Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Forward (+)

37944123 .. 37951444

Gene Structure 7322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGTCTACGGAGTCCTCATACGTTTCGTCACCGGAGGCACCGCGGAGGCGTTCGCCGCCGCCGCCCAAATCACCTACTTCAGACACTATGGAGAAGCCCACATATGTCAGGTTTCTTGTATCAAATGCTGCAGCTGGTTCTGTTATTGGAAAGGGTGGTGCAACAATCACTGACTTTCAGTCGCAATCTGGAGCACGAATTCAGCTATCACGCAATCATGAATTTTTCCCAGGAACAACTGATAGGATTATTATGATTTCTGGAACAATAAATGAAATTCTCAAGGCTGTGGGACTTGTTCTTGAAAAGTTGCTGAATGAGCTATATTCTGAGGAAAGTGACGACGTTGAACCGAGAACAAAGCTGAGACTAATTGTTCCAAATAGTTCTTGTGGTGGGATAATTGGGAAGCAAGGATCTACAATAAAGTCATTTATTGAAGACTCACAGGCTGGGATTAAAATATCCCCTCAGGACAATAATTATTTTGGGGTAAATGACCGGCTAGTTACACTAACGGGAACTTTGGAGGAACAGATGCGGGCAGCTGATTTAATTCTTTCTAAGCTATCTGAGGACTCTCACTACACTCAGTCAATGAATGCCCCATTTTCATATCCAGGTGTTTTCTTCTCGGGTTTTCATGGTATTCCATATACATATGTGCTTCCTTCTGTGTCAACAGCAGCCTACAATGCAGTGAGCTATGGACCACCAAATGGACCATCAAATGGGGCTGCAGGAAAGTTTCAGAATAACAAGGAGGATCGGAGCAACAACTCGGTCACTATAGGTGTCGCAGATAGTCATATTGGTCTGGTTGTTGGTCGTGGTGGAAGGACTATAATGGAGATTAGTCAGGGTAGTGGGGCCAGGATAAAGATATCTGATAGGGGTGATTTCATGTCTGGAACTACTGATAGGAAAGTGACAATTACAGGGTCACAGAGGGCAATCCAAGCGGCCGAGACGATGATAATGCAGAAAGTAAACTATGCTTCTGAGAGGGCGTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

341

Amino Acids

36.58

Weight (kDa)

