Rroxscaffold_2G00118100

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003012
Physical Location & Seq
Reverse (-)
49245933 .. 49253306
7374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118100.1

Sequence Viewer

Length: 414 bp
ATGCAAGGAATAAATGGGGGAATTATAAAATCAGAAGTTGGATATTCAGGCACTTCTTACATGTATGGTGCTGATGGCAGCAACCTGGAAACACGGCCCAATATGGGAGATGCTTCTGTTGCACCTTTCAATAGCGTAGAGTCCAATTCACAACCCCTAAATGAATCACTTCTTGATTCAGACTCTTCCACGTTTGGTTTATTAAGTCAGATTCCTCGAAGTTTCAGCCTCTCAGATCTGACATTAGATTTTTCTCAAAGTTCAGATATATTGGAGAGCTATCCTCGATCACCTTTCTTGGCTACTGATAATGAAAACTTCATGGAGTCTCGTGAAAGAGAACATCAAGGAGACAATAACAGGCTGGACACCATTTCAGAAGGCGTGAGTTATGAAGATTTTGGCAGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

137

Amino Acids

14.96

Weight (kDa)

4.05

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
Alw26I GTCTC 2 cut(s) 333, 345
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 282
BauI CACGAG 1 cut(s) 330
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 333, 345
BglII AGATCT 1 cut(s) 235
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 268, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 90
BshFI GGCC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 333, 345
BsnI GGCC 1 cut(s) 97
Bsp143I GATC 2 cut(s) 235, 287
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 245
BssMI GATC 2 cut(s) 235, 287
BssSI CACGAG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 232
BstKTI GATC 2 cut(s) 238, 290
BstMAI GTCTC 2 cut(s) 333, 345
BstMBI GATC 2 cut(s) 235, 287
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 96
CviAII CATG 2 cut(s) 61, 322
CviJI RGCY 5 cut(s) 97, 228, 279, 302, 364
CviKI_1 RGCY 5 cut(s) 97, 228, 279, 302, 364
DdeI CTNAG 1 cut(s) 232
DpnI GATC 2 cut(s) 237, 289
DpnII GATC 2 cut(s) 235, 287
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 64, 325
FaiI YATR 7 cut(s) 26, 62, 66, 104, 269, 323, 393
FatI CATG 2 cut(s) 60, 321
Fnu4HI GCNGC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 1 cut(s) 97
Hin1II CATG 2 cut(s) 64, 325
HinfI GANTC 6 cut(s) 140, 164, 176, 182, 211, 326
HphI GGTGA 1 cut(s) 282
Hpy188I TCNGA 7 cut(s) 34, 181, 210, 235, 240, 265, 379
Hpy188III TCNNGA 2 cut(s) 173, 332
HpyAV CCTTC 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 4, 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 2 cut(s) 64, 325
Kzo9I GATC 2 cut(s) 235, 287
LpnPI CCDG 5 cut(s) 33, 71, 98, 346, 350
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 191
MalI GATC 2 cut(s) 237, 289
MboI GATC 2 cut(s) 235, 287
MboII GAAGA 2 cut(s) 177, 407
MflI RGATCY 1 cut(s) 235
MluCI AATT 2 cut(s) 21, 145
MlyI GAGTC 3 cut(s) 149, 176, 335
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 3 cut(s) 225, 239, 294
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 2 cut(s) 235, 287
NlaIII CATG 2 cut(s) 64, 325
NspI RCATGY 1 cut(s) 64
PciI ACATGT 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 164, 176, 211
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 3 cut(s) 148, 176, 334
PpsI GAGTC 3 cut(s) 148, 176, 334
PscI ACATGT 1 cut(s) 60
PsiI TTATAA 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspPI GGNCC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 235
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 235, 287
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 3 cut(s) 149, 176, 335
ScrFI CCNGG 1 cut(s) 86
SetI ASST 5 cut(s) 87, 127, 194, 281, 295
SfaNI GCATC 1 cut(s) 100
Sse9I AATT 2 cut(s) 21, 145
StyD4I CCNGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 217, 286
TasI AATT 2 cut(s) 21, 145
TfiI GAWTC 3 cut(s) 164, 176, 211
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 1 cut(s) 412
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 4 cut(s) 177, 310, 327, 408
TspRI CASTG 1 cut(s) 412
XceI RCATGY 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.