Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Reverse (-)

14860463 .. 14868398

Gene Structure 7936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G093900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGAGTCCACTGAGTCCTCCTACGTGTCGTCACCGGAGGCCCCGCGGAGGCGCTCATCCCCGCCGCCCAAATCACCAGCTTCAGATACTATGGAGAAGCCCACATACGTTAGGTTTCTGGTATCAAATGCTGCAGCTGGTTCTGTAATTGGAAAGGGTGGCGCAACAATCACTGATTTTCAATCGCAATCTGGAGCACGAATTCAGTTGTCACGCAATCATGAATTTTTCCCTGGAACAACCGATAGGATTATTATGGTTTCTGGATCAATTAATGAAATACTGAAGGCTGTGGACCTTGTTCTTGCTAAGTTACTGAGTGAGCTTTATTCTGAAGAAACTGATGATGTTGAACCAAGAACAAAGCTGAGATTAGTTGTTCCAAATAGTTCTTGTGGTGGCATAATTGGGAAGGGAGGGTCTACTATAAAGTCATTTATTGAAGGGTCACAAGCTGGAATTAAAATATCCCCTCAAGACAATAATTATTTTGGGTTGAATGACCGGCTGGTGACAGTAACAGGAAATCTGGATGAACAGATGCGGGCGGTTGATTTAATTGTTTCTAAGCTATCTGAAGACCCCCATTACACTCAGTCTATGAATGCTCCATTTTCTTATCCAGGTGTTTTCTTCTCCGGTTTTCATGGTATTCCATATACATATGTGCTTCCTTCTGTTGCCACAGCAGCGTACAATGCAATGAGCTATGGACCACCAAATGGGACTGGAGGAAAGTTTCAGAATAACAAGGAGGATCGAAGTAACTCGGTCACTATTGGCGTTGCAGATAGTCATATCGGGTTGGTTGTTGGCCGTGGTGGAAGGACCATAATGGAGATCAGTCAGGCTAGTGGGGCCAGGATAAAGATATCTGATAGGGGCGACTTCATGTCTGGAACTACTGATAGGAAGGTGACAATAACAGGGTCACAGAGGGCGATCCGTGCTGCCGAGTCTATGATACTGCAGAAGGTGTCCTATGCTTCCGAAAGGGCGATGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

336

Amino Acids

35.96

Weight (kDa)

