Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002631.1

Orthogroup ID

OG0003012

Physical Location & Seq

Genomic Coordinates Forward (+)

33906 .. 39223

Gene Structure 5318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002631.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgtcaagtggaccagttagacgtgtctcacgtcaagatatacaactggtgcaaaaccttattgagcgatgccttcagctttacatgaaccagaaggaagtggtggaaactctactggaacaagcaaaaatagagcctggtttcacggaacttgtttggcagaagcttgaggaagagaatcgagaattcttcagggcttattacctgaggttaatggtaaagcaacaaataatagaatataacaggttgcttgaacaacaggcgcggttgatgcaccagttacactcgacaggagtttcttcaattcctacctccaatggatctcatatcccatcgatgcatcaaaactcaacatgctatcccccagacagtgtgggaccagcattgaagacagaaaacttacaccatcaagttggttcctgcttacctaatccatttactaatggcgcgtcttcattgcacaatagtatggagaatgctgttaaaatgtctgctcataccaacaggattgatgtcccaccaaacatgctttcgactcagagcaccaacatgggggggctgatgcaaggaatgaatgggggaagtataaaatcagaagttggatattcaggcacttcttacatgtatggtgctgatggcagcaacctggaaacacggcccaatatgggagatggttctgttgcacctttcaatagcgtagagtccaattcacaacccctaaatgaatcacttcttgattcagactcttcctcgtttggtttattaagtcagattcctcgaagtttcagcctctcagatctgacattagatttttctcaaagttcagatatattggagagctatcctcgatcacctttcttggctgcagataatgaaaacttcatggagtctcgtgaaagagaacatcaaggagacaataacaggctggacaccatttcagaaggcgtaagttatgaagattttggcagtgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

324

Amino Acids

36.09

Weight (kDa)

4.92

Isoelectric Point (pI)

