Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Forward (+)

40743059 .. 40751524

Gene Structure 8466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGTCTACGGAGTCCTCATACGTTTCGTCACCGGAGGCACCGCGGAGGCGTTCGTCGTCGCCGCCGCCGCCCAAATCACCTACTTCAGACACTATGGAGAAGCCCACATATGTCAGGTTTCTTGTATCAAATGCTGCAGCTGGTTCTGTTATTGGAAAGGGTGGTGCAACAATCACTGACTTTCAGTCGCAATCTGGAGCACGAATTCAGCTATCACGCAATCATGAATTTTTCCCAGGAACAACTGATAGGATTATTATGATTTCTGGAACAATAAATGAAATTCTCAAGGCTGTGGAACTTGTTCTTACTAAGTTGCTCAATGAGCTATATTCTGAGGAAAGTGACGACGTTGAACCGAGAACAAAGCTGAGACTAATTGTTCCAAATAGTTCTTGTGGTGGGATAATTGGGAAGCAAGGATCTACAATAAAGTCATTTATTGAAGACTCACAGGCTGGGATTAAAATATCACCTCAGGACAATAATTATTTTGGGGTAAATGACCGGCTAGTTACACTAACAGGAACTTTGGAGGAACAGATGCGAGCAGCTGATTTAATTCTTTCTAAGCTATCTGAGGACTCTCACTACACTCAGTCAATGAATGCCCCATTTTCATATCCAGGTGTTTTCTTCTCGGGTTTTCATGGTATTCCATATACATATGTGCTTCCTTCTGTGTCAACAGCAGCCTACAATGCAGTGAGCTACGCACCACCGAATGGACCATCGAATGGGGCTGCAGGAAAGTTTCAGAATAACAAGGAGGATCGGAGCAACAACTCGGTCACTATAGGTGTCGCAGATAGTCATATTGGTCTGGTTGTTGGTCGTGGTGGAAGGACTATAATGGAGATTAGTCAGGGTAGTGGGGCCAGGATAAAGATATCTGATAGGGGTGATTTCATGTCTGGAACTACTGATAGGAAAGTGACAATTACAGGGTCACAGAGGGCAATCCAAGCGGCCGAGACGATGATAATGCAGAAAGTAAACTATGCTTCTGAGAGGGCGTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

342

Amino Acids

36.81

Weight (kDa)

