Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003012

Physical Location & Seq

Genomic Coordinates Reverse (-)

26915232 .. 26916251

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0256800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCATTTCCAACTCATCAAAAGTGGGGCCCACACGGAAGTGAAATTCCCAAACTAACCCTGGGCAACAGAATATGGAAAAATCCAAAATTAATTCCAGCTTTAAGCGCCACCACCACCACCACCTTCACCACCGTCCCCACCGCCAAGCCCTCCTTTTACACTTCTTCTGACCCTGAAAACTTCCAAGCCACCTTCAACCTCAACAGCCTCTACCACTCCTCCCACTCCTACCTCCGCCACTTCCTCGCCTCCGCCGCCGAAGTCACCGACGACCTCCAGACCCTCGTCTTCGTCGACGTTGACCGCAGGATCGTCATCTCCTGTCGCCCCTCCACACTGCGATTCGTCGACAATTTCCTTGTGTTGACATGCGCCGTCGTGCTGGGGTTTAGGGTTTTGGTTGGGTTGGTGAGGTTAGGGTTTGGGAGCAGGTCGGGTTACGGAAGGGAGAAGGTGGTGACGAGGAGGGATAGGAGTCTTGGCGGGAAAGAGGTTGTGGTAGCGAGGATAGAGAAGCCAAGAGCAGAGGAGGTTAGAGTCAAGAAGAACAGGGGTTTGGGGATTTTGGATAATCACCTATCGTCGGTGAGGAAGAGCTCAATGGTGGCTGGGATGGAGAGAGTGTTTAAGAATCGGGTTCGCTTCAGGGAGAAGCTTCCCCAATGGTGGCCAACTACAACTTCCCCAAGAGGAAGAAGAAGAGGAGAGGAGGAGAAAGGTGGGTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

244

Amino Acids

27.65

Weight (kDa)

