Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003012

Physical Location & Seq

Genomic Coordinates Forward (+)

7807753 .. 7813888

Gene Structure 6136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G042200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCGAGTGGTTCTGTTAGACAGGTCTCGCGTCAAGATATACAACTGGTGCAGAACCTTATCGAGCGATGTCTCCAGCTTTACATGAACCAGAAAGAAGTGGTAGATACTCTACTGGACCAGGCAAAAATAGAGCCTGGTTTCACGGAACTTGTTTGGCAGAAGCTTGAGGAAGAGAATCGGGAATTCTTCAGGGCTTATTATTTAAGATTGATGGTGAAGCACCAAATAATAGAATATAACAGGTTGCTTGAGCAACAGGTGAGGTTAATGAGTCAGTTGCACTCAAGTGGAGTTGCTTCAATACCTAGTACCAATGGATCTCACATTTCACCAATGCACCAAAACGCCCCATGCTATGCGCCAGAGCATGTAGGACCAGCATTGAAGACAGAAAATATACACCACCAAGTTGGTTCCTGCGTACCTAATGCATTTACGAATGGTGGGTCTTCATTGCACACTAGTATGCACAATGCTGTTAAAATGTCTCCTCATACCAGTAGGATTGATGTCCCACCAAACATGCTTTCGAATCAGAGCTCCAACGTAGGTCTGATGCAAGGAATAAATGGGGGAATTATCAAATCAGAAGTTGGATATTCAGGCAGTTCTTACATGTTTAGCGCTGATGCAAACATCCTGGAAGCACGGCCCACTATTGGAGATGCTTCTGTTGCAGCATTCAACAGCGTAGAGTCCAACTCACAGCCCCTAAATGAATCACTTCTTGACGCAGACTCTTCATCATTTGGTTTTTTACGTCAGATTCCTCGAATTTTCAGCCTCTCGGACCTGACAGCTGACTTTTCGCAGAGCTCAGACATACTGGAGAGCTATCCTAGATCACCCTTCTTAGCAACAGATAATGATAACTTCCTGGATTCTCGTGAAAGAGAACATCAAGGAGACAATAACCGGTTGGACACCATTTCAGAAGGCGTAAGCTATGAAGATTTTGGCAGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

324

Amino Acids

35.88

Weight (kDa)

