Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003012

Physical Location & Seq

Genomic Coordinates Reverse (-)

30763293 .. 30778974

Gene Structure 15682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCTGCTCTTCCTTCACCGGTCGATATCTCTCTCATCTGACCTCGAATCGAACAACTTTACGATTCTAAATACTATCCCTCTCAAATATTCATCCCTAAGAAGTAGAGCATGGCAGATAATAATTGGTCATACACCCATAATGAGTGAACTCAATAGGCAAAGCGAAGAGGGGAGAGTACTGGTCATACACTTGTGCGTATCAAGCATAGTTGGGGAGCTGGTTACTTATACGTCCGCCAACGCGCAAGTAGAGCAAAATGGTATACGTGCACGTAATCTAAGAACTGATCATATTATTGTAGTATCGTACCGAGCCGCTTTGAAGGAAGCATCTACGTCTCCCGGGCTTCAAAAGCCCTCAAGAACCATCGTTGGAGGTGGCCGAAATCGGGAGTTCGATGAAGCCCCGAAGCAACGCCACCACCAATCTTCTCGCCTTGCTGCACCTTCTACAGCCCAAATCGTGCAACAAGGCTACCATAGACTTGGAGAGGGAGAAGAGACGAAGAGATTGAGACCGGTGTTCGATATATTGGAGAGCTATCCTCGATCACCTTTCTTGGCGACCGATAATGAAAACTTCATGGAGTCTCGTGAAAGAGAACATCAAGGAGACAATAACAGGCTGGACACCATTTCGAAGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

216

Amino Acids

24.39

Weight (kDa)

