Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003012

Physical Location & Seq

Genomic Coordinates Forward (+)

39037921 .. 39045397

Gene Structure 7477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG323100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTAAAGCAACAAATAATAGAATATAACAGGTTGCTTGAACAACAGGCGCGGTTGATGCACCAGTTACACTCGACAGGAGTTTCTTCAATTCCTACCTCCAATGGATCTCATATCCCATCGATGCATCAAAACTCAACATGCTATCCCCCAGACAGTGTGGGACCAGCATTGAAGACAGAAAACTTACACCATCAAGTTGGTTCCTGCTTACCTAATCCATTTACTAATGGCGCGTCTTCATTGCACAATAGTATGGAGAATGCTGTTAAAATGTCTGCTCATACCAACAGGATTGATGTCCCACCAAACATGCTTTCGACTCAGAGCACCAACATGGGGGGGCTGATGCAAGGAATGAATGGGGGAATTATAAAATCAGAAGTTGGATATTCAGGCACTTCTTACATGTATGGTGCTGATGGCAGCAACCTGGAAACACGGCCCAATATGGGAGATGCTTCTGTTGCACCTTTCAATAGCGTAGAGTCCAATTCACAACCCCTAAATGAATCACTTCTTGATTCAGACTCTTCCTCGTTTGGTTTATTAAGTCAGATTCCTCGAAGTTTCAGCCTCTCAGATCTGACATTGGATTTTTCTCAAAGTTCAGATATATTGGAGAGCTATCCTCGATCACCTTTCTTGGCTGCAGATAATGAAAACTTCATGGAGTCTCGTGAAAGAGAACATCAAGGAGACAATAACAGGCTGGACACCATTTCAGAAGGCGTAAGTTATGAAGATTTTGGCAGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

253

Amino Acids

27.54

Weight (kDa)

