Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Forward (+)

28564721 .. 28569566

Gene Structure 4846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1237900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAGTCCACCGAGGCCTCCTACATGTCGTCACCGGAGGCCCCGCGGAGGCGCTTATCGCCGCCGCCGCCCAAATCACCGGGTTCCGATTCTGTGGAGAAGCCTACATATGTTAGGTTTCTGGTATCAAATGCTGCAGCTGGTTCTGTTATTGGAAAGGGTGGTGCAACAATCACTGATTTTCAATCGCAGTCTGGAGCAAGAATTCAGTTGTCACGCAATCATGAGTTTTTCCCCGGAACAACTGATAGGATTATTATGATCTCTGGAACAATTAATGAAATAGTCAAGGCTGTGGACCTTGTTCTTGCTAAGTTACTGAGTGAGCTTCATTCTGAAGAAACTGAAGAAGTGGAGCCGAGAACAAAGCTGAGATTAGTTGTTCCAAATAGTTCATGTGGTGGCATAATTGGGAAAGGAGGGTCTACCATAAAGTCATTTATTGAAGAATCACAAGCTGGAATTAAAATATCACCACAAGACAATAATTACTTTGGATTGAATGATCGACTGGTGACAGTAACAGGAAGTCTGGATGAACAGATGCGAGCAGTTGATTTAATTGTTGCTAAGCTATCTGAAGACTCGCATTATGCTCAGTCTATGAATGCCCCATTTTCATATCCAGGTGTTTCCTTCTCGGGTTTTCATGGTATTCCATATACATATGTGCTTCCTTCTGTTGCAACAGCAGCGTACAATGCAATGAGTTATGGACCACCAAACGGGACTGGAGGAAAGTTTCAGAATGCTAAGGAGGATCAAAGCAACTCGGTCACAATTGGTGTTGCAGATGAGCATATTGGGTTGGTTCTTGGTCGTGGTGGAAGGACCATAACAGAGATTAGTCAGGGTAGTGGAGCCAAGATAAAGATATCTGATAGGGGTGACTTCATGTCTGGAACTACCGACAGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

307

Amino Acids

32.65

Weight (kDa)

