Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Reverse (-)

26409184 .. 26416377

Gene Structure 7194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGTCCACGGAGTCCTCATACGTTTCGTCACCGGAGGCACCGCGGAGGCGTTCGTCGCCGCCGCCGCCCAAATCACCTACTTCAGACACTATGGAGAAGCCCACATATGTCAGGTTTCTTGTATCAAATGCTGCAGCTGGTTCTGTTATTGGAAAGGGTGGTGCAACAATCACTGACTTTCAGTCGCAATCTGGAGCACGAATTCAGCTATCACGCAATCATGAATTTTTCCCAGGAACAACTGATAGGATTATTATGATTTCTGGAACAATAAATGAAATTCTCAAGGCTGTGGAACTTGTTCTTACTAAGTTGCTCAATGAGCTATATTCTGAGGAAAGTGACGACGTTGAACCGAGAACAAAGCTGAGACTAATTGTTCCAAATAGTTCTTGTGGTGGGATAATTGGGAAGCAAGGATCTACAATAAAGTCATTTATTGAAGACTCACAGGCTGGGATTAAAATATCACCTCAGGACAATAATTATTTTGGGGTAAATGACCGGCTAGTTACACTAACAGGAACTTTGGAGGAACAGATGCGGGCAGCTGATTTAATTCTTTCTAAGCTATCTGAGGACTCTCACTACACTCAGTCAATGAATGCCCCATTTTCATATCCAGGTGTTTTCTTCTCGGGTTTTCATGGTATTCCATATACATATGTGCTTCCTTCTGTGTCAACAGCAGCCTACAATACAGTGAGCTACGCACCACCGAATGGACCATCGAATGGGGCTGCAGGAAAGTTTCAGAATAACAAGGAGGATCGGAGCAACAACTCGGTCACTATAGGTGTTGCAGATAGTCATATTGGTCTGGTTGTTGGTCGTGGTGGAAGGACTATAATGGAGATTAGTCAGGGTAGTGGGGCCAGGATAAAGATATCTGATAGGGGTGATTTCATGTCTGGAACTACTGATAGGAAAGTGACAATTACAGGGTCACAGAGGGCAATCCAAGCGGCCGAGACGATGATAATGCAGAAAGTAAACTATGCTTCTGAGAGGGCGTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

341

Amino Acids

36.75

Weight (kDa)