4.79

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090
fragaria_vesca	FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280
malus_domestica	MD00G1088600.v1.1 MD12G1093600.v1.1
prunus_persica	Prupe.7G042200_v2.0.a1 Prupe.7G042200_v2.0.a1
pyrus_communis	pycom12g07910 pycom14g07610
rosa_chinensis	RchiOBHm_Chr2g0125341
rosa_laevigata	RLG00000018855 RLG00000018856 RLG00000018857
rosa_multiflora	Rmu_sc0002631.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118100 Rroxscaffold_2G00133650 Rroxscaffold_5G00353180
rosa_rugosa	Rorug02G0256800
rosa_samantha	Rh2AG315000 Rh2BG323100 Rh2CG305300 Rh2DG341600
rosa_wichuraiana	Rw2G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AccII	CGCG	2 cut(s)	52, 236
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	339, 452
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	4 cut(s)	41, 90, 175, 478
AjnI	CCWGG	1 cut(s)	432
AjuI	GAANNNNNNNTTGG	2 cut(s)	301, 333
AluBI	AGCT	1 cut(s)	627
AluI	AGCT	1 cut(s)	627
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	681, 693
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	2 cut(s)	426, 650
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	2 cut(s)	52, 236
AspS9I	GGNCC	2 cut(s)	164, 444
AsuHPI	GGTGA	1 cut(s)	630
AvaII	GGWCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	678
BbsI	GAAGAC	2 cut(s)	182, 231
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	438, 637
BccI	CCATC	3 cut(s)	127, 201, 416
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	681, 693
BfmI	CTRYAG	1 cut(s)	651
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	2 cut(s)	427, 651
BlsI	GCNGC	2 cut(s)	428, 652
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 444
BmiI	GGNNCC	2 cut(s)	165, 205
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	5 cut(s)	48, 114, 136, 339, 448
BpiI	GAAGAC	2 cut(s)	182, 231
BplI	GAGNNNNNCTC	2 cut(s)	616, 648
Bsa29I	ATCGAT	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 452
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	434
BseCI	ATCGAT	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	339, 452
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	338, 594
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	438, 637
Bsh1236I	CGCG	2 cut(s)	52, 236
BshFI	GGCC	1 cut(s)	445
BshVI	ATCGAT	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	332
BslFI	GGGAC	2 cut(s)	177, 287
BslI	CCNNNNNNNGG	2 cut(s)	339, 452
BsmAI	GTCTC	2 cut(s)	681, 693
BsmFI	GGGAC	2 cut(s)	177, 287
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	3 cut(s)	107, 583, 635
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	2 cut(s)	337, 593
BspDI	ATCGAT	1 cut(s)	122
BspFNI	CGCG	2 cut(s)	52, 236
BspLI	GGNNCC	2 cut(s)	165, 205
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	3 cut(s)	107, 583, 635
BssSI	CACGAG	1 cut(s)	678
Bst2BI	CACGAG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	538
BstDEI	CTNAG	2 cut(s)	324, 580
BstFNI	CGCG	2 cut(s)	52, 236
BstHHI	GCGC	2 cut(s)	52, 236
BstKTI	GATC	3 cut(s)	110, 586, 638
BstMAI	GTCTC	2 cut(s)	681, 693
BstMBI	GATC	3 cut(s)	107, 583, 635
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 467
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	3 cut(s)	144, 316, 412
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	2 cut(s)	52, 236
BstV1I	GCAGC	2 cut(s)	438, 637
BstV2I	GAAGAC	2 cut(s)	182, 231
BstX2I	RGATCY	2 cut(s)	107, 583
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	2 cut(s)	107, 583
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	445
BsuTUI	ATCGAT	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	760
BtsIMutI	CAGTG	2 cut(s)	163, 760
CfoI	GCGC	2 cut(s)	52, 236
Cfr13I	GGNCC	2 cut(s)	164, 444
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	1 cut(s)	225
CviAII	CATG	5 cut(s)	141, 313, 337, 409, 670
CviJI	RGCY	6 cut(s)	346, 445, 576, 627, 650, 712
CviKI_1	RGCY	6 cut(s)	346, 445, 576, 627, 650, 712
DdeI	CTNAG	2 cut(s)	324, 580
DpnI	GATC	3 cut(s)	109, 585, 637
DpnII	GATC	3 cut(s)	107, 583, 635
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	129
FaeI	CATG	5 cut(s)	144, 316, 340, 412, 673
FaqI	GGGAC	2 cut(s)	177, 287
FatI	CATG	5 cut(s)	140, 312, 336, 408, 669
Fnu4HI	GCNGC	2 cut(s)	427, 651
Fsp4HI	GCNGC	2 cut(s)	427, 651
GlaI	GCGC	2 cut(s)	51, 235
GluI	GCNGC	2 cut(s)	427, 651
HaeIII	GGCC	1 cut(s)	445
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	2 cut(s)	52, 236
Hin1II	CATG	5 cut(s)	144, 316, 340, 412, 673
Hin6I	GCGC	2 cut(s)	50, 234
HinP1I	GCGC	2 cut(s)	50, 234
HinfI	GANTC	7 cut(s)	322, 488, 512, 524, 530, 559, 674
HphI	GGTGA	1 cut(s)	630
Hpy188I	TCNGA	8 cut(s)	327, 382, 529, 558, 583, 588, 613, 727
Hpy188III	TCNNGA	2 cut(s)	521, 680
HpyAV	CCTTC	1 cut(s)	722
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	6 cut(s)	61, 127, 247, 352, 470, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 467
HpyF3I	CTNAG	2 cut(s)	324, 580
Hsp92II	CATG	5 cut(s)	144, 316, 340, 412, 673
HspAI	GCGC	2 cut(s)	50, 234
Kzo9I	GATC	3 cut(s)	107, 583, 635
Lsp1109I	GCAGC	2 cut(s)	438, 637
LweI	GCATC	5 cut(s)	48, 114, 136, 339, 448
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	3 cut(s)	109, 585, 637
MboI	GATC	3 cut(s)	107, 583, 635
MboII	GAAGA	5 cut(s)	78, 187, 231, 525, 755
MflI	RGATCY	2 cut(s)	107, 583
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	3 cut(s)	90, 369, 493
MlyI	GAGTC	4 cut(s)	316, 497, 524, 683
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	5 cut(s)	109, 547, 573, 587, 642
Mph1103I	ATGCAT	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	2 cut(s)	270, 551
MslI	CAYNNNNRTG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	2 cut(s)	52, 236
MwoI	GCNNNNNNNGC	2 cut(s)	58, 467
NdeII	GATC	3 cut(s)	107, 583, 635
NlaIII	CATG	5 cut(s)	144, 316, 340, 412, 673
NlaIV	GGNNCC	2 cut(s)	165, 205
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	3 cut(s)	144, 316, 412
PciI	ACATGT	1 cut(s)	408
PctI	GAATGC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	3 cut(s)	512, 524, 559
PkrI	GCNGC	2 cut(s)	428, 652
PleI	GAGTC	4 cut(s)	316, 496, 524, 682
PpsI	GAGTC	4 cut(s)	316, 496, 524, 682
PscI	ACATGT	1 cut(s)	408
PsiI	TTATAA	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	165, 205
PspPI	GGNCC	2 cut(s)	164, 444
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	2 cut(s)	107, 583
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	270, 551
SatI	GCNGC	2 cut(s)	427, 651
Sau3AI	GATC	3 cut(s)	107, 583, 635
Sau96I	GGNCC	2 cut(s)	164, 444
SchI	GAGTC	4 cut(s)	316, 497, 524, 683
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	7 cut(s)	35, 101, 217, 435, 475, 629, 643
SfaNI	GCATC	5 cut(s)	48, 114, 136, 339, 448
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	3 cut(s)	90, 369, 493
SsiI	CCGC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	5 cut(s)	74, 122, 320, 565, 634
TasI	AATT	3 cut(s)	90, 369, 493
TfiI	GAWTC	3 cut(s)	512, 524, 559
Tru1I	TTAA	2 cut(s)	270, 551
Tru9I	TTAA	2 cut(s)	270, 551
TscAI	CASTG	2 cut(s)	163, 760
TseI	GCWGC	2 cut(s)	426, 650
TspDTI	ATGAA	6 cut(s)	231, 374, 525, 658, 675, 756
TspRI	CASTG	2 cut(s)	163, 760
VpaK11BI	GGWCC	1 cut(s)	164
XceI	RCATGY	3 cut(s)	144, 316, 412
XmnI	GAANNNNTTC	1 cut(s)	516
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.