59.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090
fragaria_vesca	FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280
malus_domestica	MD00G1088600.v1.1 MD12G1093600.v1.1
prunus_persica	Prupe.7G042200_v2.0.a1 Prupe.7G042200_v2.0.a1
pyrus_communis	pycom12g07910 pycom14g07610
rosa_chinensis	RchiOBHm_Chr2g0125341
rosa_laevigata	RLG00000018855 RLG00000018856 RLG00000018857
rosa_multiflora	Rmu_sc0002631.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118100 Rroxscaffold_2G00133650 Rroxscaffold_5G00353180
rosa_rugosa	Rorug02G0256800
rosa_samantha	Rh2AG315000 Rh2BG323100 Rh2CG305300 Rh2DG341600
rosa_wichuraiana	Rw2G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	265, 449
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	2 cut(s)	59, 175
AfiI	CCNNNNNNNGG	2 cut(s)	552, 665
AflIII	ACRYGT	2 cut(s)	22, 621
AgsI	TTSAA	4 cut(s)	254, 303, 388, 691
AjiI	CACGTC	2 cut(s)	23, 32
AjnI	CCWGG	2 cut(s)	136, 645
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AluBI	AGCT	3 cut(s)	79, 166, 840
AluI	AGCT	3 cut(s)	79, 166, 840
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	3 cut(s)	31, 894, 906
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	1 cut(s)	656
ApeKI	GCWGC	2 cut(s)	639, 863
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	729
AspLEI	GCGC	2 cut(s)	265, 449
AspS9I	GGNCC	3 cut(s)	11, 377, 657
AsuHPI	GGTGA	1 cut(s)	843
AvaII	GGWCC	2 cut(s)	11, 377
AxyI	CCTNAGG	1 cut(s)	206
BauI	CACGAG	1 cut(s)	891
BbsI	GAAGAC	2 cut(s)	395, 444
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	651, 850
BccI	CCATC	4 cut(s)	340, 414, 629, 665
BceAI	ACGGC	1 cut(s)	671
BciT130I	CCWGG	2 cut(s)	138, 647
BcoDI	GTCTC	3 cut(s)	31, 894, 906
BfmI	CTRYAG	1 cut(s)	864
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	2 cut(s)	640, 864
BlsI	GCNGC	2 cut(s)	641, 865
Bme1390I	CCNGG	2 cut(s)	138, 647
Bme18I	GGWCC	2 cut(s)	11, 377
BmgBI	CACGTC	2 cut(s)	23, 32
BmgT120I	GGNCC	3 cut(s)	11, 377, 657
BmiI	GGNNCC	2 cut(s)	378, 418
BmrFI	CCNGG	2 cut(s)	138, 647
BmsI	GCATC	5 cut(s)	59, 261, 327, 349, 552
BpiI	GAAGAC	2 cut(s)	395, 444
BplI	GAGNNNNNCTC	2 cut(s)	829, 861
BpuEI	CTTGAG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	552, 665
Bse1I	ACTGG	4 cut(s)	14, 51, 120, 277
Bse21I	CCTNAGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	138, 647
BseCI	ATCGAT	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	552, 665
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	3 cut(s)	197, 551, 807
BseNI	ACTGG	4 cut(s)	14, 51, 120, 277
BseXI	GCAGC	2 cut(s)	651, 850
Bsh1236I	CGCG	2 cut(s)	265, 449
BshFI	GGCC	1 cut(s)	658
BshVI	ATCGAT	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	545
BslFI	GGGAC	2 cut(s)	390, 500
BslI	CCNNNNNNNGG	2 cut(s)	552, 665
BsmAI	GTCTC	3 cut(s)	31, 894, 906
BsmFI	GGGAC	2 cut(s)	390, 500
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	658
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	320, 796, 848
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	658
BspCNI	CTCAG	3 cut(s)	198, 550, 806
BspDI	ATCGAT	1 cut(s)	335
BspFNI	CGCG	2 cut(s)	265, 449
BspLI	GGNNCC	2 cut(s)	378, 418
BspMAI	CTGCAG	1 cut(s)	868
BspPI	GGATC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	455
BsrI	ACTGG	4 cut(s)	14, 51, 120, 277
BssMI	GATC	3 cut(s)	320, 796, 848
BssSI	CACGAG	1 cut(s)	891
Bst2BI	CACGAG	1 cut(s)	891
Bst2UI	CCWGG	2 cut(s)	138, 647
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	2 cut(s)	168, 751
BstDEI	CTNAG	3 cut(s)	206, 537, 793
BstFNI	CGCG	2 cut(s)	265, 449
BstHHI	GCGC	2 cut(s)	265, 449
BstKTI	GATC	3 cut(s)	323, 799, 851
BstMAI	GTCTC	3 cut(s)	31, 894, 906
BstMBI	GATC	3 cut(s)	320, 796, 848
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	2 cut(s)	138, 647
BstNSI	RCATGY	3 cut(s)	357, 529, 625
BstSCI	CCNGG	2 cut(s)	136, 645
BstSFI	CTRYAG	1 cut(s)	864
BstUI	CGCG	2 cut(s)	265, 449
BstV1I	GCAGC	2 cut(s)	651, 850
BstV2I	GAAGAC	2 cut(s)	395, 444
BstX2I	RGATCY	2 cut(s)	320, 796
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	2 cut(s)	320, 796
Bsu15I	ATCGAT	1 cut(s)	335
Bsu36I	CCTNAGG	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	658
BsuTUI	ATCGAT	1 cut(s)	335
BtgZI	GCGATG	1 cut(s)	82
BtrI	CACGTC	2 cut(s)	23, 32
BtsI	GCAGTG	1 cut(s)	973
