Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Reverse (-)

1250248 .. 1253953

Gene Structure 3706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGTCTACTGAGTCATATGCGGCAGGTTCACCGGAAGAGCTGGCTAAGAGATCCCCTGAACCGCATGATTCTTCCGAAGCTGATTCTGCTGAGAAGCCAACACACATTCGGTTTCTTGTATCCAATGCGGCAGCTGGTTCCGTCATTGGGAAAGGTGGCTCGACCATCACTGAATTTCAGGCAAAGTCTGGGGCAAGGATTCAGCTTTCACGTAATCAAGAGTTTTTCCCGGGGACGACTGACAGAATTATTATGATATCGGGATCAATCAAAGAAGTTGTCAATGGACTGGAACTTATCCTTGATAAATTGCACAGTGAGCTTCATGCTGAAGATGGTAATGAGGTTGAGCCTAGGAGAAGAATTAGACTTGTGGTTCCTAACAGTTCTTGTGGAGGTATAATCGGAAAAGGAGGGGCCACCATCAAGTCATTCATTGAGGAATCTAAAGCTGGTATTAAGATATCCCCTCTGGATAATACCTTTTATGGGTTGAGCGATAGGTTAGTGACATTATCTGGGACCTTCGAGGAGCAGATGCGGGCAATCGATTTGATTTTGGCTAAGCTTACTGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGCGGGATACAATTCGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGGAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAGCATATAGGATTGGTGCTTGGACGTGGAGGAAGAAACATCATGGAAATCACTCAGATGACTGGTGCCCGAATTAAAATATCAGACCGAGGTGATTTTATGTCTGGAACCACTGATAGGAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAGCTGAGACAATGATAAAACAGAAAGTTGATTCAGCCACAGAGAGAACCACCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

313

Amino Acids

33.82

Weight (kDa)