6.47

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	39 - 104	1.4e-15	KH domain
KH_1	PF00013	125 - 190	1.5e-14	KH domain
KH_1	PF00013	265 - 331	1.8e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	2 cut(s)	728, 740
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	46
AciI	CCGC	6 cut(s)	44, 46, 65, 68, 71, 971
AclWI	GGATC	2 cut(s)	433, 783
AcoI	YGGCCR	1 cut(s)	972
AcsI	RAATTY	3 cut(s)	207, 230, 285
AcuI	CTGAAG	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	728, 740
AgsI	TTSAA	2 cut(s)	359, 449
AhdI	GACNNNNNGTC	1 cut(s)	187
AjnI	CCWGG	3 cut(s)	238, 628, 881
AluBI	AGCT	7 cut(s)	143, 214, 331, 373, 557, 577, 714
AluI	AGCT	7 cut(s)	143, 214, 331, 373, 557, 577, 714
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	370, 971
AlwI	GGATC	2 cut(s)	433, 783
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	2 cut(s)	879, 972
ApeKI	GCWGC	5 cut(s)	137, 140, 554, 695, 746
ApoI	RAATTY	3 cut(s)	207, 230, 285
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	731, 879
AsuHPI	GGTGA	4 cut(s)	24, 72, 468, 917
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	1 cut(s)	731
AxyI	CCTNAGG	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	5 cut(s)	124, 152, 566, 707, 733
BccI	CCATC	1 cut(s)	742
BcgI	CGANNNNNNTGC	2 cut(s)	970, 1004
BciT130I	CCWGG	3 cut(s)	240, 630, 883
BcoDI	GTCTC	2 cut(s)	370, 971
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	3 cut(s)	138, 747, 798
BisI	GCNGC	9 cut(s)	65, 68, 71, 138, 141, 555, 696, 747, 972
BlsI	GCNGC	9 cut(s)	66, 69, 72, 139, 142, 556, 697, 748, 973
Bme1390I	CCNGG	3 cut(s)	240, 630, 883
Bme18I	GGWCC	1 cut(s)	731
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	643
BmgT120I	GGNCC	2 cut(s)	731, 879
BmiI	GGNNCC	2 cut(s)	42, 880
BmrFI	CCNGG	3 cut(s)	240, 630, 883
BmsI	GCATC	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	44, 238
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	728, 740
Bse118I	RCCGGY	1 cut(s)	510
Bse21I	CCTNAGG	1 cut(s)	480
BseBI	CCWGG	3 cut(s)	240, 630, 883
BseDI	CCNNGG	2 cut(s)	44, 238
BseLI	CCNNNNNNNGG	2 cut(s)	728, 740
BseMII	CTCAG	6 cut(s)	330, 365, 494, 573, 614, 1002
BseX3I	CGGCCG	1 cut(s)	972
BseXI	GCAGC	5 cut(s)	124, 152, 566, 707, 733
BseYI	CCCAGC	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	975
BshFI	GGCC	2 cut(s)	881, 974
BshNI	GGYRCC	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	975
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	643
BsiSI	CCGG	2 cut(s)	35, 511
BslI	CCNNNNNNNGG	2 cut(s)	728, 740
BsmAI	GTCTC	2 cut(s)	370, 971
BsmBI	CGTCTC	1 cut(s)	971
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	2 cut(s)	881, 974
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	425, 775
BspACI	CCGC	6 cut(s)	44, 46, 65, 68, 71, 971
BspANI	GGCC	2 cut(s)	881, 974
BspCNI	CTCAG	6 cut(s)	331, 366, 493, 574, 613, 1003
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	42, 880
BspMAI	CTGCAG	2 cut(s)	142, 751
BspPI	GGATC	2 cut(s)	433, 783
BspT107I	GGYRCC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	510
BssAI	RCCGGY	1 cut(s)	510
BssECI	CCNNGG	2 cut(s)	44, 238
BssMI	GATC	2 cut(s)	425, 775
Bst2UI	CCWGG	3 cut(s)	240, 630, 883
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	8 cut(s)	315, 339, 374, 480, 573, 582, 600, 1011
BstDSI	CCRYGG	1 cut(s)	44
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	2 cut(s)	428, 778
BstMAI	GTCTC	2 cut(s)	370, 971
BstMBI	GATC	2 cut(s)	425, 775
BstMCI	CGRYCG	1 cut(s)	975
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 328, 704, 968
BstNI	CCWGG	3 cut(s)	240, 630, 883
BstSCI	CCNGG	3 cut(s)	238, 628, 881
BstSFI	CTRYAG	3 cut(s)	138, 747, 798
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	5 cut(s)	124, 152, 566, 707, 733
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BstZI	CGGCCG	1 cut(s)	972
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	881, 974
BtgI	CCRYGG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	2 cut(s)	177, 714
Cac8I	GCNNGC	1 cut(s)	552
CciI	TCATGA	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	731, 879
Cfr42I	CCGCGG	1 cut(s)	47
CviAII	CATG	3 cut(s)	227, 653, 913
DdeI	CTNAG	8 cut(s)	315, 339, 374, 480, 573, 582, 600, 1011
DpnI	GATC	2 cut(s)	427, 777
DpnII	GATC	2 cut(s)	425, 775
DriI	GACNNNNNGTC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	972
EagI	CGGCCG	1 cut(s)	972