5.06

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090
fragaria_vesca	FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280
malus_domestica	MD00G1088600.v1.1 MD12G1093600.v1.1
prunus_persica	Prupe.7G042200_v2.0.a1 Prupe.7G042200_v2.0.a1
pyrus_communis	pycom12g07910 pycom14g07610
rosa_chinensis	RchiOBHm_Chr2g0125341
rosa_laevigata	RLG00000018855 RLG00000018856 RLG00000018857
rosa_multiflora	Rmu_sc0002631.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118100 Rroxscaffold_2G00133650 Rroxscaffold_5G00353180
rosa_rugosa	Rorug02G0256800
rosa_samantha	Rh2AG315000 Rh2BG323100 Rh2CG305300 Rh2DG341600
rosa_wichuraiana	Rw2G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	31
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	2 cut(s)	185, 777
AcuI	CTGAAG	1 cut(s)	175
AfaI	GTAC	2 cut(s)	313, 426
AfeI	AGCGCT	1 cut(s)	628
AfiI	CCNNNNNNNGG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	618
AgeI	ACCGGT	1 cut(s)	918
AgsI	TTSAA	3 cut(s)	303, 388, 688
AhlI	ACTAGT	1 cut(s)	464
AjnI	CCWGG	4 cut(s)	120, 136, 642, 879
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	7 cut(s)	79, 166, 543, 803, 819, 837, 948
AluI	AGCT	7 cut(s)	79, 166, 543, 803, 819, 837, 948
Alw21I	GWGCWC	2 cut(s)	545, 821
Alw26I	GTCTC	4 cut(s)	31, 77, 495, 903
AlwI	GGATC	1 cut(s)	328
Aor51HI	AGCGCT	1 cut(s)	628
AoxI	GGCC	1 cut(s)	653
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	2 cut(s)	185, 777
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AsiGI	ACCGGT	1 cut(s)	918
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	2 cut(s)	364, 629
AspS9I	GGNCC	4 cut(s)	118, 377, 654, 793
AsuHPI	GGTGA	4 cut(s)	229, 274, 324, 840
AsuII	TTCGAA	1 cut(s)	533
AvaII	GGWCC	3 cut(s)	118, 377, 793
BanII	GRGCYC	2 cut(s)	545, 821
BauI	CACGAG	1 cut(s)	888
BbsI	GAAGAC	2 cut(s)	395, 444
Bbv12I	GWGCWC	2 cut(s)	545, 821
BbvI	GCAGC	1 cut(s)	692
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	668
BciT130I	CCWGG	4 cut(s)	122, 138, 644, 881
BcoDI	GTCTC	4 cut(s)	31, 77, 495, 903
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	3 cut(s)	309, 465, 843
BfoI	RGCGCY	1 cut(s)	630
BisI	GCNGC	1 cut(s)	681
BlsI	GCNGC	1 cut(s)	682
Bme1390I	CCNGG	4 cut(s)	122, 138, 644, 881
Bme18I	GGWCC	3 cut(s)	118, 377, 793
BmgT120I	GGNCC	4 cut(s)	118, 377, 654, 793
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	4 cut(s)	122, 138, 644, 881
BmsI	GCATC	3 cut(s)	549, 622, 658
BpiI	GAAGAC	2 cut(s)	395, 444
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpmI	CTGGAG	2 cut(s)	59, 851
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	3 cut(s)	188, 271, 272
BsaI	GGTCTC	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	918
Bsc4I	CCNNNNNNNGG	1 cut(s)	662
Bse118I	RCCGGY	1 cut(s)	918
Bse1I	ACTGG	4 cut(s)	51, 120, 501, 834
Bse3DI	GCAATG	1 cut(s)	455
BseBI	CCWGG	4 cut(s)	122, 138, 644, 881
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	1 cut(s)	662
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	4 cut(s)	51, 120, 501, 834
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	655
BshTI	ACCGGT	1 cut(s)	918
BsiHKAI	GWGCWC	2 cut(s)	545, 821
BsiSI	CCGG	1 cut(s)	919
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	1 cut(s)	662