5.7

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	37 - 102	4.7e-15	KH domain
KH_1	PF00013	123 - 188	2.5e-14	KH domain
KH_1	PF00013	256 - 323	1.8e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	6 cut(s)	23, 65, 131, 544, 626, 722
AclWI	GGATC	2 cut(s)	48, 274
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	700
AfiI	CCNNNNNNNGG	3 cut(s)	150, 492, 843
AjiI	CACGTC	1 cut(s)	752
AluBI	AGCT	9 cut(s)	43, 83, 137, 208, 325, 455, 571, 695, 887
AluI	AGCT	9 cut(s)	43, 83, 137, 208, 325, 455, 571, 695, 887
Alw26I	GTCTC	1 cut(s)	884
AlwI	GGATC	2 cut(s)	48, 274
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	2 cut(s)	420, 863
ApeKI	GCWGC	2 cut(s)	134, 623
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
AspA2I	CCTAGG	1 cut(s)	356
AspS9I	GGNCC	3 cut(s)	420, 525, 863
AsuC2I	CCSGG	2 cut(s)	233, 234
AsuHPI	GGTGA	3 cut(s)	24, 718, 830
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	525
AvrII	CCTAGG	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	796
BanI	GGYRCC	1 cut(s)	791
BbvI	GCAGC	2 cut(s)	146, 635
BccI	CCATC	3 cut(s)	176, 332, 434
BciVI	GTATCC	2 cut(s)	133, 623
BcnI	CCSGG	2 cut(s)	233, 234
BcoDI	GTCTC	1 cut(s)	884
BfaI	CTAG	2 cut(s)	357, 696
BfuAI	ACCTGC	1 cut(s)	17
BfuI	GTATCC	2 cut(s)	133, 623
BisI	GCNGC	4 cut(s)	24, 132, 135, 624
BlnI	CCTAGG	1 cut(s)	356
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	4 cut(s)	25, 133, 136, 625
Bme1390I	CCNGG	2 cut(s)	233, 234
Bme18I	GGWCC	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	752
BmgT120I	GGNCC	3 cut(s)	420, 525, 863
BmiI	GGNNCC	6 cut(s)	142, 381, 421, 526, 793, 835
BmrFI	CCNGG	2 cut(s)	233, 234
BmsI	GCATC	1 cut(s)	531
BpmI	CTGGAG	1 cut(s)	684
Bpu1102I	GCTNAGC	1 cut(s)	567
BpuMI	CCSGG	2 cut(s)	233, 234
Bsa29I	ATCGAT	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	215
BsaJI	CCNNGG	5 cut(s)	232, 233, 356, 702, 814
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 492, 843
Bse1I	ACTGG	2 cut(s)	297, 793
BseCI	ATCGAT	1 cut(s)	552
BseDI	CCNNGG	5 cut(s)	232, 233, 356, 702, 814
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	3 cut(s)	150, 492, 843
BseMII	CTCAG	4 cut(s)	84, 567, 794, 879
BseNI	ACTGG	2 cut(s)	297, 793
BseRI	GAGGAG	1 cut(s)	548
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	2 cut(s)	146, 635
BshFI	GGCC	2 cut(s)	422, 865
BshNI	GGYRCC	1 cut(s)	791
BshVI	ATCGAT	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	35, 233
BslFI	GGGAC	2 cut(s)	250, 538
BslI	CCNNNNNNNGG	3 cut(s)	150, 492, 843
BsmAI	GTCTC	1 cut(s)	884
BsmFI	GGGAC	2 cut(s)	250, 538
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	2 cut(s)	422, 865
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	796
Bsp143I	GATC	3 cut(s)	53, 266, 583
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	6 cut(s)	23, 65, 131, 544, 626, 722
BspANI	GGCC	2 cut(s)	422, 865
BspCNI	CTCAG	5 cut(s)	4, 85, 568, 793, 880
BspDI	ATCGAT	1 cut(s)	552
BspLI	GGNNCC	6 cut(s)	142, 381, 421, 526, 793, 835
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	48, 274
BspQI	GCTCTTC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	791
BsrI	ACTGG	2 cut(s)	297, 793
BssECI	CCNNGG	5 cut(s)	232, 233, 356, 702, 814
BssMI	GATC	3 cut(s)	53, 266, 583
BssT1I	CCWWGG	1 cut(s)	356
Bst4CI	ACNGT	4 cut(s)	320, 389, 659, 706
Bst6I	CTCTTC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	45, 546
BstDEI	CTNAG	7 cut(s)	12, 48, 93, 567, 576, 780, 888
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	730
BstKTI	GATC	3 cut(s)	56, 269, 586
BstMAI	GTCTC	1 cut(s)	884
BstMBI	GATC	3 cut(s)	53, 266, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 322
BstSCI	CCNGG	2 cut(s)	231, 232
BstSLI	GKGCMC	1 cut(s)	796
BstV1I	GCAGC	2 cut(s)	146, 635
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	552
BsuI	GTATCC	2 cut(s)	133, 623
BsuRI	GGCC	2 cut(s)	422, 865
BsuTUI	ATCGAT	1 cut(s)	552
BtgI	CCRYGG	1 cut(s)	702
BtrI	CACGTC	1 cut(s)	752
BtsCI	GGATG	1 cut(s)	730
BtsIMutI	CAGTG	3 cut(s)	171, 325, 837
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	45, 546
Cfr13I	GGNCC	3 cut(s)	420, 525, 863
Cfr9I	CCCGGG	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	552
Csp6I	GTAC	1 cut(s)	699
CviAII	CATG	3 cut(s)	68, 329, 769
CviQI	GTAC	1 cut(s)	699
DdeI	CTNAG	7 cut(s)	12, 48, 93, 567, 576, 780, 888
DpnI	GATC	3 cut(s)	55, 268, 585
