 252, 327
Van91I CCANNNNNTGG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 750
XapI RAATTY 3 cut(s) 62, 588, 694
XbaI TCTAGA 1 cut(s) 347
XceI RCATGY 2 cut(s) 151, 460
XspI CTAG 2 cut(s) 348, 708
Zsp2I ATGCAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.