BtsIMutI	CAGTG	2 cut(s)	376, 973
CfoI	GCGC	2 cut(s)	265, 449
Cfr13I	GGNCC	3 cut(s)	11, 377, 657
ClaI	ATCGAT	1 cut(s)	335
CseI	GACGC	1 cut(s)	438
CviAII	CATG	6 cut(s)	85, 354, 526, 550, 622, 883
DdeI	CTNAG	3 cut(s)	206, 537, 793
DpnI	GATC	3 cut(s)	322, 798, 850
DpnII	GATC	3 cut(s)	320, 796, 848
Eam1104I	CTCTTC	2 cut(s)	168, 751
EarI	CTCTTC	2 cut(s)	168, 751
Eco47I	GGWCC	2 cut(s)	11, 377
Eco57I	CTGAAG	2 cut(s)	59, 175
Eco81I	CCTNAGG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	136, 645
EcoT22I	ATGCAT	1 cut(s)	342
FaeI	CATG	6 cut(s)	88, 357, 529, 553, 625, 886
FaqI	GGGAC	2 cut(s)	390, 500
FatI	CATG	6 cut(s)	84, 353, 525, 549, 621, 882
Fnu4HI	GCNGC	2 cut(s)	640, 864
Fsp4HI	GCNGC	2 cut(s)	640, 864
GlaI	GCGC	2 cut(s)	264, 448
GluI	GCNGC	2 cut(s)	640, 864
HaeIII	GGCC	1 cut(s)	658
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	2 cut(s)	265, 449
Hin1II	CATG	6 cut(s)	88, 357, 529, 553, 625, 886
Hin6I	GCGC	2 cut(s)	263, 447
HinP1I	GCGC	2 cut(s)	263, 447
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	8 cut(s)	178, 535, 701, 725, 737, 743, 772, 887
HphI	GGTGA	1 cut(s)	843
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	8 cut(s)	540, 595, 742, 771, 796, 801, 826, 940
Hpy188III	TCNNGA	4 cut(s)	35, 182, 734, 893
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	83, 88, 935
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	2 cut(s)	22, 31
HpyCH4V	TGCA	7 cut(s)	52, 274, 340, 460, 565, 683, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	3 cut(s)	206, 537, 793
HpySE526I	ACGT	2 cut(s)	22, 31
Hsp92II	CATG	6 cut(s)	88, 357, 529, 553, 625, 886
HspAI	GCGC	2 cut(s)	263, 447
Kzo9I	GATC	3 cut(s)	320, 796, 848
Lsp1109I	GCAGC	2 cut(s)	651, 850
LweI	GCATC	5 cut(s)	59, 261, 327, 349, 552
MaeII	ACGT	2 cut(s)	22, 31
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	3 cut(s)	322, 798, 850
MboI	GATC	3 cut(s)	320, 796, 848
MboII	GAAGA	7 cut(s)	181, 185, 291, 400, 444, 738, 968
MflI	RGATCY	2 cut(s)	320, 796
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	3 cut(s)	185, 303, 706
MlyI	GAGTC	4 cut(s)	529, 710, 737, 896
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	7 cut(s)	163, 201, 322, 760, 786, 800, 855
Mph1103I	ATGCAT	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	3 cut(s)	212, 483, 764
MslI	CAYNNNNRTG	1 cut(s)	548
MspR9I	CCNGG	2 cut(s)	138, 647
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	2 cut(s)	138, 647
MvnI	CGCG	2 cut(s)	265, 449
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	3 cut(s)	320, 796, 848
NlaIII	CATG	6 cut(s)	88, 357, 529, 553, 625, 886
NlaIV	GGNNCC	2 cut(s)	378, 418
NsiI	ATGCAT	1 cut(s)	342
NspI	RCATGY	3 cut(s)	357, 529, 625
PciI	ACATGT	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	4 cut(s)	178, 725, 737, 772
PkrI	GCNGC	2 cut(s)	641, 865
PleI	GAGTC	4 cut(s)	529, 709, 737, 895
PpsI	GAGTC	4 cut(s)	529, 709, 737, 895
PscI	ACATGT	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	136, 645
PspGI	CCWGG	2 cut(s)	136, 645
PspN4I	GGNNCC	2 cut(s)	378, 418
PspPI	GGNCC	3 cut(s)	11, 377, 657
PstI	CTGCAG	1 cut(s)	868
PsuI	RGATCY	2 cut(s)	320, 796
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	3 cut(s)	212, 483, 764
SatI	GCNGC	2 cut(s)	640, 864
Sau3AI	GATC	3 cut(s)	320, 796, 848
Sau96I	GGNCC	3 cut(s)	11, 377, 657
SchI	GAGTC	4 cut(s)	529, 710, 737, 896
ScrFI	CCNGG	2 cut(s)	138, 647
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	5 cut(s)	59, 261, 327, 349, 552
SfcI	CTRYAG	1 cut(s)	864
SinI	GGWCC	2 cut(s)	11, 377
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	185, 303, 706
SsiI	CCGC	1 cut(s)	265
StyD4I	CCNGG	2 cut(s)	136, 645
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	2 cut(s)	25, 34
TaqI	TCGA	6 cut(s)	181, 287, 335, 533, 778, 847
TasI	AATT	3 cut(s)	185, 303, 706
TfiI	GAWTC	4 cut(s)	178, 725, 737, 772
Tru1I	TTAA	3 cut(s)	212, 483, 764
Tru9I	TTAA	3 cut(s)	212, 483, 764
TscAI	CASTG	2 cut(s)	376, 973
TseI	GCWGC	2 cut(s)	639, 863
TspDTI	ATGAA	7 cut(s)	101, 444, 587, 738, 871, 888, 969
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	376, 973
VpaK11BI	GGWCC	2 cut(s)	11, 377
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	3 cut(s)	357, 529, 625
XmnI	GAANNNNTTC	1 cut(s)	729
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.