Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Reverse (-)

21107163 .. 21121883

Gene Structure 14721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0121700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGAACGTCAAGTCCACGGTTTTTGCGAGGCAAGATGCTTTGGAGGGAAGGCCCATTGGGACGGATTTGCTTCGCGCCACTGATGAAGTCATTTGTGATGCCAGGAGCAAAGTTGATCCAGCAGTAGGAATCTCGTTTGAAAAGATTTTTGATATAATTGGCTTGGTCTACCAATACATAAAGTTATTGCATCAAGTGTCCCCACAACAATGGATATTTAAGGAACTACAGGATACTGGGAACATGGATTTTAGATTTGCAGAGGAGCAGCCTCAGGATGATTATGCCTTAGAACTTGCAGTTCATGTCTTGTTAACTAATGTCAAAACGTCTTTATGTTGCAGGAAATTTACTAATTTATGCAGCAGAACATGTTATTTATGTGTCCTATGCATACAAGATTCGGGAGGAGAATATGTTCTTGATTTCCTTAGACCAGAAAACATGAGGATTGATGTTGTATCAAAGCCCTCATTTAAGTCAGAAGATTTCCGGTGCGAACCTTGGTTTGGGTCACATTATACTGAGGAAGATATATCTCCATCTTTGATAGATTTGTGGAAGGACCGTCCAGAAATTGATGTTTCATTGCATCTCCCAGAAAAGAATGAGTTCATTCCTACTGATTTTTCCATCTGTTCTGATGGTTTTGATACTACAGATACAGCTTCTCTGAGATGTATACTGGATGAGCCATTGGTGAAGTTCTGGTACAAACTTGATATATCCCTCCTCCAAGATGAGCTGAATGAGATTGTTTATCAGGCTAGTGTTGCCAAGCTGGAAACTTTGATATCTGTATCGACTGACAAGCTGGAGCTAAGGGTCTACGGTTTCAATGACAAGCTTCCAGCTCTGTTGTCAAAGATTCTGAAAACAACCAAACGTTTCATGCCAATTTCTGATTGTTTTATGGTTATTAAAGAAGATATGGAGCGAAAGTTAAAGAACACCAATGTGAAGCGTCTGAGTCACTCTACATACTTGAGAGTGCAAGTTTTGTTCCAGAGATTGTATGATGTTGATGAGAAGTTGCACATTTTAAGTGGACTTTCTATTTCTGATGTGAAGTCATTTATTCCTCAGCTTTGGTCCAAGGTGTACATTGAAGGCCTCTGTCATGGAAATTTGTCAGAAAAAGAAGCAATCAGGCTTTCAGATATATTTAAAACAAATTTTGGTGTACAACCACTTCCAATTGAACTGATGCGTAGTGAACAGTGTATTTGTCTTCCTCCTTCTGCTAACCTCATTAGAGATCTTCAAATTGAGCGGGAATTGAGGATCGAGTCCCTCAGATTGAGAGCCCTGATAGATCTTTTCAATGAAATTGTGGAGGAACCACTTTTCAATCAGCTAAGATCTGGAAATAGGACGAAGGAGCAGCTTGGTTATACTGTTCATTGTGGCCCGTGGGTTACTTGCAATATATTTGGATTTTATTTTTGCGTTCAGTCAGCTGAGTACAACCCGATCTACTTGAGGGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

497

Amino Acids

57.43

Weight (kDa)