7.78

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccI	GTMKAC	1 cut(s)	422
AccII	CGCG	1 cut(s)	46
AciI	CCGC	6 cut(s)	44, 46, 62, 65, 544, 548
AclWI	GGATC	3 cut(s)	274, 765, 937
AcoI	YGGCCR	1 cut(s)	814
AcsI	RAATTY	2 cut(s)	201, 224
AcuI	CTGAAG	4 cut(s)	66, 305, 354, 597
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	2 cut(s)	48, 722
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	4 cut(s)	182, 353, 443, 499
AhdI	GACNNNNNGTC	1 cut(s)	892
AjnI	CCWGG	3 cut(s)	232, 622, 860
AluBI	AGCT	7 cut(s)	80, 137, 325, 367, 455, 571, 708
AluI	AGCT	7 cut(s)	80, 137, 325, 367, 455, 571, 708
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	3 cut(s)	274, 765, 937
AoxI	GGCC	3 cut(s)	39, 814, 858
ApeKI	GCWGC	4 cut(s)	131, 134, 689, 950
ApoI	RAATTY	2 cut(s)	201, 224
AseI	ATTAAT	1 cut(s)	273
AspLEI	GCGC	2 cut(s)	54, 164
AspS9I	GGNCC	5 cut(s)	40, 295, 713, 828, 858
AsuHPI	GGTGA	4 cut(s)	24, 66, 523, 928
AvaII	GGWCC	3 cut(s)	295, 713, 828
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	4 cut(s)	118, 146, 701, 937
BccI	CCATC	1 cut(s)	994
BceAI	ACGGC	1 cut(s)	801
BciT130I	CCWGG	3 cut(s)	234, 624, 862
BfaI	CTAG	1 cut(s)	852
BfmI	CTRYAG	2 cut(s)	132, 968
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	5 cut(s)	65, 132, 135, 690, 951
BlsI	GCNGC	5 cut(s)	66, 133, 136, 691, 952
Bme1390I	CCNGG	3 cut(s)	234, 624, 862
Bme18I	GGWCC	3 cut(s)	295, 713, 828
BmeRI	GACNNNNNGTC	1 cut(s)	892
BmgT120I	GGNCC	5 cut(s)	40, 295, 713, 828, 858
BmiI	GGNNCC	2 cut(s)	42, 859
BmrFI	CCNGG	3 cut(s)	234, 624, 862
BmsI	GCATC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	585
BpmI	CTGGAG	2 cut(s)	213, 750
BpuEI	CTTGAG	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	44, 232, 817
BsaWI	WCCGGW	2 cut(s)	34, 638
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 722
Bse118I	RCCGGY	1 cut(s)	504
Bse1I	ACTGG	1 cut(s)	733
Bse3DI	GCAATG	1 cut(s)	708
BseBI	CCWGG	3 cut(s)	234, 624, 862
BseDI	CCNNGG	3 cut(s)	44, 232, 817
BseGI	GGATG	2 cut(s)	56, 538
BseLI	CCNNNNNNNGG	2 cut(s)	48, 722
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	3 cut(s)	308, 359, 608
BseNI	ACTGG	1 cut(s)	733
BseXI	GCAGC	4 cut(s)	118, 146, 701, 937
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	3 cut(s)	41, 816, 860
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	3 cut(s)	35, 505, 639
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	2 cut(s)	48, 722
BsmFI	GGGAC	1 cut(s)	739
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	3 cut(s)	41, 816, 860
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	266, 757, 840, 942
BspACI	CCGC	6 cut(s)	44, 46, 62, 65, 544, 548
BspANI	GGCC	3 cut(s)	41, 816, 860
BspCNI	CTCAG	4 cut(s)	4, 309, 360, 607
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	42, 859
BspMAI	CTGCAG	2 cut(s)	136, 972
BspPI	GGATC	3 cut(s)	274, 765, 937
BsrDI	GCAATG	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	733
BssAI	RCCGGY	1 cut(s)	504
BssECI	CCNNGG	3 cut(s)	44, 232, 817
BssMI	GATC	4 cut(s)	266, 757, 840, 942
Bst2UI	CCWGG	3 cut(s)	234, 624, 862
Bst4CI	ACNGT	1 cut(s)	517
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	6 cut(s)	12, 309, 317, 368, 567, 594
BstDSI	CCRYGG	2 cut(s)	44, 817
BstF5I	GGATG	2 cut(s)	56, 538
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 164
BstKTI	GATC	4 cut(s)	269, 760, 843, 945
BstMBI	GATC	4 cut(s)	266, 757, 840, 942
BstMWI	GCNNNNNNNGC	4 cut(s)	689, 698, 857, 947
BstNI	CCWGG	3 cut(s)	234, 624, 862
BstSCI	CCNGG	3 cut(s)	232, 622, 860
BstSFI	CTRYAG	2 cut(s)	132, 968
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	4 cut(s)	118, 146, 701, 937
BstV2I	GAAGAC	1 cut(s)	585
BsuRI	GGCC	3 cut(s)	41, 816, 860
BtgI	CCRYGG	2 cut(s)	44, 817
BtsCI	GGATG	2 cut(s)	56, 538
BtsIMutI	CAGTG	2 cut(s)	9, 171
Cac8I	GCNNGC	1 cut(s)	546
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	2 cut(s)	54, 164
Cfr10I	RCCGGY	1 cut(s)	504
Cfr13I	GGNCC	5 cut(s)	40, 295, 713, 828, 858
Cfr42I	CCGCGG	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	3 cut(s)	221, 647, 892
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	6 cut(s)	12, 309, 317, 368, 567, 594
DpnI	GATC	4 cut(s)	268, 759, 842, 944
DpnII	GATC	4 cut(s)	266, 757, 840, 942
DriI	GACNNNNNGTC	1 cut(s)	892
EaeI	YGGCCR	1 cut(s)	814
Eam1105I	GACNNNNNGTC	1 cut(s)	892
Eco32I	GATATC	1 cut(s)	873
Eco47I	GGWCC	3 cut(s)	295, 713, 828
Eco57I	CTGAAG	4 cut(s)	66, 305, 354, 597
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	3 cut(s)	232, 622, 860
