Rroxscaffold_2G00133650

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003012
Physical Location & Seq
Reverse (-)
71098193 .. 71107411
9219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133650.1

Sequence Viewer

Length: 354 bp
ATGTATGGTGCTGATGGCAGCAACCTGGAAACACGGCCCAATATGGGAGATGCTTCTGTTGCACCTTTCAATAGCGTAGAGTCCAATTCACAACCCCTAAATGAATCACTTCTTGATTCAGACTCTTCCACGTTTGGTTTATTAAGTCAGATTCCTCGAAGTTTCAGCCTCTCAGATCTGACATTAGATTTTTCTCAAAGTTCAGATATATTGGAGAGCTATCCTCGATCACCTTTCTTGGCTACTGATAATGAAAACTTCATGGAGTCTCGTGAAAGAGAACATCAAGGAGACAATAACAGGCTGCACACCATTTCAGAAGGCGTAAGTTATGAAGATTTTGGCAGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

117

Amino Acids

12.94

Weight (kDa)

4.11

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 273, 285
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 18, 304
Asp700I GAANNNNTTC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 222
BauI CACGAG 1 cut(s) 270
BbvI GCAGC 2 cut(s) 30, 291
BccI CCATC 1 cut(s) 8
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 273, 285
BglII AGATCT 1 cut(s) 175
BisI GCNGC 2 cut(s) 19, 305
BlsI GCNGC 2 cut(s) 20, 306
Bme1390I CCNGG 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 208, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 186
BseXI GCAGC 2 cut(s) 30, 291
BsgI GTGCAG 1 cut(s) 290
BshFI GGCC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 2 cut(s) 273, 285
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 175, 227
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 185
BssMI GATC 2 cut(s) 175, 227
BssSI CACGAG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 172
BstKTI GATC 2 cut(s) 178, 230
BstMAI GTCTC 2 cut(s) 273, 285
BstMBI GATC 2 cut(s) 175, 227
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 30, 291
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 36
CviAII CATG 1 cut(s) 262
CviJI RGCY 5 cut(s) 37, 168, 219, 242, 304
CviKI_1 RGCY 5 cut(s) 37, 168, 219, 242, 304
DdeI CTNAG 1 cut(s) 172
DpnI GATC 2 cut(s) 177, 229
DpnII GATC 2 cut(s) 175, 227
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 265
FaiI YATR 5 cut(s) 6, 44, 209, 263, 333
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 19, 305
Fsp4HI GCNGC 2 cut(s) 19, 305
GluI GCNGC 2 cut(s) 19, 305
HaeIII GGCC 1 cut(s) 37
Hin1II CATG 1 cut(s) 265
HinfI GANTC 6 cut(s) 80, 104, 116, 122, 151, 266
HphI GGTGA 1 cut(s) 222
Hpy188I TCNGA 6 cut(s) 121, 150, 175, 180, 205, 319
Hpy188III TCNNGA 2 cut(s) 113, 272
HpyAV CCTTC 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 62, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 172
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 2 cut(s) 175, 227
LpnPI CCDG 3 cut(s) 11, 38, 286
Lsp1109I GCAGC 2 cut(s) 30, 291
LweI GCATC 1 cut(s) 40
MaeII ACGT 1 cut(s) 131
MalI GATC 2 cut(s) 177, 229
MboI GATC 2 cut(s) 175, 227
MboII GAAGA 2 cut(s) 117, 347
MflI RGATCY 1 cut(s) 175
MluCI AATT 1 cut(s) 85
MlyI GAGTC 3 cut(s) 89, 116, 275
MnlI CCTC 3 cut(s) 165, 179, 234
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 2 cut(s) 175, 227
NlaIII CATG 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 104, 116, 151
PkrI GCNGC 2 cut(s) 20, 306
PleI GAGTC 3 cut(s) 88, 116, 274
PpsI GAGTC 3 cut(s) 88, 116, 274
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 175
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 19, 305
Sau3AI GATC 2 cut(s) 175, 227
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 3 cut(s) 89, 116, 275
ScrFI CCNGG 1 cut(s) 26
SetI ASST 5 cut(s) 27, 67, 134, 221, 235
SfaNI GCATC 1 cut(s) 40
Sse9I AATT 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 24
TaiI ACGT 1 cut(s) 134
TaqI TCGA 2 cut(s) 157, 226
TasI AATT 1 cut(s) 85
TfiI GAWTC 3 cut(s) 104, 116, 151
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 352
TseI GCWGC 2 cut(s) 18, 304
TspDTI ATGAA 4 cut(s) 117, 250, 267, 348
TspRI CASTG 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.