6.47

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	38 - 103	1.4e-15	KH domain
KH_1	PF00013	124 - 189	1.5e-14	KH domain
KH_1	PF00013	264 - 330	1.8e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	2 cut(s)	725, 737
AccII	CGCG	1 cut(s)	46
AciI	CCGC	7 cut(s)	44, 46, 62, 65, 68, 547, 968
AclWI	GGATC	2 cut(s)	430, 780
AcoI	YGGCCR	1 cut(s)	969
AcsI	RAATTY	3 cut(s)	204, 227, 282
AcuI	CTGAAG	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	725, 737
AgsI	TTSAA	2 cut(s)	356, 446
AhdI	GACNNNNNGTC	1 cut(s)	184
AjnI	CCWGG	3 cut(s)	235, 625, 878
AluBI	AGCT	7 cut(s)	140, 211, 328, 370, 554, 574, 711
AluI	AGCT	7 cut(s)	140, 211, 328, 370, 554, 574, 711
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	367, 968
AlwI	GGATC	2 cut(s)	430, 780
Ama87I	CYCGRG	1 cut(s)	640
AoxI	GGCC	2 cut(s)	876, 969
ApeKI	GCWGC	5 cut(s)	134, 137, 551, 692, 743
ApoI	RAATTY	3 cut(s)	204, 227, 282
Asp700I	GAANNNNTTC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	728, 876
AsuHPI	GGTGA	4 cut(s)	24, 69, 465, 914
AvaI	CYCGRG	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	728
AxyI	CCTNAGG	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	5 cut(s)	121, 149, 563, 704, 730
BccI	CCATC	1 cut(s)	739
BcgI	CGANNNNNNTGC	2 cut(s)	967, 1001
BciT130I	CCWGG	3 cut(s)	237, 627, 880
BcoDI	GTCTC	2 cut(s)	367, 968
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	3 cut(s)	135, 744, 795
BisI	GCNGC	9 cut(s)	62, 65, 68, 135, 138, 552, 693, 744, 969
BlsI	GCNGC	9 cut(s)	63, 66, 69, 136, 139, 553, 694, 745, 970
Bme1390I	CCNGG	3 cut(s)	237, 627, 880
Bme18I	GGWCC	1 cut(s)	728
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	640
BmgT120I	GGNCC	2 cut(s)	728, 876
BmiI	GGNNCC	2 cut(s)	42, 877
BmrFI	CCNGG	3 cut(s)	237, 627, 880
BmsI	GCATC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	9, 44, 235
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	725, 737
Bse118I	RCCGGY	1 cut(s)	507
Bse21I	CCTNAGG	1 cut(s)	477
BseBI	CCWGG	3 cut(s)	237, 627, 880
BseDI	CCNNGG	3 cut(s)	9, 44, 235
BseLI	CCNNNNNNNGG	2 cut(s)	725, 737
BseMII	CTCAG	6 cut(s)	327, 362, 491, 570, 611, 999
BseX3I	CGGCCG	1 cut(s)	969
BseXI	GCAGC	5 cut(s)	121, 149, 563, 704, 730
BseYI	CCCAGC	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	972
BshFI	GGCC	2 cut(s)	878, 971
BshNI	GGYRCC	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	640
BsiSI	CCGG	2 cut(s)	35, 508
BslI	CCNNNNNNNGG	2 cut(s)	725, 737
BsmAI	GTCTC	2 cut(s)	367, 968
BsmBI	CGTCTC	1 cut(s)	968
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	878, 971
BsoBI	CYCGRG	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	422, 772
BspACI	CCGC	7 cut(s)	44, 46, 62, 65, 68, 547, 968
BspANI	GGCC	2 cut(s)	878, 971
BspCNI	CTCAG	6 cut(s)	328, 363, 490, 571, 610, 1000
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	42, 877
BspMAI	CTGCAG	2 cut(s)	139, 748
BspPI	GGATC	2 cut(s)	430, 780
BspT107I	GGYRCC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	507
BssECI	CCNNGG	3 cut(s)	9, 44, 235
BssMI	GATC	2 cut(s)	422, 772
Bst2UI	CCWGG	3 cut(s)	237, 627, 880
Bst4CI	ACNGT	1 cut(s)	706
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	8 cut(s)	312, 336, 371, 477, 570, 579, 597, 1008
BstDSI	CCRYGG	2 cut(s)	9, 44
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	2 cut(s)	425, 775
BstMAI	GTCTC	2 cut(s)	367, 968
BstMBI	GATC	2 cut(s)	422, 772
BstMCI	CGRYCG	1 cut(s)	972
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 67, 325, 965
BstNI	CCWGG	3 cut(s)	237, 627, 880
BstSCI	CCNGG	3 cut(s)	235, 625, 878
BstSFI	CTRYAG	3 cut(s)	135, 744, 795
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	5 cut(s)	121, 149, 563, 704, 730
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BstZI	CGGCCG	1 cut(s)	969
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	878, 971
BtgI	CCRYGG	2 cut(s)	9, 44
BtsIMutI	CAGTG	2 cut(s)	174, 711
Cac8I	GCNNGC	1 cut(s)	549
CciI	TCATGA	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	507
Cfr13I	GGNCC	2 cut(s)	728, 876
Cfr42I	CCGCGG	1 cut(s)	47
CviAII	CATG	3 cut(s)	224, 650, 910
DdeI	CTNAG	8 cut(s)	312, 336, 371, 477, 570, 579, 597, 1008
DpnI	GATC	2 cut(s)	424, 774