9.16

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090
fragaria_vesca	FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280
malus_domestica	MD00G1088600.v1.1 MD12G1093600.v1.1
prunus_persica	Prupe.7G042200_v2.0.a1 Prupe.7G042200_v2.0.a1
pyrus_communis	pycom12g07910 pycom14g07610
rosa_chinensis	RchiOBHm_Chr2g0125341
rosa_laevigata	RLG00000018855 RLG00000018856 RLG00000018857
rosa_multiflora	Rmu_sc0002631.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118100 Rroxscaffold_2G00133650 Rroxscaffold_5G00353180
rosa_rugosa	Rorug02G0256800
rosa_samantha	Rh2AG315000 Rh2BG323100 Rh2CG305300 Rh2DG341600
rosa_wichuraiana	Rw2G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AccII	CGCG	1 cut(s)	245
AciI	CCGC	2 cut(s)	237, 318
AcoI	YGGCCR	1 cut(s)	382
AfaI	GTAC	2 cut(s)	180, 311
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgeI	ACCGGT	2 cut(s)	18, 520
AgsI	TTSAA	2 cut(s)	325, 353
AluBI	AGCT	2 cut(s)	220, 543
AluI	AGCT	2 cut(s)	220, 543
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	5 cut(s)	345, 497, 511, 597, 609
Alw44I	GTGCAC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	382
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	2 cut(s)	4, 443
AsiGI	ACCGGT	2 cut(s)	18, 520
AspLEI	GCGC	1 cut(s)	247
AsuC2I	CCSGG	2 cut(s)	345, 346
AsuHPI	GGTGA	2 cut(s)	8, 546
AsuII	TTCGAA	1 cut(s)	641
AvaI	CYCGRG	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	377
BclI	TGATCA	1 cut(s)	289
BcnI	CCSGG	2 cut(s)	345, 346
BcoDI	GTCTC	5 cut(s)	345, 497, 511, 597, 609
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	3 cut(s)	5, 318, 444
BlsI	GCNGC	3 cut(s)	6, 319, 445
BmcAI	AGTACT	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	345, 346
BmeT110I	CYCGRG	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	345, 346
BmsI	GCATC	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
Bpu14I	TTCGAA	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	346
BpuMI	CCSGG	2 cut(s)	345, 346
BsaAI	YACGTR	2 cut(s)	269, 275
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	344
BsaWI	WCCGGW	2 cut(s)	18, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse118I	RCCGGY	2 cut(s)	18, 520
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	2 cut(s)	23, 570
BshFI	GGCC	1 cut(s)	384
BshTI	ACCGGT	2 cut(s)	18, 520
BsiEI	CGRYCG	2 cut(s)	23, 570
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	3 cut(s)	19, 345, 521
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	5 cut(s)	345, 497, 511, 597, 609
BsmBI	CGTCTC	2 cut(s)	345, 497
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	511
BsoBI	CYCGRG	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	289, 551
BspACI	CCGC	2 cut(s)	237, 318
BspANI	GGCC	1 cut(s)	384
BspFNI	CGCG	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	641
BspTNI	GGTCTC	1 cut(s)	511
BsrFI	RCCGGY	2 cut(s)	18, 520
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	2 cut(s)	18, 520
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	2 cut(s)	289, 551
BssNAI	GTATAC	1 cut(s)	266
BssSI	CACGAG	1 cut(s)	594
Bst1107I	GTATAC	1 cut(s)	266
Bst2BI	CACGAG	1 cut(s)	594
Bst6I	CTCTTC	4 cut(s)	14, 162, 495, 503
BstBAI	YACGTR	2 cut(s)	269, 275
BstBI	TTCGAA	1 cut(s)	641
BstDEI	CTNAG	2 cut(s)	98, 281
BstF5I	GGATG	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	2 cut(s)	292, 554
BstMAI	GTCTC	5 cut(s)	345, 497, 511, 597, 609
BstMBI	GATC	2 cut(s)	289, 551
BstMCI	CGRYCG	2 cut(s)	23, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 253, 355
BstSCI	CCNGG	2 cut(s)	343, 344
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstZ17I	GTATAC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	92
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	2 cut(s)	18, 520
Cfr9I	CCCGGG	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	179, 310
CspAI	ACCGGT	2 cut(s)	18, 520
CviAII	CATG	2 cut(s)	111, 586
CviQI	GTAC	2 cut(s)	179, 310
DdeI	CTNAG	2 cut(s)	98, 281
DpnI	GATC	2 cut(s)	291, 553
DpnII	GATC	2 cut(s)	289, 551
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	4 cut(s)	14, 162, 495, 503
EarI	CTCTTC	4 cut(s)	14, 162, 495, 503
EciI	GGCGGA	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	27
Esp3I	CGTCTC	2 cut(s)	345, 497
FaeI	CATG	2 cut(s)	114, 589
FatI	CATG	2 cut(s)	110, 585
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	5, 318, 444
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	5, 318, 444
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	3 cut(s)	5, 318, 444
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	3 cut(s)	19, 345, 521
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	114, 589
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	3 cut(s)	47, 64, 590
HpaII	CCGG	3 cut(s)	19, 345, 521
HphI	GGTGA	2 cut(s)	8, 546
Hpy166II	GTNNAC	3 cut(s)	149, 266, 272
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	3 cut(s)	363, 392, 596
Hpy8I	GTNNAC	3 cut(s)	149, 266, 272
HpyAV	CCTTC	4 cut(s)	23, 319, 459, 637
HpyCH4IV	ACGT	4 cut(s)	233, 268, 274, 338
HpyCH4V	TGCA	3 cut(s)	272, 446, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 253, 355
HpyF3I	CTNAG	2 cut(s)	98, 281
HpySE526I	ACGT	4 cut(s)	233, 268, 274, 338
Hsp92II	CATG	2 cut(s)	114, 589
HspAI	GCGC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	289, 551
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	7 cut(s)	32, 167, 206, 358, 534, 610, 614
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	341
MaeII	ACGT	4 cut(s)	233, 268, 274, 338
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	291, 553
MboI	GATC	2 cut(s)	289, 551
MboII	GAAGA	4 cut(s)	179, 423, 512, 520
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	7 cut(s)	53, 90, 163, 370, 371, 487, 558
MspI	CCGG	3 cut(s)	19, 345, 521
MspR9I	CCNGG	2 cut(s)	345, 346
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	204, 253, 355
NciI	CCSGG	2 cut(s)	345, 346
NdeII	GATC	2 cut(s)	289, 551
NlaIII	CATG	2 cut(s)	114, 589
NspV	TTCGAA	1 cut(s)	641
PciSI	GCTCTTC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	47, 64
PinAI	ACCGGT	2 cut(s)	18, 520
PkrI	GCNGC	3 cut(s)	6, 319, 445
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Ppu21I	YACGTR	2 cut(s)	269, 275
RsaI	GTAC	2 cut(s)	180, 311
RsaNI	GTAC	2 cut(s)	179, 310
SapI	GCTCTTC	1 cut(s)	14
SatI	GCNGC	3 cut(s)	5, 318, 444
Sau3AI	GATC	2 cut(s)	289, 551
ScaI	AGTACT	1 cut(s)	180
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	2 cut(s)	345, 346
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	1 cut(s)	341
SfcI	CTRYAG	1 cut(s)	453
SfuI	TTCGAA	1 cut(s)	641
SmaI	CCCGGG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	2 cut(s)	237, 318
SspI	AATATT	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	343, 344
TaiI	ACGT	4 cut(s)	236, 271, 277, 341
TaqI	TCGA	7 cut(s)	23, 45, 50, 399, 528, 550, 641
TaqII	GACCGA	1 cut(s)	584
TasI	AATT	1 cut(s)	123
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	47, 64
TseI	GCWGC	2 cut(s)	4, 443
TspDTI	ATGAA	4 cut(s)	81, 417, 574, 591
TspMI	CCCGGG	1 cut(s)	344
VneI	GTGCAC	1 cut(s)	270
XmaI	CCCGGG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	265
ZrmI	AGTACT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.