EcoRV	GATATC	1 cut(s)	873
FaeI	CATG	3 cut(s)	224, 650, 895
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	3 cut(s)	220, 646, 891
FauI	CCCGC	3 cut(s)	51, 69, 537
FauNDI	CATATG	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	422
Fnu4HI	GCNGC	5 cut(s)	65, 132, 135, 690, 951
FokI	GGATG	2 cut(s)	43, 545
Fsp4HI	GCNGC	5 cut(s)	65, 132, 135, 690, 951
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	2 cut(s)	53, 163
GluI	GCNGC	5 cut(s)	65, 132, 135, 690, 951
GsuI	CTGGAG	2 cut(s)	213, 750
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	41, 816, 860
HapII	CCGG	3 cut(s)	35, 505, 639
HhaI	GCGC	2 cut(s)	54, 164
Hin1II	CATG	3 cut(s)	224, 650, 895
Hin6I	GCGC	2 cut(s)	52, 162
HinP1I	GCGC	2 cut(s)	52, 162
HinfI	GANTC	3 cut(s)	5, 14, 956
HpaII	CCGG	3 cut(s)	35, 505, 639
HphI	GGTGA	4 cut(s)	24, 66, 523, 928
Hpy166II	GTNNAC	3 cut(s)	9, 295, 423
Hpy188I	TCNGA	6 cut(s)	85, 334, 577, 744, 877, 991
Hpy188III	TCNNGA	6 cut(s)	192, 221, 264, 476, 530, 897
Hpy8I	GTNNAC	3 cut(s)	9, 295, 423
HpyAV	CCTTC	7 cut(s)	280, 406, 437, 684, 819, 907, 967
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	24, 108
HpyCH4V	TGCA	4 cut(s)	134, 701, 788, 970
HpyF10VI	GCNNNNNNNGC	4 cut(s)	689, 698, 857, 947
HpyF3I	CTNAG	6 cut(s)	12, 309, 317, 368, 567, 594
HpySE526I	ACGT	2 cut(s)	24, 108
Hsp92II	CATG	3 cut(s)	224, 650, 895
HspAI	GCGC	2 cut(s)	52, 162
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	4 cut(s)	266, 757, 840, 942
LmnI	GCTCC	2 cut(s)	194, 613
Lsp1109I	GCAGC	4 cut(s)	118, 146, 701, 937
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	2 cut(s)	24, 108
MalI	GATC	4 cut(s)	268, 759, 842, 944
MboI	GATC	4 cut(s)	266, 757, 840, 942
MboII	GAAGA	3 cut(s)	347, 590, 625
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	8 cut(s)	147, 201, 224, 270, 405, 459, 484, 558
MlyI	GAGTC	3 cut(s)	14, 23, 965
MnlI	CCTC	8 cut(s)	28, 31, 42, 410, 483, 725, 748, 930
MseI	TTAA	3 cut(s)	273, 462, 557
MspA1I	CMGCKG	2 cut(s)	46, 137
MspI	CCGG	3 cut(s)	35, 505, 639
MspR9I	CCNGG	3 cut(s)	234, 624, 862
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	3 cut(s)	234, 624, 862
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	689, 698, 857, 947
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	4 cut(s)	266, 757, 840, 942
NlaIII	CATG	3 cut(s)	224, 650, 895
NlaIV	GGNNCC	2 cut(s)	42, 859
NmeAIII	GCCGAG	1 cut(s)	979
NmuCI	GTSAC	7 cut(s)	30, 210, 447, 511, 772, 916, 930
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	610
PflMI	CCANNNNNTGG	1 cut(s)	722
PkrI	GCNGC	5 cut(s)	66, 133, 136, 691, 952
PleI	GAGTC	3 cut(s)	13, 22, 964
PpsI	GAGTC	3 cut(s)	13, 22, 964
Ppu21I	YACGTR	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	3 cut(s)	232, 622, 860
PspGI	CCWGG	3 cut(s)	232, 622, 860
PspN4I	GGNNCC	2 cut(s)	42, 859
PspPI	GGNCC	5 cut(s)	40, 295, 713, 828, 858
PstI	CTGCAG	2 cut(s)	136, 972
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
SacII	CCGCGG	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	273, 462, 557
SatI	GCNGC	5 cut(s)	65, 132, 135, 690, 951
Sau3AI	GATC	4 cut(s)	266, 757, 840, 942
Sau96I	GGNCC	5 cut(s)	40, 295, 713, 828, 858
SchI	GAGTC	3 cut(s)	14, 23, 965
ScrFI	CCNGG	3 cut(s)	234, 624, 862
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	531
SfcI	CTRYAG	2 cut(s)	132, 968
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SinI	GGWCC	3 cut(s)	295, 713, 828
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	8 cut(s)	147, 201, 224, 270, 405, 459, 484, 558
SsiI	CCGC	6 cut(s)	44, 46, 62, 65, 544, 548
SspMI	CTAG	1 cut(s)	852
StyD4I	CCNGG	3 cut(s)	232, 622, 860
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	27, 111
TaqI	TCGA	1 cut(s)	760
TaqII	GACCGA	1 cut(s)	760
TasI	AATT	8 cut(s)	147, 201, 224, 270, 405, 459, 484, 558
TauI	GCSGC	1 cut(s)	67
Tru1I	TTAA	3 cut(s)	273, 462, 557
Tru9I	TTAA	3 cut(s)	273, 462, 557
TscAI	CASTG	2 cut(s)	16, 178
TseFI	GTSAC	7 cut(s)	30, 210, 447, 511, 772, 916, 930
TseI	GCWGC	4 cut(s)	131, 134, 689, 950
Tsp45I	GTSAC	7 cut(s)	30, 210, 447, 511, 772, 916, 930
TspDTI	ATGAA	6 cut(s)	237, 291, 549, 617, 635, 880
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	2 cut(s)	16, 178
Van91I	CCANNNNNTGG	1 cut(s)	722
VpaK11BI	GGWCC	3 cut(s)	295, 713, 828
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	2 cut(s)	201, 224
XmiI	GTMKAC	1 cut(s)	422
XspI	CTAG	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.