5.8

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	38 - 103	1.6e-15	KH domain
KH_1	PF00013	124 - 188	3.7e-15	KH domain
KH_1	PF00013	259 - 297	6.5e-08	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	425
AccII	CGCG	1 cut(s)	46
AciI	CCGC	5 cut(s)	44, 46, 62, 65, 68
AclWI	GGATC	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	3 cut(s)	357, 366, 600
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	2 cut(s)	48, 725
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	185, 446, 502
AhdI	GACNNNNNGTC	1 cut(s)	895
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	5 cut(s)	140, 328, 370, 458, 574
AluI	AGCT	5 cut(s)	140, 328, 370, 458, 574
AlwI	GGATC	1 cut(s)	768
Ama87I	CYCGRG	1 cut(s)	640
AoxI	GGCC	2 cut(s)	15, 39
ApeKI	GCWGC	3 cut(s)	134, 137, 692
ApoI	RAATTY	1 cut(s)	204
AseI	ATTAAT	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	4 cut(s)	40, 298, 716, 831
AsuC2I	CCSGG	2 cut(s)	81, 237
AsuHPI	GGTGA	5 cut(s)	24, 69, 465, 526, 899
AvaI	CYCGRG	1 cut(s)	640
AvaII	GGWCC	3 cut(s)	298, 716, 831
BbsI	GAAGAC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	121, 149, 704
BciT130I	CCWGG	1 cut(s)	627
BcnI	CCSGG	2 cut(s)	81, 237
BfmI	CTRYAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	6 cut(s)	62, 65, 68, 135, 138, 693
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	6 cut(s)	63, 66, 69, 136, 139, 694
Bme1390I	CCNGG	3 cut(s)	81, 237, 627
Bme18I	GGWCC	3 cut(s)	298, 716, 831
BmeRI	GACNNNNNGTC	1 cut(s)	895
BmeT110I	CYCGRG	1 cut(s)	640
BmgT120I	GGNCC	4 cut(s)	40, 298, 716, 831
BmiI	GGNNCC	4 cut(s)	42, 85, 357, 862
BmrFI	CCNGG	3 cut(s)	81, 237, 627
BmsI	GCATC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	588
BpmI	CTGGAG	2 cut(s)	216, 753
Bpu10I	CCTNAGC	1 cut(s)	753
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuMI	CCSGG	2 cut(s)	81, 237
BsaJI	CCNNGG	3 cut(s)	12, 44, 235
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 725
Bse1I	ACTGG	2 cut(s)	516, 736
Bse3DI	GCAATG	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	3 cut(s)	12, 44, 235
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	2 cut(s)	48, 725
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	3 cut(s)	311, 362, 611
BseNI	ACTGG	2 cut(s)	516, 736
BseXI	GCAGC	3 cut(s)	121, 149, 704
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	17, 41
BsiHKCI	CYCGRG	1 cut(s)	640
BsiSI	CCGG	3 cut(s)	35, 80, 237
BslFI	GGGAC	1 cut(s)	742
BslI	CCNNNNNNNGG	2 cut(s)	48, 725
BsmFI	GGGAC	1 cut(s)	742
BsmI	GAATGC	2 cut(s)	613, 754
BsnI	GGCC	2 cut(s)	17, 41
BsoBI	CYCGRG	1 cut(s)	640
Bsp143I	GATC	3 cut(s)	261, 505, 760
Bsp1720I	GCTNAGC	1 cut(s)	570
BspACI	CCGC	5 cut(s)	44, 46, 62, 65, 68
BspANI	GGCC	2 cut(s)	17, 41
BspCNI	CTCAG	3 cut(s)	312, 363, 610
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	4 cut(s)	42, 85, 357, 862
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	516, 736
BssECI	CCNNGG	3 cut(s)	12, 44, 235
BssMI	GATC	3 cut(s)	261, 505, 760
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	6 cut(s)	312, 320, 371, 570, 597, 753
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	264, 508, 763
BstMBI	GATC	3 cut(s)	261, 505, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 67, 692, 701
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	3 cut(s)	79, 235, 625
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	3 cut(s)	121, 149, 704
BstV2I	GAAGAC	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	17, 41
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	549
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	4 cut(s)	40, 298, 716, 831
Cfr42I	CCGCGG	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	5 cut(s)	25, 224, 396, 650, 895
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	6 cut(s)	312, 320, 371, 570, 597, 753
DpnI	GATC	3 cut(s)	263, 507, 762
DpnII	GATC	3 cut(s)	261, 505, 760
DriI	GACNNNNNGTC	1 cut(s)	895
Eam1105I	GACNNNNNGTC	1 cut(s)	895
Eco147I	AGGCCT	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	3 cut(s)	298, 716, 831
Eco57I	CTGAAG	3 cut(s)	357, 366, 600
Eco88I	CYCGRG	1 cut(s)	640
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	625
EcoRV	GATATC	1 cut(s)	876