BsmAI	GTCTC	4 cut(s)	31, 77, 495, 903
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	1 cut(s)	655
Bso31I	GGTCTC	1 cut(s)	31
Bsp119I	TTCGAA	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	545, 821
Bsp143I	GATC	2 cut(s)	320, 845
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	1 cut(s)	833
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	328
BspT104I	TTCGAA	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	918
BsrI	ACTGG	4 cut(s)	51, 120, 501, 834
BssAI	RCCGGY	1 cut(s)	918
BssMI	GATC	2 cut(s)	320, 845
BssSI	CACGAG	1 cut(s)	888
Bst2BI	CACGAG	1 cut(s)	888
Bst2UI	CCWGG	4 cut(s)	122, 138, 644, 881
Bst6I	CTCTTC	2 cut(s)	168, 748
BstBI	TTCGAA	1 cut(s)	533
BstDEI	CTNAG	2 cut(s)	820, 856
BstF5I	GGATG	1 cut(s)	639
BstFNI	CGCG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	630
BstHHI	GCGC	2 cut(s)	364, 629
BstKTI	GATC	2 cut(s)	323, 848
BstMAI	GTCTC	4 cut(s)	31, 77, 495, 903
BstMBI	GATC	2 cut(s)	320, 845
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNI	CCWGG	4 cut(s)	122, 138, 644, 881
BstNSI	RCATGY	3 cut(s)	374, 529, 622
BstSCI	CCNGG	4 cut(s)	120, 136, 642, 879
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	692
BstV2I	GAAGAC	2 cut(s)	395, 444
BstX2I	RGATCY	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	655
BtgZI	GCGATG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	639
BtsI	GCAGTG	1 cut(s)	970
BtsIMutI	CAGTG	1 cut(s)	970
CfoI	GCGC	2 cut(s)	364, 629
Cfr10I	RCCGGY	1 cut(s)	918
Cfr13I	GGNCC	4 cut(s)	118, 377, 654, 793
CseI	GACGC	2 cut(s)	20, 743
Csp6I	GTAC	2 cut(s)	312, 425
CspAI	ACCGGT	1 cut(s)	918
CviAII	CATG	5 cut(s)	85, 354, 371, 526, 619
CviQI	GTAC	2 cut(s)	312, 425
DdeI	CTNAG	2 cut(s)	820, 856
DpnI	GATC	2 cut(s)	322, 847
DpnII	GATC	2 cut(s)	320, 845
Eam1104I	CTCTTC	2 cut(s)	168, 748
EarI	CTCTTC	2 cut(s)	168, 748
Ecl136II	GAGCTC	2 cut(s)	543, 819
Eco24I	GRGCYC	2 cut(s)	545, 821
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	3 cut(s)	118, 377, 793
Eco47III	AGCGCT	1 cut(s)	628
Eco53kI	GAGCTC	2 cut(s)	543, 819
Eco57I	CTGAAG	1 cut(s)	175
EcoICRI	GAGCTC	2 cut(s)	543, 819
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	4 cut(s)	120, 136, 642, 879
EcoT22I	ATGCAT	1 cut(s)	436
EcoT38I	GRGCYC	2 cut(s)	545, 821
FaeI	CATG	5 cut(s)	88, 357, 374, 529, 622
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	5 cut(s)	84, 353, 370, 525, 618
Fnu4HI	GCNGC	1 cut(s)	681
FokI	GGATG	1 cut(s)	626
FriOI	GRGCYC	2 cut(s)	545, 821
Fsp4HI	GCNGC	1 cut(s)	681
FspBI	CTAG	3 cut(s)	309, 465, 843
GlaI	GCGC	2 cut(s)	363, 628
GluI	GCNGC	1 cut(s)	681
GsuI	CTGGAG	2 cut(s)	59, 851
HaeII	RGCGCY	1 cut(s)	630
HaeIII	GGCC	1 cut(s)	655
HapII	CCGG	1 cut(s)	919
HgaI	GACGC	2 cut(s)	20, 743
HhaI	GCGC	2 cut(s)	364, 629
Hin1II	CATG	5 cut(s)	88, 357, 374, 529, 622
Hin6I	GCGC	2 cut(s)	362, 627
HinP1I	GCGC	2 cut(s)	362, 627
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	8 cut(s)	178, 274, 535, 698, 722, 740, 769, 884
HpaII	CCGG	1 cut(s)	919
HphI	GGTGA	4 cut(s)	229, 274, 324, 840
Hpy188I	TCNGA	7 cut(s)	540, 558, 592, 768, 793, 823, 937
Hpy188III	TCNNGA	4 cut(s)	35, 182, 731, 890
HpyAV	CCTTC	2 cut(s)	862, 932
HpyCH4IV	ACGT	2 cut(s)	549, 763
HpyCH4V	TGCA	9 cut(s)	52, 283, 340, 434, 460, 472, 562, 635, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	2 cut(s)	820, 856