6.47

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	37 - 102	3.2e-15	KH domain
KH_1	PF00013	123 - 188	1.5e-14	KH domain
KH_1	PF00013	263 - 329	1.7e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	2 cut(s)	722, 734
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	46
AciI	CCGC	7 cut(s)	44, 46, 59, 62, 65, 544, 965
AclWI	GGATC	2 cut(s)	427, 777
AcoI	YGGCCR	1 cut(s)	966
AcsI	RAATTY	3 cut(s)	201, 224, 279
AcuI	CTGAAG	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	722, 734
AgsI	TTSAA	3 cut(s)	308, 353, 443
AhdI	GACNNNNNGTC	1 cut(s)	181
AjnI	CCWGG	3 cut(s)	232, 622, 875
AluBI	AGCT	7 cut(s)	137, 208, 325, 367, 551, 571, 708
AluI	AGCT	7 cut(s)	137, 208, 325, 367, 551, 571, 708
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	364, 965
AlwI	GGATC	2 cut(s)	427, 777
Ama87I	CYCGRG	1 cut(s)	637
AoxI	GGCC	2 cut(s)	873, 966
ApeKI	GCWGC	5 cut(s)	131, 134, 548, 689, 740
ApoI	RAATTY	3 cut(s)	201, 224, 279
AspS9I	GGNCC	3 cut(s)	713, 725, 873
AsuHPI	GGTGA	3 cut(s)	24, 66, 911
AvaI	CYCGRG	1 cut(s)	637
AvaII	GGWCC	2 cut(s)	713, 725
AxyI	CCTNAGG	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	5 cut(s)	118, 146, 560, 701, 727
BccI	CCATC	1 cut(s)	736
BcgI	CGANNNNNNTGC	2 cut(s)	964, 998
BciT130I	CCWGG	3 cut(s)	234, 624, 877
BcoDI	GTCTC	2 cut(s)	364, 965
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	3 cut(s)	132, 741, 792
BisI	GCNGC	9 cut(s)	59, 62, 65, 132, 135, 549, 690, 741, 966
BlsI	GCNGC	9 cut(s)	60, 63, 66, 133, 136, 550, 691, 742, 967
Bme1390I	CCNGG	3 cut(s)	234, 624, 877
Bme18I	GGWCC	2 cut(s)	713, 725
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	637
BmgT120I	GGNCC	3 cut(s)	713, 725, 873
BmiI	GGNNCC	2 cut(s)	42, 874
BmrFI	CCNGG	3 cut(s)	234, 624, 877
BmsI	GCATC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	44, 232
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	722, 734
Bse118I	RCCGGY	1 cut(s)	504
Bse21I	CCTNAGG	1 cut(s)	474
BseBI	CCWGG	3 cut(s)	234, 624, 877
BseDI	CCNNGG	2 cut(s)	44, 232
BseLI	CCNNNNNNNGG	2 cut(s)	722, 734
BseMII	CTCAG	6 cut(s)	324, 359, 488, 567, 608, 996
BseX3I	CGGCCG	1 cut(s)	966
BseXI	GCAGC	5 cut(s)	118, 146, 560, 701, 727
BseYI	CCCAGC	1 cut(s)	455
Bsh1236I	CGCG	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	969
BshFI	GGCC	2 cut(s)	875, 968
BshNI	GGYRCC	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	969
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	637
BsiSI	CCGG	2 cut(s)	35, 505
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	722, 734
BsmAI	GTCTC	2 cut(s)	364, 965
BsmBI	CGTCTC	1 cut(s)	965
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	875, 968
BsoBI	CYCGRG	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	419, 769
BspACI	CCGC	7 cut(s)	44, 46, 59, 62, 65, 544, 965
BspANI	GGCC	2 cut(s)	875, 968
BspCNI	CTCAG	6 cut(s)	325, 360, 487, 568, 607, 997
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	42, 874
BspMAI	CTGCAG	2 cut(s)	136, 745
BspPI	GGATC	2 cut(s)	427, 777
BspT107I	GGYRCC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	504
BssAI	RCCGGY	1 cut(s)	504
BssECI	CCNNGG	2 cut(s)	44, 232
BssMI	GATC	2 cut(s)	419, 769
Bst2UI	CCWGG	3 cut(s)	234, 624, 877
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	7 cut(s)	333, 368, 474, 567, 576, 594, 1005
BstDSI	CCRYGG	1 cut(s)	44
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	2 cut(s)	422, 772
BstMAI	GTCTC	2 cut(s)	364, 965
BstMBI	GATC	2 cut(s)	419, 769
BstMCI	CGRYCG	1 cut(s)	969
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 64, 322, 698, 962
BstNI	CCWGG	3 cut(s)	234, 624, 877
BstSCI	CCNGG	3 cut(s)	232, 622, 875
BstSFI	CTRYAG	3 cut(s)	132, 741, 792
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	5 cut(s)	118, 146, 560, 701, 727
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BstZI	CGGCCG	1 cut(s)	966
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	875, 968
BtgI	CCRYGG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	2 cut(s)	171, 708
Cac8I	GCNNGC	1 cut(s)	546
CciI	TCATGA	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	504
Cfr13I	GGNCC	3 cut(s)	713, 725, 873
Cfr42I	CCGCGG	1 cut(s)	47
CviAII	CATG	3 cut(s)	221, 647, 907
DdeI	CTNAG	7 cut(s)	333, 368, 474, 567, 576, 594, 1005
DpnI	GATC	2 cut(s)	421, 771
DpnII	GATC	2 cut(s)	419, 769
DriI	GACNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	966
EagI	CGGCCG	1 cut(s)	966
Eam1105I	GACNNNNNGTC	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	966