FaeI	CATG	5 cut(s)	28, 227, 399, 653, 898
FaqI	GGGAC	1 cut(s)	742
FatI	CATG	5 cut(s)	24, 223, 395, 649, 894
FauI	CCCGC	1 cut(s)	51
FauNDI	CATATG	2 cut(s)	109, 667
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	6 cut(s)	62, 65, 68, 135, 138, 693
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	6 cut(s)	62, 65, 68, 135, 138, 693
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	6 cut(s)	62, 65, 68, 135, 138, 693
GsuI	CTGGAG	2 cut(s)	216, 753
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	17, 41
HapII	CCGG	3 cut(s)	35, 80, 237
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	5 cut(s)	28, 227, 399, 653, 898
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	4 cut(s)	5, 89, 449, 584
HpaII	CCGG	3 cut(s)	35, 80, 237
HphI	GGTGA	5 cut(s)	24, 69, 465, 526, 899
Hpy166II	GTNNAC	3 cut(s)	9, 298, 426
Hpy188I	TCNGA	5 cut(s)	88, 337, 580, 747, 880
Hpy188III	TCNNGA	5 cut(s)	195, 224, 267, 533, 900
Hpy8I	GTNNAC	3 cut(s)	9, 298, 426
HpyAV	CCTTC	3 cut(s)	646, 687, 822
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	5 cut(s)	137, 167, 686, 704, 791
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 67, 692, 701
HpyF3I	CTNAG	6 cut(s)	312, 320, 371, 570, 597, 753
Hsp92II	CATG	5 cut(s)	28, 227, 399, 653, 898
HspAI	GCGC	1 cut(s)	52
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	3 cut(s)	261, 505, 760
LmnI	GCTCC	3 cut(s)	197, 355, 860
Lsp1109I	GCAGC	3 cut(s)	121, 149, 704
LweI	GCATC	1 cut(s)	534
MaeIII	GTNAC	7 cut(s)	30, 213, 315, 514, 520, 775, 887
MalI	GATC	3 cut(s)	263, 507, 762
MboI	GATC	3 cut(s)	261, 505, 760
MboII	GAAGA	4 cut(s)	350, 359, 458, 593
MfeI	CAATTG	1 cut(s)	780
MluCI	AATT	7 cut(s)	204, 273, 408, 462, 487, 561, 780
MlyI	GAGTC	2 cut(s)	14, 578
MnlI	CCTC	7 cut(s)	7, 28, 31, 42, 413, 728, 751
MseI	TTAA	4 cut(s)	276, 465, 560, 919
MspA1I	CMGCKG	2 cut(s)	46, 140
MspI	CCGG	3 cut(s)	35, 80, 237
MspR9I	CCNGG	3 cut(s)	81, 237, 627
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	2 cut(s)	613, 754
MvaI	CCWGG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	58, 67, 692, 701
NciI	CCSGG	2 cut(s)	81, 237
NdeI	CATATG	2 cut(s)	109, 667
NdeII	GATC	3 cut(s)	261, 505, 760
NlaIII	CATG	5 cut(s)	28, 227, 399, 653, 898
NlaIV	GGNNCC	4 cut(s)	42, 85, 357, 862
NmeAIII	GCCGAG	1 cut(s)	384
NmuCI	GTSAC	5 cut(s)	30, 213, 514, 775, 887
NspI	RCATGY	1 cut(s)	28
PagI	TCATGA	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	17
PciI	ACATGT	1 cut(s)	24
PctI	GAATGC	2 cut(s)	613, 754
PfeI	GAWTC	2 cut(s)	89, 449
PkrI	GCNGC	6 cut(s)	63, 66, 69, 136, 139, 694
PleI	GAGTC	2 cut(s)	13, 578
PpsI	GAGTC	2 cut(s)	13, 578
PscI	ACATGT	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	4 cut(s)	42, 85, 357, 862
PspPI	GGNCC	4 cut(s)	40, 298, 716, 831
PstI	CTGCAG	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
SacII	CCGCGG	1 cut(s)	47
SaqAI	TTAA	4 cut(s)	276, 465, 560, 919
SatI	GCNGC	6 cut(s)	62, 65, 68, 135, 138, 693
Sau3AI	GATC	3 cut(s)	261, 505, 760
Sau96I	GGNCC	4 cut(s)	40, 298, 716, 831
SchI	GAGTC	2 cut(s)	14, 578
ScrFI	CCNGG	3 cut(s)	81, 237, 627
SetI	ASST	9 cut(s)	119, 142, 303, 330, 372, 460, 576, 631, 917
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	135
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SinI	GGWCC	3 cut(s)	298, 716, 831
Sse9I	AATT	7 cut(s)	204, 273, 408, 462, 487, 561, 780
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	5 cut(s)	44, 46, 62, 65, 68
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	3 cut(s)	79, 235, 625
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	1 cut(s)	508
TaqII	GACCGA	1 cut(s)	763
TasI	AATT	7 cut(s)	204, 273, 408, 462, 487, 561, 780
TauI	GCSGC	3 cut(s)	64, 67, 70
TfiI	GAWTC	2 cut(s)	89, 449
Tru1I	TTAA	4 cut(s)	276, 465, 560, 919
Tru9I	TTAA	4 cut(s)	276, 465, 560, 919
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	5 cut(s)	30, 213, 514, 775, 887
TseI	GCWGC	3 cut(s)	134, 137, 692
Tsp45I	GTSAC	5 cut(s)	30, 213, 514, 775, 887
TspDTI	ATGAA	8 cut(s)	294, 320, 384, 552, 609, 620, 638, 883
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	3 cut(s)	298, 716, 831
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.