Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003012

Physical Location & Seq

Genomic Coordinates Reverse (-)

8638431 .. 8642468

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCTAGTGGATCGGTTAGACGGGTCTCACGTGAAGATATACAACTGGTGCAAAACCTTATCGAGCGATGTCTCCAGCTTTACATGAACCAGAAGGAAGTGGTAGATACTTTACTGGATCAGGCAAAAATAGAGCCTGGTTTCACAGAACTTGTTTGGCAGAAACTTGAGGAAGAGAATCGGGAATTCTTCAGGGCCTATTATTTAAGATTGATGGTGAAGCACCAAATAATACAATATAACAACTTGCTTAAGCAACAGGTGGAATTGATGAGTCAGTTACACTCAAGTGGAGTCACTTCAATATCTAGTTCCAATGGATCTCACATTTCATCAATGCGCCAAAACTCAACATGCTACGCACCAGAGCATGTAGGAACAACGCTGAAGACAGAAAATATACACCACCAAGTTGGTTCCTGCCTACCTAATGCATTTACTAATGGTGGATCTTCACTGCACACCAGTATGCACAATGCTGGTAAAATGTCTGCTCATACCAGTAGGATTGATGTCCAACCAAACATGCTTTCGAACCAGATCTCCAACATAGGTCTGATGCATGGAATGAATGGGGGAATTGTCAAATCAGAAGTTGGATATTCAGGCAGTTCGTACATGTTTAGTGCTGATGGAAACCTCCTGGAAACCCGGCCCGCTATTGGAGATGCTTCTGTTGCAGCATTCAATAGCGTAGAGTCCAATTCACAGTCCCTAAATGAATCACTGCTTGATGCAGACAGTTCATCATTTGGTCTTTTAGGTCAGATTCCTCGAATTTTGAGCTTTTCAGATCTGGCAACTGACTTTTCTCAGAGTTCAGACATACTGGAGAGCTATCCTAGATCACCCTTCTTGGCTACAGATAATAACAACTTCCTGGATTCTCGTGACAGAGAACATCAAGGAGACAATAACAGATTGGACACCGTCTCAGAAGGTGTAAGTTATGAAGATTTTGGCAGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

324

Amino Acids

35.75

Weight (kDa)