Eco32I	GATATC	1 cut(s)	888
Eco47I	GGWCC	2 cut(s)	713, 725
Eco52I	CGGCCG	1 cut(s)	966
Eco57I	CTGAAG	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	637
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	3 cut(s)	232, 622, 875
EcoRV	GATATC	1 cut(s)	888
Esp3I	CGTCTC	1 cut(s)	965
FaeI	CATG	3 cut(s)	224, 650, 910
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	3 cut(s)	220, 646, 906
FauI	CCCGC	1 cut(s)	537
FauNDI	CATATG	2 cut(s)	106, 664
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	9 cut(s)	59, 62, 65, 132, 135, 549, 690, 741, 966
Fsp4HI	GCNGC	9 cut(s)	59, 62, 65, 132, 135, 549, 690, 741, 966
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	9 cut(s)	59, 62, 65, 132, 135, 549, 690, 741, 966
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	875, 968
HapII	CCGG	2 cut(s)	35, 505
Hin1II	CATG	3 cut(s)	224, 650, 910
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	4 cut(s)	5, 14, 446, 581
HpaII	CCGG	2 cut(s)	35, 505
HphI	GGTGA	3 cut(s)	24, 66, 911
Hpy166II	GTNNAC	3 cut(s)	9, 684, 994
Hpy188I	TCNGA	7 cut(s)	85, 334, 577, 756, 774, 892, 1006
Hpy188III	TCNNGA	6 cut(s)	192, 221, 264, 305, 476, 912
Hpy8I	GTNNAC	3 cut(s)	9, 684, 994
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	684, 834
HpyCH4IV	ACGT	2 cut(s)	24, 348
HpyCH4V	TGCA	5 cut(s)	134, 164, 701, 743, 985
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 64, 322, 698, 962
HpyF3I	CTNAG	7 cut(s)	333, 368, 474, 567, 576, 594, 1005
HpySE526I	ACGT	2 cut(s)	24, 348
Hsp92II	CATG	3 cut(s)	224, 650, 910
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	419, 769
LmnI	GCTCC	2 cut(s)	194, 774
Lsp1109I	GCAGC	5 cut(s)	118, 146, 560, 701, 727
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	2 cut(s)	24, 348
MaeIII	GTNAC	6 cut(s)	30, 341, 511, 787, 931, 945
MalI	GATC	2 cut(s)	421, 771
MboI	GATC	2 cut(s)	419, 769
MboII	GAAGA	2 cut(s)	455, 625
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	8 cut(s)	201, 224, 279, 375, 405, 484, 558, 936
MlyI	GAGTC	4 cut(s)	14, 23, 440, 575
MmeI	TCCRAC	1 cut(s)	996
MseI	TTAA	2 cut(s)	462, 557
MspA1I	CMGCKG	3 cut(s)	46, 137, 551
MspI	CCGG	2 cut(s)	35, 505
MspR9I	CCNGG	3 cut(s)	234, 624, 877
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	3 cut(s)	234, 624, 877
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	5 cut(s)	58, 64, 322, 698, 962
NdeI	CATATG	2 cut(s)	106, 664
NdeII	GATC	2 cut(s)	419, 769
NlaIII	CATG	3 cut(s)	224, 650, 910
NlaIV	GGNNCC	2 cut(s)	42, 874
NmeAIII	GCCGAG	1 cut(s)	994
NmuCI	GTSAC	5 cut(s)	30, 341, 787, 931, 945
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	610
PflMI	CCANNNNNTGG	2 cut(s)	722, 734
PkrI	GCNGC	9 cut(s)	60, 63, 66, 133, 136, 550, 691, 742, 967
PleI	GAGTC	4 cut(s)	13, 22, 440, 575
PpsI	GAGTC	4 cut(s)	13, 22, 440, 575
Psp6I	CCWGG	3 cut(s)	232, 622, 875
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	3 cut(s)	232, 622, 875
PspN4I	GGNNCC	2 cut(s)	42, 874
PspPI	GGNCC	3 cut(s)	713, 725, 873
PstI	CTGCAG	2 cut(s)	136, 745
PsuI	RGATCY	1 cut(s)	419
PvuII	CAGCTG	2 cut(s)	137, 551
SacII	CCGCGG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	462, 557
SatI	GCNGC	9 cut(s)	59, 62, 65, 132, 135, 549, 690, 741, 966
Sau3AI	GATC	2 cut(s)	419, 769
Sau96I	GGNCC	3 cut(s)	713, 725, 873
SchI	GAGTC	4 cut(s)	14, 23, 440, 575
ScrFI	CCNGG	3 cut(s)	234, 624, 877
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	531
SfcI	CTRYAG	3 cut(s)	132, 741, 792
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	713, 725
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	8 cut(s)	201, 224, 279, 375, 405, 484, 558, 936
SsiI	CCGC	7 cut(s)	44, 46, 59, 62, 65, 544, 965
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	3 cut(s)	232, 622, 875
TaiI	ACGT	2 cut(s)	27, 351
TaqII	GACCGA	1 cut(s)	775
TasI	AATT	8 cut(s)	201, 224, 279, 375, 405, 484, 558, 936
TauI	GCSGC	4 cut(s)	61, 64, 67, 968
Tru1I	TTAA	2 cut(s)	462, 557
Tru9I	TTAA	2 cut(s)	462, 557
TscAI	CASTG	2 cut(s)	178, 708
TseFI	GTSAC	5 cut(s)	30, 341, 787, 931, 945
TseI	GCWGC	5 cut(s)	131, 134, 548, 689, 740
Tsp45I	GTSAC	5 cut(s)	30, 341, 787, 931, 945
TspDTI	ATGAA	6 cut(s)	237, 291, 606, 617, 635, 895
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	178, 708
Van91I	CCANNNNNTGG	2 cut(s)	722, 734
VpaK11BI	GGWCC	2 cut(s)	713, 725
XapI	RAATTY	3 cut(s)	201, 224, 279
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.