10.79

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090
fragaria_vesca	FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280
malus_domestica	MD00G1088600.v1.1 MD12G1093600.v1.1
prunus_persica	Prupe.7G042200_v2.0.a1 Prupe.7G042200_v2.0.a1
pyrus_communis	pycom12g07910 pycom14g07610
rosa_chinensis	RchiOBHm_Chr2g0125341
rosa_laevigata	RLG00000018855 RLG00000018856 RLG00000018857
rosa_multiflora	Rmu_sc0002631.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118100 Rroxscaffold_2G00133650 Rroxscaffold_5G00353180
rosa_rugosa	Rorug02G0256800
rosa_samantha	Rh2AG315000 Rh2BG323100 Rh2CG305300 Rh2DG341600
rosa_wichuraiana	Rw2G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccI	GTMKAC	2 cut(s)	297, 351
AciI	CCGC	6 cut(s)	144, 238, 255, 258, 307, 486
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	631
AfiI	CCNNNNNNNGG	2 cut(s)	586, 669
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	60
AjuI	GAANNNNNNNTTGG	4 cut(s)	542, 574, 667, 699
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	3 cut(s)	101, 600, 658
AluI	AGCT	3 cut(s)	101, 600, 658
Alw21I	GWGCWC	1 cut(s)	602
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	28, 671
ApaI	GGGCCC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	45
AseI	ATTAAT	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	110, 377
AspS9I	GGNCC	2 cut(s)	28, 29
AsuHPI	GGTGA	6 cut(s)	121, 259, 424, 472, 569, 601
BaeGI	GKGCMC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	673
BanII	GRGCYC	2 cut(s)	32, 602
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	602
BccI	CCATC	1 cut(s)	610
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	423
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	28, 29
BmiI	GGNNCC	2 cut(s)	29, 30
BmrFI	CCNGG	1 cut(s)	62
BoxI	GACNNNNGTC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	60, 61
BsaXI	ACNNNNNCTCC	4 cut(s)	206, 236, 611, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 669
Bse8I	GATNNNNATC	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	60, 61
BseGI	GGATG	1 cut(s)	621
BseJI	GATNNNNATC	1 cut(s)	317
BseLI	CCNNNNNNNGG	2 cut(s)	586, 669
BseRI	GAGGAG	6 cut(s)	211, 481, 545, 720, 725, 728
BseSI	GKGCMC	1 cut(s)	32
BseYI	CCCAGC	2 cut(s)	385, 611
BshFI	GGCC	2 cut(s)	30, 673
BsiHKAI	GWGCWC	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	586, 669
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	30, 673
Bsp120I	GGGCCC	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	32, 602
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	6 cut(s)	144, 238, 255, 258, 307, 486
BspANI	GGCC	2 cut(s)	30, 673
BspLI	GGNNCC	2 cut(s)	29, 30
BspMI	ACCTGC	1 cut(s)	423
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	1 cut(s)	590
BssECI	CCNNGG	2 cut(s)	60, 61
BssMI	GATC	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	2 cut(s)	590, 697
BstF5I	GGATG	1 cut(s)	621
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 377
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 257
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	375
BstPAI	GACNNNNGTC	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	30, 673
BtsCI	GGATG	1 cut(s)	621
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	423
CfoI	GCGC	2 cut(s)	110, 377
Cfr13I	GGNCC	2 cut(s)	28, 29
CviAII	CATG	1 cut(s)	372
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
EaeI	YGGCCR	1 cut(s)	671
Eam1104I	CTCTTC	2 cut(s)	590, 697
EarI	CTCTTC	2 cut(s)	590, 697
EciI	GGCGGA	2 cut(s)	227, 244
Ecl136II	GAGCTC	1 cut(s)	600
Eco24I	GRGCYC	2 cut(s)	32, 602
Eco53kI	GAGCTC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	32, 602
FaeI	CATG	1 cut(s)	375
FaiI	YATR	2 cut(s)	76, 373
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	1 cut(s)	371
FauI	CCCGC	1 cut(s)	479
FblI	GTMKAC	2 cut(s)	297, 351
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	628
FriOI	GRGCYC	2 cut(s)	32, 602
Fsp4HI	GCNGC	1 cut(s)	258
GlaI	GCGC	2 cut(s)	109, 376
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	2 cut(s)	389, 615
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	30, 673
HhaI	GCGC	2 cut(s)	110, 377
Hin1II	CATG	1 cut(s)	375
Hin6I	GCGC	2 cut(s)	108, 375
HinP1I	GCGC	2 cut(s)	108, 375
HincII	GTYRAC	4 cut(s)	298, 304, 352, 369
HindII	GTYRAC	4 cut(s)	298, 304, 352, 369
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	4 cut(s)	345, 478, 540, 634
HphI	GGTGA	6 cut(s)	121, 259, 424, 472, 569, 601
Hpy166II	GTNNAC	4 cut(s)	298, 304, 352, 369
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	280, 544
Hpy8I	GTNNAC	4 cut(s)	298, 304, 352, 369
Hpy99I	CGWCG	6 cut(s)	275, 299, 302, 353, 383, 589
HpyAV	CCTTC	4 cut(s)	136, 205, 441, 448
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 257
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	375
HspAI	GCGC	2 cut(s)	108, 375
Kzo9I	GATC	1 cut(s)	312
LguI	GCTCTTC	1 cut(s)	590
LmnI	GCTCC	1 cut(s)	429
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	3 cut(s)	265, 440, 460
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	7 cut(s)	159, 283, 559, 607, 708, 711, 714
MhlI	GDGCHC	2 cut(s)	32, 602
MlsI	TGGCCA	1 cut(s)	673
MluCI	AATT	4 cut(s)	45, 89, 93, 355
MluNI	TGGCCA	1 cut(s)	673
MlyI	GAGTC	2 cut(s)	487, 549
MmeI	TCCRAC	1 cut(s)	35
Mox20I	TGGCCA	1 cut(s)	673
MscI	TGGCCA	1 cut(s)	673
MseI	TTAA	3 cut(s)	92, 104, 630
MslI	CAYNNNNRTG	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	673
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	107, 257
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	375
NlaIV	GGNNCC	2 cut(s)	29, 30
NmuCI	GTSAC	2 cut(s)	265, 460
NspI	RCATGY	1 cut(s)	375
OliI	CACNNNNGTG	1 cut(s)	39
PasI	CCCWGGG	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	345, 634
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	486, 548
PpsI	GAGTC	2 cut(s)	486, 548
PshAI	GACNNNNGTC	1 cut(s)	287
PshBI	ATTAAT	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	60
PspFI	CCCAGC	2 cut(s)	385, 611
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	29, 30
PspOMI	GGGCCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	28, 29
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	602
SalI	GTCGAC	2 cut(s)	296, 350
SapI	GCTCTTC	1 cut(s)	590
SaqAI	TTAA	3 cut(s)	92, 104, 630
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	2 cut(s)	28, 29
SchI	GAGTC	2 cut(s)	487, 549
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	2 cut(s)	32, 602
SgrDI	CGTCGACG	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	4 cut(s)	45, 89, 93, 355
SsiI	CCGC	6 cut(s)	144, 238, 255, 258, 307, 486
SstI	GAGCTC	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	297, 351
TasI	AATT	4 cut(s)	45, 89, 93, 355
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	345, 634
Tru1I	TTAA	3 cut(s)	92, 104, 630
Tru9I	TTAA	3 cut(s)	92, 104, 630
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	2 cut(s)	265, 460
Tsp45I	GTSAC	2 cut(s)	265, 460
TspGWI	ACGGA	2 cut(s)	51, 459
TspRI	CASTG	1 cut(s)	345
VspI	ATTAAT	1 cut(s)	92
XapI	RAATTY	1 cut(s)	45
XceI	RCATGY	1 cut(s)	375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmiI	GTMKAC	2 cut(s)	297, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.