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	972
Eco32I	GATATC	1 cut(s)	894
Eco47I	GGWCC	1 cut(s)	731
Eco52I	CGGCCG	1 cut(s)	972
Eco57I	CTGAAG	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	238, 628, 881
EcoRV	GATATC	1 cut(s)	894
Esp3I	CGTCTC	1 cut(s)	971
FaeI	CATG	3 cut(s)	230, 656, 916
FatI	CATG	3 cut(s)	226, 652, 912
FauNDI	CATATG	2 cut(s)	112, 670
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	9 cut(s)	65, 68, 71, 138, 141, 555, 696, 747, 972
Fsp4HI	GCNGC	9 cut(s)	65, 68, 71, 138, 141, 555, 696, 747, 972
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	9 cut(s)	65, 68, 71, 138, 141, 555, 696, 747, 972
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	881, 974
HapII	CCGG	2 cut(s)	35, 511
Hin1II	CATG	3 cut(s)	230, 656, 916
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HinfI	GANTC	4 cut(s)	5, 14, 452, 587
HpaII	CCGG	2 cut(s)	35, 511
HphI	GGTGA	4 cut(s)	24, 72, 468, 917
Hpy166II	GTNNAC	3 cut(s)	9, 690, 1000
Hpy188I	TCNGA	7 cut(s)	91, 340, 583, 762, 780, 898, 1012
Hpy188III	TCNNGA	5 cut(s)	198, 227, 270, 482, 918
Hpy8I	GTNNAC	3 cut(s)	9, 690, 1000
Hpy99I	CGWCG	3 cut(s)	61, 64, 356
HpyAV	CCTTC	2 cut(s)	690, 840
HpyCH4IV	ACGT	2 cut(s)	24, 354
HpyCH4V	TGCA	5 cut(s)	140, 170, 707, 749, 991
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 328, 704, 968
HpyF3I	CTNAG	8 cut(s)	315, 339, 374, 480, 573, 582, 600, 1011
HpySE526I	ACGT	2 cut(s)	24, 354
Hsp92II	CATG	3 cut(s)	230, 656, 916
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	425, 775
LmnI	GCTCC	2 cut(s)	200, 780
Lsp1109I	GCAGC	5 cut(s)	124, 152, 566, 707, 733
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	2 cut(s)	24, 354
MaeIII	GTNAC	6 cut(s)	30, 347, 517, 793, 937, 951
MalI	GATC	2 cut(s)	427, 777
MboI	GATC	2 cut(s)	425, 775
MboII	GAAGA	2 cut(s)	461, 631
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	8 cut(s)	207, 230, 285, 381, 411, 490, 564, 942
MlyI	GAGTC	4 cut(s)	14, 23, 446, 581
MmeI	TCCRAC	1 cut(s)	1002
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	2 cut(s)	468, 563
MspA1I	CMGCKG	3 cut(s)	46, 143, 557
MspI	CCGG	2 cut(s)	35, 511
MspR9I	CCNGG	3 cut(s)	240, 630, 883
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	3 cut(s)	240, 630, 883
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	70, 328, 704, 968
NdeI	CATATG	2 cut(s)	112, 670
NdeII	GATC	2 cut(s)	425, 775
NlaIII	CATG	3 cut(s)	230, 656, 916
NlaIV	GGNNCC	2 cut(s)	42, 880
NmeAIII	GCCGAG	1 cut(s)	1000
NmuCI	GTSAC	5 cut(s)	30, 347, 793, 937, 951
PagI	TCATGA	1 cut(s)	226
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	306
PflMI	CCANNNNNTGG	2 cut(s)	728, 740
PkrI	GCNGC	9 cut(s)	66, 69, 72, 139, 142, 556, 697, 748, 973
PleI	GAGTC	4 cut(s)	13, 22, 446, 581
PpsI	GAGTC	4 cut(s)	13, 22, 446, 581
Psp6I	CCWGG	3 cut(s)	238, 628, 881
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	3 cut(s)	238, 628, 881
PspN4I	GGNNCC	2 cut(s)	42, 880
PspPI	GGNCC	2 cut(s)	731, 879
PstI	CTGCAG	2 cut(s)	142, 751
PsuI	RGATCY	1 cut(s)	425
PvuII	CAGCTG	2 cut(s)	143, 557
SacII	CCGCGG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	468, 563
SatI	GCNGC	9 cut(s)	65, 68, 71, 138, 141, 555, 696, 747, 972
Sau3AI	GATC	2 cut(s)	425, 775
Sau96I	GGNCC	2 cut(s)	731, 879
SchI	GAGTC	4 cut(s)	14, 23, 446, 581
ScrFI	CCNGG	3 cut(s)	240, 630, 883
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	1 cut(s)	537
SfcI	CTRYAG	3 cut(s)	138, 747, 798
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	8 cut(s)	207, 230, 285, 381, 411, 490, 564, 942
SsiI	CCGC	6 cut(s)	44, 46, 65, 68, 71, 971
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	3 cut(s)	238, 628, 881
TaiI	ACGT	2 cut(s)	27, 357
TaqI	TCGA	1 cut(s)	737
TaqII	GACCGA	1 cut(s)	781
TasI	AATT	8 cut(s)	207, 230, 285, 381, 411, 490, 564, 942
TauI	GCSGC	4 cut(s)	67, 70, 73, 974
Tru1I	TTAA	2 cut(s)	468, 563
Tru9I	TTAA	2 cut(s)	468, 563
TscAI	CASTG	2 cut(s)	184, 714
TseFI	GTSAC	5 cut(s)	30, 347, 793, 937, 951
TseI	GCWGC	5 cut(s)	137, 140, 554, 695, 746
Tsp45I	GTSAC	5 cut(s)	30, 347, 793, 937, 951
TspDTI	ATGAA	6 cut(s)	243, 297, 612, 623, 641, 901
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	184, 714
Van91I	CCANNNNNTGG	2 cut(s)	728, 740
VpaK11BI	GGWCC	1 cut(s)	731
XapI	RAATTY	3 cut(s)	207, 230, 285
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.