5.12

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT3G10250 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090 AT5G04090
fragaria_vesca	FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280 FvH4_6g25280
malus_domestica	MD00G1088600.v1.1 MD12G1093600.v1.1
prunus_persica	Prupe.7G042200_v2.0.a1 Prupe.7G042200_v2.0.a1
pyrus_communis	pycom12g07910 pycom14g07610
rosa_chinensis	RchiOBHm_Chr2g0125341
rosa_laevigata	RLG00000018855 RLG00000018856 RLG00000018857
rosa_multiflora	Rmu_sc0002631.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118100 Rroxscaffold_2G00133650 Rroxscaffold_5G00353180
rosa_rugosa	Rorug02G0256800
rosa_samantha	Rh2AG315000 Rh2BG323100 Rh2CG305300 Rh2DG341600
rosa_wichuraiana	Rw2G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	657
AclWI	GGATC	4 cut(s)	19, 126, 328, 457
AcsI	RAATTY	2 cut(s)	185, 777
AcuI	CTGAAG	2 cut(s)	175, 407
AcvI	CACGTG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	1 cut(s)	662
AflII	CTTAAG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	2 cut(s)	303, 688
AjnI	CCWGG	3 cut(s)	136, 642, 879
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AleI	CACNNNNGTG	1 cut(s)	288
AloI	GAACNNNNNNTCC	2 cut(s)	527, 559
AluBI	AGCT	3 cut(s)	79, 786, 837
AluI	AGCT	3 cut(s)	79, 786, 837
Alw26I	GTCTC	4 cut(s)	31, 77, 903, 937
AlwI	GGATC	4 cut(s)	19, 126, 328, 457
AoxI	GGCC	2 cut(s)	195, 653
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	2 cut(s)	185, 777
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	195, 654
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	2 cut(s)	229, 840
AsuII	TTCGAA	1 cut(s)	533
BauI	CACGAG	1 cut(s)	888
BbrPI	CACGTG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	692
BccI	CCATC	2 cut(s)	208, 626
BciT130I	CCWGG	3 cut(s)	138, 644, 881
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	4 cut(s)	31, 77, 903, 937
BfaI	CTAG	3 cut(s)	6, 309, 843
BfmI	CTRYAG	1 cut(s)	861
BfrI	CTTAAG	1 cut(s)	251
BglII	AGATCT	2 cut(s)	540, 793
BisI	GCNGC	1 cut(s)	681
BlsI	GCNGC	1 cut(s)	682
Bme1390I	CCNGG	4 cut(s)	138, 644, 652, 881
BmgT120I	GGNCC	2 cut(s)	195, 654
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	4 cut(s)	138, 644, 652, 881
BmsI	GCATC	3 cut(s)	549, 658, 724
BpiI	GAAGAC	1 cut(s)	395
BpmI	CTGGAG	2 cut(s)	59, 851
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	188, 271
BpuMI	CCSGG	1 cut(s)	652
BsaAI	YACGTR	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	662
Bse1I	ACTGG	5 cut(s)	51, 120, 465, 501, 834
BseBI	CCWGG	3 cut(s)	138, 644, 881
BseLI	CCNNNNNNNGG	1 cut(s)	662
BseMII	CTCAG	2 cut(s)	827, 948
BseNI	ACTGG	5 cut(s)	51, 120, 465, 501, 834
BseXI	GCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	443
BshFI	GGCC	2 cut(s)	197, 655
BsiSI	CCGG	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	1 cut(s)	662
BsmAI	GTCTC	4 cut(s)	31, 77, 903, 937
BsmBI	CGTCTC	1 cut(s)	937
BsmFI	GGGAC	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	2 cut(s)	197, 655
Bso31I	GGTCTC	1 cut(s)	31
Bsp119I	TTCGAA	1 cut(s)	533
Bsp143I	GATC	7 cut(s)	11, 118, 320, 449, 540, 793, 845
BspACI	CCGC	1 cut(s)	657
BspANI	GGCC	2 cut(s)	197, 655
BspCNI	CTCAG	2 cut(s)	826, 947
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	4 cut(s)	19, 126, 328, 457
BspT104I	TTCGAA	1 cut(s)	533
BspTI	CTTAAG	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	31
BsrI	ACTGG	5 cut(s)	51, 120, 465, 501, 834
BssMI	GATC	7 cut(s)	11, 118, 320, 449, 540, 793, 845
BssSI	CACGAG	1 cut(s)	888
Bst2BI	CACGAG	1 cut(s)	888
Bst2UI	CCWGG	3 cut(s)	138, 644, 881
Bst4CI	ACNGT	3 cut(s)	711, 743, 931
Bst6I	CTCTTC	1 cut(s)	168
BstAFI	CTTAAG	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	2 cut(s)	813, 934
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	7 cut(s)	14, 121, 323, 452, 543, 796, 848
BstMAI	GTCTC	4 cut(s)	31, 77, 903, 937
BstMBI	GATC	7 cut(s)	11, 118, 320, 449, 540, 793, 845
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNI	CCWGG	3 cut(s)	138, 644, 881
BstNSI	RCATGY	4 cut(s)	357, 374, 529, 622
BstSCI	CCNGG	4 cut(s)	136, 642, 650, 879
BstSFI	CTRYAG	1 cut(s)	861
BstV1I	GCAGC	1 cut(s)	692
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	4 cut(s)	320, 449, 540, 793
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	4 cut(s)	320, 449, 540, 793
BsuRI	GGCC	2 cut(s)	197, 655
BtgZI	GCGATG	1 cut(s)	82
BtsI	GCAGTG	3 cut(s)	455, 725, 970
BtsIMutI	CAGTG	3 cut(s)	455, 725, 970
Cac8I	GCNNGC	1 cut(s)	657
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	195, 654
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	6 cut(s)	85, 354, 371, 526, 563, 619
CviJI	RGCY	7 cut(s)	79, 136, 197, 655, 786, 837, 860
CviKI_1	RGCY	7 cut(s)	79, 136, 197, 655, 786, 837, 860