DpnII	GATC	3 cut(s)	53, 266, 583
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	356
Eco32I	GATATC	2 cut(s)	261, 468
Eco47I	GGWCC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	525
EcoRV	GATATC	2 cut(s)	261, 468
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	3 cut(s)	71, 332, 772
FaqI	GGGAC	2 cut(s)	250, 538
FatI	CATG	3 cut(s)	67, 328, 768
FauI	CCCGC	2 cut(s)	537, 619
FauNDI	CATATG	2 cut(s)	19, 619
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	4 cut(s)	24, 132, 135, 624
FokI	GGATG	1 cut(s)	737
Fsp4HI	GCNGC	4 cut(s)	24, 132, 135, 624
FspBI	CTAG	2 cut(s)	357, 696
GluI	GCNGC	4 cut(s)	24, 132, 135, 624
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	422, 865
HapII	CCGG	2 cut(s)	35, 233
Hin1II	CATG	3 cut(s)	71, 332, 772
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	7 cut(s)	5, 14, 71, 86, 202, 446, 914
HpaI	GTTAAC	1 cut(s)	643
HpaII	CCGG	2 cut(s)	35, 233
HphI	GGTGA	3 cut(s)	24, 718, 830
Hpy166II	GTNNAC	3 cut(s)	9, 32, 643
Hpy188I	TCNGA	4 cut(s)	79, 410, 783, 811
Hpy188III	TCNNGA	5 cut(s)	221, 264, 476, 663, 831
Hpy8I	GTNNAC	3 cut(s)	9, 32, 643
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	4 cut(s)	320, 389, 659, 706
HpyCH4IV	ACGT	2 cut(s)	214, 751
HpyCH4V	TGCA	3 cut(s)	316, 604, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 322
HpyF3I	CTNAG	7 cut(s)	12, 48, 93, 567, 576, 780, 888
HpySE526I	ACGT	2 cut(s)	214, 751
Hsp92II	CATG	3 cut(s)	71, 332, 772
KspAI	GTTAAC	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	53, 266, 583
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	146, 635
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	2 cut(s)	357, 696
MaeII	ACGT	2 cut(s)	214, 751
MaeIII	GTNAC	2 cut(s)	511, 706
MalI	GATC	3 cut(s)	55, 268, 585
MboI	GATC	3 cut(s)	53, 266, 583
MboII	GAAGA	6 cut(s)	50, 66, 347, 375, 701, 771
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	796
MluCI	AATT	7 cut(s)	176, 249, 311, 366, 634, 711, 798
MlyI	GAGTC	2 cut(s)	14, 23
MmeI	TCCRAC	1 cut(s)	904
MseI	TTAA	3 cut(s)	462, 642, 801
MslI	CAYNNNNRTG	1 cut(s)	782
MspA1I	CMGCKG	2 cut(s)	137, 626
MspI	CCGG	2 cut(s)	35, 233
MspR9I	CCNGG	2 cut(s)	233, 234
MunI	CAATTG	1 cut(s)	711
Mva1269I	GAATGC	1 cut(s)	604
MwoI	GCNNNNNNNGC	2 cut(s)	89, 322
NciI	CCSGG	2 cut(s)	233, 234
NdeI	CATATG	2 cut(s)	19, 619
NdeII	GATC	3 cut(s)	53, 266, 583
NlaIII	CATG	3 cut(s)	71, 332, 772
NlaIV	GGNNCC	6 cut(s)	142, 381, 421, 526, 793, 835
NmuCI	GTSAC	2 cut(s)	511, 706
PciSI	GCTCTTC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	604
PfeI	GAWTC	5 cut(s)	71, 86, 202, 446, 914
PkrI	GCNGC	4 cut(s)	25, 133, 136, 625
PleI	GAGTC	2 cut(s)	13, 22
PpsI	GAGTC	2 cut(s)	13, 22
Ppu21I	YACGTR	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	525
PspN4I	GGNNCC	6 cut(s)	142, 381, 421, 526, 793, 835
PspPI	GGNCC	3 cut(s)	420, 525, 863
PspPPI	RGGWCCY	1 cut(s)	525
PsuI	RGATCY	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
RseI	CAYNNNNRTG	1 cut(s)	782
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	462, 642, 801
SatI	GCNGC	4 cut(s)	24, 132, 135, 624
Sau3AI	GATC	3 cut(s)	53, 266, 583
Sau96I	GGNCC	3 cut(s)	420, 525, 863
SchI	GAGTC	2 cut(s)	14, 23
ScrFI	CCNGG	2 cut(s)	233, 234
SduI	GDGCHC	1 cut(s)	796
SfaNI	GCATC	1 cut(s)	531
SinI	GGWCC	1 cut(s)	525
SmaI	CCCGGG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	782
Sse9I	AATT	7 cut(s)	176, 249, 311, 366, 634, 711, 798
SsiI	CCGC	6 cut(s)	23, 65, 131, 544, 626, 722
SspMI	CTAG	2 cut(s)	357, 696
StyD4I	CCNGG	2 cut(s)	231, 232
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	4 cut(s)	320, 389, 659, 706
TaiI	ACGT	2 cut(s)	217, 754
TaqI	TCGA	3 cut(s)	164, 531, 552
TaqII	GACCGA	1 cut(s)	828
TasI	AATT	7 cut(s)	176, 249, 311, 366, 634, 711, 798
TauI	GCSGC	2 cut(s)	26, 134
TfiI	GAWTC	5 cut(s)	71, 86, 202, 446, 914
Tru1I	TTAA	3 cut(s)	462, 642, 801
Tru9I	TTAA	3 cut(s)	462, 642, 801
TscAI	CASTG	3 cut(s)	178, 325, 844
TseFI	GTSAC	2 cut(s)	511, 706
TseI	GCWGC	2 cut(s)	134, 623
Tsp45I	GTSAC	2 cut(s)	511, 706
TspDTI	ATGAA	3 cut(s)	317, 427, 606
TspGWI	ACGGA	1 cut(s)	133
TspMI	CCCGGG	1 cut(s)	232
TspRI	CASTG	3 cut(s)	178, 325, 844
VpaK11BI	GGWCC	1 cut(s)	525
XapI	RAATTY	1 cut(s)	176
XmaI	CCCGGG	1 cut(s)	232
XmaJI	CCTAGG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	357, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.