5.14

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16_M	PF16187	84 - 241	4.3e-26	Middle or third domain of peptidase_M16
Peptidase_M16_M	PF16187	242 - 346	5.1e-23	Middle or third domain of peptidase_M16
PqqF-like_C_4	PF22456	440 - 495	1e-07	PQQ synthase PqqF-like, C-terminal lobe domain 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1273
AccI	GTMKAC	3 cut(s)	168, 682, 828
AccII	CGCG	1 cut(s)	75
AciI	CCGC	1 cut(s)	1273
AclI	AACGTT	1 cut(s)	886
AclWI	GGATC	2 cut(s)	110, 1292
AcsI	RAATTY	3 cut(s)	347, 1126, 1174
AfaI	GTAC	4 cut(s)	713, 1103, 1185, 1466
AfiI	CCNNNNNNNGG	2 cut(s)	125, 509
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	7 cut(s)	140, 838, 1109, 1202, 1265, 1324, 1351
AjnI	CCWGG	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AleI	CACNNNNGTG	1 cut(s)	956
AloI	GAACNNNNNNTCC	3 cut(s)	28, 402, 434
AlwI	GGATC	2 cut(s)	110, 1292
AoxI	GGCC	3 cut(s)	50, 1111, 1408
ApeKI	GCWGC	3 cut(s)	268, 363, 1384
ApoI	RAATTY	3 cut(s)	347, 1126, 1174
Asp700I	GAANNNNTTC	2 cut(s)	417, 611
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	4 cut(s)	51, 565, 1092, 1409
AsuHPI	GGTGA	1 cut(s)	712
AvaII	GGWCC	2 cut(s)	565, 1092
AxyI	CCTNAGG	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	1309
BarI	GAAGNNNNNNTAC	4 cut(s)	695, 727, 1176, 1208
BbsI	GAAGAC	1 cut(s)	1223
BbvCI	CCTCAGC	1 cut(s)	1083
BbvI	GCAGC	3 cut(s)	280, 375, 1396
BccI	CCATC	3 cut(s)	550, 638, 641
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	768
BfmI	CTRYAG	2 cut(s)	227, 657
BfuI	GTATCC	1 cut(s)	226
BglII	AGATCT	3 cut(s)	1258, 1315, 1361
BisI	GCNGC	3 cut(s)	269, 364, 1385
BlsI	GCNGC	3 cut(s)	270, 365, 1386
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	2 cut(s)	565, 1092
BmgT120I	GGNCC	4 cut(s)	51, 565, 1092, 1409
BmiI	GGNNCC	1 cut(s)	1341
BmrFI	CCNGG	1 cut(s)	103
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	5 cut(s)	25, 88, 199, 601, 1197
BmuI	ACTGGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	1223
BpmI	CTGGAG	1 cut(s)	836
Bpu10I	CCTNAGC	2 cut(s)	821, 1083
BpuEI	CTTGAG	1 cut(s)	1006
BsaJI	CCNNGG	4 cut(s)	15, 503, 1095, 1412
BsaWI	WCCGGW	1 cut(s)	492
BsaXI	ACNNNNNCTCC	4 cut(s)	402, 432, 926, 956
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 509
Bse1I	ACTGG	2 cut(s)	241, 690
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	4 cut(s)	15, 503, 1095, 1412
BseGI	GGATG	2 cut(s)	283, 694
BseLI	CCNNNNNNNGG	2 cut(s)	125, 509
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	7 cut(s)	287, 516, 665, 959, 1097, 1309, 1452
BseNI	ACTGG	2 cut(s)	241, 690
BseRI	GAGGAG	3 cut(s)	278, 423, 722
BseXI	GCAGC	3 cut(s)	280, 375, 1396
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	52, 1113, 1410
BsiSI	CCGG	1 cut(s)	493
BslFI	GGGAC	3 cut(s)	73, 184, 1276
BslI	CCNNNNNNNGG	2 cut(s)	125, 509
BsmFI	GGGAC	3 cut(s)	73, 184, 1276
BsnI	GGCC	3 cut(s)	52, 1113, 1410
Bsp1286I	GDGCHC	1 cut(s)	1309
Bsp1407I	TGTACA	2 cut(s)	1101, 1183
Bsp143I	GATC	6 cut(s)	115, 1258, 1284, 1315, 1361, 1473
BspACI	CCGC	1 cut(s)	1273
BspANI	GGCC	3 cut(s)	52, 1113, 1410
BspCNI	CTCAG	7 cut(s)	286, 517, 666, 960, 1096, 1308, 1453
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	1341
BspPI	GGATC	2 cut(s)	110, 1292
BsrBI	CCGCTC	1 cut(s)	1273