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	2 cut(s)	813, 934
DpnI	GATC	7 cut(s)	13, 120, 322, 451, 542, 795, 847
DpnII	GATC	7 cut(s)	11, 118, 320, 449, 540, 793, 845
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	175, 407
Eco72I	CACGTG	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	3 cut(s)	136, 642, 879
EcoT22I	ATGCAT	2 cut(s)	436, 564
Esp3I	CGTCTC	1 cut(s)	937
FaeI	CATG	6 cut(s)	88, 357, 374, 529, 566, 622
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	6 cut(s)	84, 353, 370, 525, 562, 618
FauI	CCCGC	1 cut(s)	664
Fnu4HI	GCNGC	1 cut(s)	681
Fsp4HI	GCNGC	1 cut(s)	681
FspBI	CTAG	3 cut(s)	6, 309, 843
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	681
GsuI	CTGGAG	2 cut(s)	59, 851
HaeIII	GGCC	2 cut(s)	197, 655
HapII	CCGG	1 cut(s)	652
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	6 cut(s)	88, 357, 374, 529, 566, 622
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	7 cut(s)	178, 274, 294, 698, 722, 769, 884
HpaII	CCGG	1 cut(s)	652
HphI	GGTGA	2 cut(s)	229, 840
Hpy188I	TCNGA	7 cut(s)	558, 592, 768, 793, 816, 823, 937
Hpy188III	TCNNGA	2 cut(s)	182, 890
HpyAV	CCTTC	3 cut(s)	88, 862, 932
HpyCH4III	ACNGT	3 cut(s)	711, 743, 931
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	7 cut(s)	52, 434, 460, 472, 562, 680, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	2 cut(s)	813, 934
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	6 cut(s)	88, 357, 374, 529, 566, 622
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	7 cut(s)	11, 118, 320, 449, 540, 793, 845
Lsp1109I	GCAGC	1 cut(s)	692
LweI	GCATC	3 cut(s)	549, 658, 724
MaeI	CTAG	3 cut(s)	6, 309, 843
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	3 cut(s)	279, 295, 890
MalI	GATC	7 cut(s)	13, 120, 322, 451, 542, 795, 847
MboI	GATC	7 cut(s)	11, 118, 320, 449, 540, 793, 845
MboII	GAAGA	6 cut(s)	47, 181, 185, 400, 444, 965
MflI	RGATCY	4 cut(s)	320, 449, 540, 793
MluCI	AATT	5 cut(s)	185, 266, 579, 703, 777
MlyI	GAGTC	3 cut(s)	283, 303, 707
MmeI	TCCRAC	3 cut(s)	541, 570, 577
MnlI	CCTC	3 cut(s)	163, 650, 783
Mph1103I	ATGCAT	2 cut(s)	436, 564
MseI	TTAA	2 cut(s)	206, 252
MslI	CAYNNNNRTG	2 cut(s)	288, 467
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	1 cut(s)	652
MspR9I	CCNGG	4 cut(s)	138, 644, 652, 881
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	3 cut(s)	138, 644, 881
MwoI	GCNNNNNNNGC	1 cut(s)	677
NciI	CCSGG	1 cut(s)	652
NdeII	GATC	7 cut(s)	11, 118, 320, 449, 540, 793, 845
NlaIII	CATG	6 cut(s)	88, 357, 374, 529, 566, 622
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	2 cut(s)	295, 890
NsiI	ATGCAT	2 cut(s)	436, 564
NspI	RCATGY	4 cut(s)	357, 374, 529, 622
NspV	TTCGAA	1 cut(s)	533
OliI	CACNNNNGTG	1 cut(s)	288
PciI	ACATGT	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	4 cut(s)	178, 722, 769, 884
PflFI	GACNNNGTC	1 cut(s)	929
PfoI	TCCNGGA	2 cut(s)	642, 879
PkrI	GCNGC	1 cut(s)	682
PleI	GAGTC	3 cut(s)	282, 302, 706
PmaCI	CACGTG	1 cut(s)	32
PmlI	CACGTG	1 cut(s)	32
PpsI	GAGTC	3 cut(s)	282, 302, 706
Ppu21I	YACGTR	1 cut(s)	32
PscI	ACATGT	1 cut(s)	618
Psp6I	CCWGG	3 cut(s)	136, 642, 879
PspCI	CACGTG	1 cut(s)	32
PspGI	CCWGG	3 cut(s)	136, 642, 879
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	195, 654
PsuI	RGATCY	4 cut(s)	320, 449, 540, 793
PsyI	GACNNNGTC	1 cut(s)	929
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	2 cut(s)	288, 467
SaqAI	TTAA	2 cut(s)	206, 252
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	7 cut(s)	11, 118, 320, 449, 540, 793, 845
Sau96I	GGNCC	2 cut(s)	195, 654
SchI	GAGTC	3 cut(s)	283, 303, 707
ScrFI	CCNGG	4 cut(s)	138, 644, 652, 881
SfaNI	GCATC	3 cut(s)	549, 658, 724
SfcI	CTRYAG	1 cut(s)	861
SfuI	TTCGAA	1 cut(s)	533
SmiMI	CAYNNNNRTG	2 cut(s)	288, 467
SmlI	CTYRAG	3 cut(s)	167, 251, 286
SmoI	CTYRAG	3 cut(s)	167, 251, 286
Sse9I	AATT	5 cut(s)	185, 266, 579, 703, 777
SsiI	CCGC	1 cut(s)	657
SspMI	CTAG	3 cut(s)	6, 309, 843
StyD4I	CCNGG	4 cut(s)	136, 642, 650, 879
TaaI	ACNGT	3 cut(s)	711, 743, 931
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	3 cut(s)	63, 533, 775
TasI	AATT	5 cut(s)	185, 266, 579, 703, 777
TfiI	GAWTC	4 cut(s)	178, 722, 769, 884
Tru1I	TTAA	2 cut(s)	206, 252
Tru9I	TTAA	2 cut(s)	206, 252
TscAI	CASTG	3 cut(s)	462, 732, 970
TseFI	GTSAC	2 cut(s)	295, 890
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	2 cut(s)	295, 890
TspDTI	ATGAA	6 cut(s)	101, 321, 584, 735, 735, 966
TspRI	CASTG	3 cut(s)	462, 732, 970
Tth111I	GACNNNGTC	1 cut(s)	929
Vha464I	CTTAAG	1 cut(s)	251
XapI	RAATTY	2 cut(s)	185, 777
XceI	RCATGY	4 cut(s)	357, 374, 529, 622
XspI	CTAG	3 cut(s)	6, 309, 843
Zsp2I	ATGCAT	2 cut(s)	436, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.