HpySE526I	ACGT	2 cut(s)	549, 763
Hsp92II	CATG	5 cut(s)	88, 357, 374, 529, 622
HspAI	GCGC	2 cut(s)	362, 627
Kzo9I	GATC	2 cut(s)	320, 845
LmnI	GCTCC	1 cut(s)	548
Lsp1109I	GCAGC	1 cut(s)	692
LweI	GCATC	3 cut(s)	549, 622, 658
MaeI	CTAG	3 cut(s)	309, 465, 843
MaeII	ACGT	2 cut(s)	549, 763
MalI	GATC	2 cut(s)	322, 847
MboI	GATC	2 cut(s)	320, 845
MboII	GAAGA	6 cut(s)	181, 185, 400, 444, 735, 965
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	2 cut(s)	545, 821
MluCI	AATT	3 cut(s)	185, 579, 777
MlyI	GAGTC	3 cut(s)	283, 707, 734
MmeI	TCCRAC	4 cut(s)	570, 577, 726, 903
MnlI	CCTC	5 cut(s)	163, 258, 504, 783, 797
Mph1103I	ATGCAT	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	3 cut(s)	206, 269, 483
MslI	CAYNNNNRTG	2 cut(s)	288, 467
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	1 cut(s)	919
MspR9I	CCNGG	4 cut(s)	122, 138, 644, 881
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	4 cut(s)	122, 138, 644, 881
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	677
NdeII	GATC	2 cut(s)	320, 845
NlaIII	CATG	5 cut(s)	88, 357, 374, 529, 622
NlaIV	GGNNCC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	436
NspI	RCATGY	3 cut(s)	374, 529, 622
NspV	TTCGAA	1 cut(s)	533
OliI	CACNNNNGTG	1 cut(s)	288
PciI	ACATGT	1 cut(s)	618
PctI	GAATGC	1 cut(s)	683
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	5 cut(s)	178, 535, 722, 769, 884
PfoI	TCCNGGA	2 cut(s)	642, 879
PinAI	ACCGGT	1 cut(s)	918
PkrI	GCNGC	1 cut(s)	682
PleI	GAGTC	3 cut(s)	282, 706, 734
PpsI	GAGTC	3 cut(s)	282, 706, 734
PscI	ACATGT	1 cut(s)	618
Psp124BI	GAGCTC	2 cut(s)	545, 821
Psp6I	CCWGG	4 cut(s)	120, 136, 642, 879
PspGI	CCWGG	4 cut(s)	120, 136, 642, 879
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	4 cut(s)	118, 377, 654, 793
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	2 cut(s)	313, 426
RsaNI	GTAC	2 cut(s)	312, 425
RseI	CAYNNNNRTG	2 cut(s)	288, 467
SacI	GAGCTC	2 cut(s)	545, 821
SaqAI	TTAA	3 cut(s)	206, 269, 483
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	2 cut(s)	320, 845
Sau96I	GGNCC	4 cut(s)	118, 377, 654, 793
SchI	GAGTC	3 cut(s)	283, 707, 734
ScrFI	CCNGG	4 cut(s)	122, 138, 644, 881
SduI	GDGCHC	2 cut(s)	545, 821
SfaNI	GCATC	3 cut(s)	549, 622, 658
SfuI	TTCGAA	1 cut(s)	533
SinI	GGWCC	3 cut(s)	118, 377, 793
SmiMI	CAYNNNNRTG	2 cut(s)	288, 467
SmlI	CTYRAG	3 cut(s)	167, 251, 286
SmoI	CTYRAG	3 cut(s)	167, 251, 286
SpeI	ACTAGT	1 cut(s)	464
Sse9I	AATT	3 cut(s)	185, 579, 777
SspMI	CTAG	3 cut(s)	309, 465, 843
SstI	GAGCTC	2 cut(s)	545, 821
StyD4I	CCNGG	4 cut(s)	120, 136, 642, 879
TaiI	ACGT	2 cut(s)	552, 766
TaqI	TCGA	4 cut(s)	5, 63, 533, 775
TasI	AATT	3 cut(s)	185, 579, 777
TfiI	GAWTC	5 cut(s)	178, 535, 722, 769, 884
Tru1I	TTAA	3 cut(s)	206, 269, 483
Tru9I	TTAA	3 cut(s)	206, 269, 483
TscAI	CASTG	1 cut(s)	970
TseI	GCWGC	1 cut(s)	680
TspDTI	ATGAA	5 cut(s)	101, 444, 735, 735, 966
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	970
VpaK11BI	GGWCC	3 cut(s)	118, 377, 793
XapI	RAATTY	2 cut(s)	185, 777
XceI	RCATGY	3 cut(s)	374, 529, 622
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	3 cut(s)	309, 465, 843
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.