BsrDI	GCAATG	1 cut(s)	587
BsrGI	TGTACA	2 cut(s)	1101, 1183
BsrI	ACTGG	2 cut(s)	241, 690
BssECI	CCNNGG	4 cut(s)	15, 503, 1095, 1412
BssMI	GATC	6 cut(s)	115, 1258, 1284, 1315, 1361, 1473
BssNAI	GTATAC	1 cut(s)	683
BssT1I	CCWWGG	2 cut(s)	503, 1095
Bst1107I	GTATAC	1 cut(s)	683
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	6 cut(s)	19, 569, 833, 1221, 1399, 1490
BstAUI	TGTACA	2 cut(s)	1101, 1183
BstDSI	CCRYGG	2 cut(s)	15, 1412
BstF5I	GGATG	2 cut(s)	283, 694
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	6 cut(s)	118, 1261, 1287, 1318, 1364, 1476
BstMBI	GATC	6 cut(s)	115, 1258, 1284, 1315, 1361, 1473
BstMWI	GCNNNNNNNGC	1 cut(s)	773
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	2 cut(s)	227, 657
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	3 cut(s)	280, 375, 1396
BstV2I	GAAGAC	1 cut(s)	1223
BstX2I	RGATCY	3 cut(s)	1258, 1315, 1361
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	3 cut(s)	1258, 1315, 1361
BstZ17I	GTATAC	1 cut(s)	683
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	52, 1113, 1410
BtgI	CCRYGG	2 cut(s)	15, 1412
BtsCI	GGATG	2 cut(s)	283, 694
BtsIMutI	CAGTG	2 cut(s)	78, 1226
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	4 cut(s)	51, 565, 1092, 1409
CseI	GACGC	1 cut(s)	953
Csp6I	GTAC	4 cut(s)	712, 1102, 1184, 1465
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	6 cut(s)	244, 305, 372, 445, 892, 1121
CviQI	GTAC	4 cut(s)	712, 1102, 1184, 1465
DpnI	GATC	6 cut(s)	117, 1260, 1286, 1317, 1363, 1475
DpnII	GATC	6 cut(s)	115, 1258, 1284, 1315, 1361, 1473
DraI	TTTAAA	1 cut(s)	1168
Eco130I	CCWWGG	2 cut(s)	503, 1095
Eco147I	AGGCCT	1 cut(s)	1113
Eco24I	GRGCYC	1 cut(s)	1309
Eco32I	GATATC	1 cut(s)	795
Eco47I	GGWCC	2 cut(s)	565, 1092
Eco81I	CCTNAGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	795
EcoT14I	CCWWGG	2 cut(s)	503, 1095
EcoT22I	ATGCAT	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	1309
ErhI	CCWWGG	2 cut(s)	503, 1095
FaeI	CATG	6 cut(s)	247, 308, 375, 448, 895, 1124
FaqI	GGGAC	3 cut(s)	73, 184, 1276
FatI	CATG	6 cut(s)	243, 304, 371, 444, 891, 1120
FauI	CCCGC	1 cut(s)	1266
FblI	GTMKAC	3 cut(s)	168, 682, 828
Fnu4HI	GCNGC	3 cut(s)	269, 364, 1385
FokI	GGATG	2 cut(s)	290, 701
FriOI	GRGCYC	1 cut(s)	1309
Fsp4HI	GCNGC	3 cut(s)	269, 364, 1385
FspBI	CTAG	1 cut(s)	768
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	3 cut(s)	269, 364, 1385
GsuI	CTGGAG	1 cut(s)	836
HaeIII	GGCC	3 cut(s)	52, 1113, 1410
HapII	CCGG	1 cut(s)	493
HgaI	GACGC	1 cut(s)	953
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	6 cut(s)	247, 308, 375, 448, 895, 1124
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	5 cut(s)	129, 401, 868, 970, 1289
HpaI	GTTAAC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	1 cut(s)	712
Hpy166II	GTNNAC	9 cut(s)	15, 169, 315, 683, 829, 1049, 1102, 1184, 1217
Hpy188III	TCNNGA	6 cut(s)	275, 405, 422, 572, 1006, 1365
Hpy8I	GTNNAC	9 cut(s)	15, 169, 315, 683, 829, 1049, 1102, 1184, 1217
HpyAV	CCTTC	5 cut(s)	42, 556, 1103, 1248, 1372
HpyCH4III	ACNGT	6 cut(s)	19, 569, 833, 1221, 1399, 1490
HpyCH4IV	ACGT	3 cut(s)	6, 329, 886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	773
HpySE526I	ACGT	3 cut(s)	6, 329, 886
Hsp92II	CATG	6 cut(s)	247, 308, 375, 448, 895, 1124
HspAI	GCGC	1 cut(s)	75
KspAI	GTTAAC	1 cut(s)	315
Kzo9I	GATC	6 cut(s)	115, 1258, 1284, 1315, 1361, 1473
LmnI	GCTCC	5 cut(s)	105, 265, 817, 934, 1381
Lsp1109I	GCAGC	3 cut(s)	280, 375, 1396
LweI	GCATC	5 cut(s)	25, 88, 199, 601, 1197
MaeI	CTAG	1 cut(s)	768
MaeII	ACGT	3 cut(s)	6, 329, 886
MaeIII	GTNAC	3 cut(s)	513, 971, 1417
MalI	GATC	6 cut(s)	117, 1260, 1286, 1317, 1363, 1475
MbiI	CCGCTC	1 cut(s)	1273
MboI	GATC	6 cut(s)	115, 1258, 1284, 1315, 1361, 1473
MboII	GAAGA	5 cut(s)	497, 542, 938, 1223, 1253
MfeI	CAATTG	1 cut(s)	1197
MflI	RGATCY	3 cut(s)	1258, 1315, 1361
MhlI	GDGCHC	1 cut(s)	1309
MlyI	GAGTC	2 cut(s)	979, 1298
Mph1103I	ATGCAT	1 cut(s)	395
MroXI	GAANNNNTTC	2 cut(s)	417, 611
MseI	TTAA	7 cut(s)	219, 314, 477, 921, 944, 1043, 1167
MslI	CAYNNNNRTG	2 cut(s)	208, 956
MspA1I	CMGCKG	1 cut(s)	1460
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	1197
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	773
NdeII	GATC	6 cut(s)	115, 1258, 1284, 1315, 1361, 1473
NlaIII	CATG	6 cut(s)	247, 308, 375, 448, 895, 1124
NlaIV	GGNNCC	1 cut(s)	1341
NmuCI	GTSAC	2 cut(s)	513, 971
NsiI	ATGCAT	1 cut(s)	395
NspI	RCATGY	1 cut(s)	375
OliI	CACNNNNGTG	1 cut(s)	956
PceI	AGGCCT	1 cut(s)	1113
PciI	ACATGT	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PdmI	GAANNNNTTC	2 cut(s)	417, 611
PfeI	GAWTC	3 cut(s)	129, 401, 868
PkrI	GCNGC	3 cut(s)	270, 365, 1386
PleI	GAGTC	2 cut(s)	978, 1297
PpsI	GAGTC	2 cut(s)	978, 1297
PscI	ACATGT	1 cut(s)	371
Psp1406I	AACGTT	1 cut(s)	886
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	1341
PspPI	GGNCC	4 cut(s)	51, 565, 1092, 1409
PsuI	RGATCY	3 cut(s)	1258, 1315, 1361
PvuII	CAGCTG	1 cut(s)	1460
RsaI	GTAC	4 cut(s)	713, 1103, 1185, 1466
RsaNI	GTAC	4 cut(s)	712, 1102, 1184, 1465
RseI	CAYNNNNRTG	2 cut(s)	208, 956
SaqAI	TTAA	7 cut(s)	219, 314, 477, 921, 944, 1043, 1167
SatI	GCNGC	3 cut(s)	269, 364, 1385
Sau3AI	GATC	6 cut(s)	115, 1258, 1284, 1315, 1361, 1473
Sau96I	GGNCC	4 cut(s)	51, 565, 1092, 1409
SchI	GAGTC	2 cut(s)	979, 1298
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	1309
SfaNI	GCATC	5 cut(s)	25, 88, 199, 601, 1197
SfcI	CTRYAG	2 cut(s)	227, 657
SinI	GGWCC	2 cut(s)	565, 1092
SmiMI	CAYNNNNRTG	2 cut(s)	208, 956
SmlI	CTYRAG	2 cut(s)	985, 1480
SmoI	CTYRAG	2 cut(s)	985, 1480
SseBI	AGGCCT	1 cut(s)	1113
SsiI	CCGC	1 cut(s)	1273
SspMI	CTAG	1 cut(s)	768
StuI	AGGCCT	1 cut(s)	1113
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	2 cut(s)	503, 1095
TaaI	ACNGT	6 cut(s)	19, 569, 833, 1221, 1399, 1490
TaiI	ACGT	3 cut(s)	9, 332, 889
TaqI	TCGA	2 cut(s)	803, 1287
TatI	WGTACW	3 cut(s)	1101, 1183, 1464
TfiI	GAWTC	3 cut(s)	129, 401, 868
Tru1I	TTAA	7 cut(s)	219, 314, 477, 921, 944, 1043, 1167
Tru9I	TTAA	7 cut(s)	219, 314, 477, 921, 944, 1043, 1167
TscAI	CASTG	2 cut(s)	85, 1226
TseFI	GTSAC	2 cut(s)	513, 971
TseI	GCWGC	3 cut(s)	268, 363, 1384
Tsp45I	GTSAC	2 cut(s)	513, 971
TspDTI	ATGAA	8 cut(s)	17, 99, 293, 576, 604, 880, 1341, 1391
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	85, 1226
VpaK11BI	GGWCC	2 cut(s)	565, 1092
XapI	RAATTY	3 cut(s)	347, 1126, 1174
XceI	RCATGY	1 cut(s)	375
XmiI	GTMKAC	3 cut(s)	168, 682, 828
XmnI	GAANNNNTTC	2 cut(s)	417, 611
XspI	CTAG	1 cut(s)	768
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.