DpnII	GATC	2 cut(s)	422, 772
DriI	GACNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	969
EagI	CGGCCG	1 cut(s)	969
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EclXI	CGGCCG	1 cut(s)	969
Eco32I	GATATC	1 cut(s)	891
Eco47I	GGWCC	1 cut(s)	728
Eco52I	CGGCCG	1 cut(s)	969
Eco57I	CTGAAG	1 cut(s)	69
Eco81I	CCTNAGG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	640
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	3 cut(s)	235, 625, 878
EcoRV	GATATC	1 cut(s)	891
Esp3I	CGTCTC	1 cut(s)	968
FaeI	CATG	3 cut(s)	227, 653, 913
FatI	CATG	3 cut(s)	223, 649, 909
FauI	CCCGC	1 cut(s)	540
FauNDI	CATATG	2 cut(s)	109, 667
Fnu4HI	GCNGC	9 cut(s)	62, 65, 68, 135, 138, 552, 693, 744, 969
Fsp4HI	GCNGC	9 cut(s)	62, 65, 68, 135, 138, 552, 693, 744, 969
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	9 cut(s)	62, 65, 68, 135, 138, 552, 693, 744, 969
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	878, 971
HapII	CCGG	2 cut(s)	35, 508
Hin1II	CATG	3 cut(s)	227, 653, 913
HincII	GTYRAC	1 cut(s)	687
HindII	GTYRAC	1 cut(s)	687
HinfI	GANTC	4 cut(s)	5, 14, 449, 584
HpaII	CCGG	2 cut(s)	35, 508
HphI	GGTGA	4 cut(s)	24, 69, 465, 914
Hpy166II	GTNNAC	3 cut(s)	9, 687, 997
Hpy188I	TCNGA	7 cut(s)	88, 337, 580, 759, 777, 895, 1009
Hpy188III	TCNNGA	5 cut(s)	195, 224, 267, 479, 915
Hpy8I	GTNNAC	3 cut(s)	9, 687, 997
Hpy99I	CGWCG	2 cut(s)	61, 353
HpyAV	CCTTC	2 cut(s)	687, 837
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	2 cut(s)	24, 351
HpyCH4V	TGCA	5 cut(s)	137, 167, 746, 806, 988
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 67, 325, 965
HpyF3I	CTNAG	8 cut(s)	312, 336, 371, 477, 570, 579, 597, 1008
HpySE526I	ACGT	2 cut(s)	24, 351
Hsp92II	CATG	3 cut(s)	227, 653, 913
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	422, 772
LmnI	GCTCC	2 cut(s)	197, 777
Lsp1109I	GCAGC	5 cut(s)	121, 149, 563, 704, 730
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	2 cut(s)	24, 351
MaeIII	GTNAC	6 cut(s)	30, 344, 514, 790, 934, 948
MalI	GATC	2 cut(s)	424, 774
MboI	GATC	2 cut(s)	422, 772
MboII	GAAGA	2 cut(s)	458, 628
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	8 cut(s)	204, 227, 282, 378, 408, 487, 561, 939
MlyI	GAGTC	4 cut(s)	14, 23, 443, 578
MmeI	TCCRAC	1 cut(s)	999
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	2 cut(s)	465, 560
MspA1I	CMGCKG	3 cut(s)	46, 140, 554
MspI	CCGG	2 cut(s)	35, 508
MspR9I	CCNGG	3 cut(s)	237, 627, 880
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	3 cut(s)	237, 627, 880
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	58, 67, 325, 965
NdeI	CATATG	2 cut(s)	109, 667
NdeII	GATC	2 cut(s)	422, 772
NlaIII	CATG	3 cut(s)	227, 653, 913
NlaIV	GGNNCC	2 cut(s)	42, 877
NmeAIII	GCCGAG	1 cut(s)	997
NmuCI	GTSAC	5 cut(s)	30, 344, 790, 934, 948
PagI	TCATGA	1 cut(s)	223
PctI	GAATGC	1 cut(s)	613
PdmI	GAANNNNTTC	1 cut(s)	303
PflMI	CCANNNNNTGG	2 cut(s)	725, 737
PkrI	GCNGC	9 cut(s)	63, 66, 69, 136, 139, 553, 694, 745, 970
PleI	GAGTC	4 cut(s)	13, 22, 443, 578
PpsI	GAGTC	4 cut(s)	13, 22, 443, 578
Psp6I	CCWGG	3 cut(s)	235, 625, 878
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	3 cut(s)	235, 625, 878
PspN4I	GGNNCC	2 cut(s)	42, 877
PspPI	GGNCC	2 cut(s)	728, 876
PstI	CTGCAG	2 cut(s)	139, 748
PsuI	RGATCY	1 cut(s)	422
PvuII	CAGCTG	2 cut(s)	140, 554
SacII	CCGCGG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	465, 560
SatI	GCNGC	9 cut(s)	62, 65, 68, 135, 138, 552, 693, 744, 969
Sau3AI	GATC	2 cut(s)	422, 772
Sau96I	GGNCC	2 cut(s)	728, 876
SchI	GAGTC	4 cut(s)	14, 23, 443, 578
ScrFI	CCNGG	3 cut(s)	237, 627, 880
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	3 cut(s)	135, 744, 795
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	8 cut(s)	204, 227, 282, 378, 408, 487, 561, 939
SsiI	CCGC	7 cut(s)	44, 46, 62, 65, 68, 547, 968
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	3 cut(s)	235, 625, 878
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	2 cut(s)	27, 354
TaqI	TCGA	1 cut(s)	734
TaqII	GACCGA	1 cut(s)	778
TasI	AATT	8 cut(s)	204, 227, 282, 378, 408, 487, 561, 939
TauI	GCSGC	4 cut(s)	64, 67, 70, 971
Tru1I	TTAA	2 cut(s)	465, 560
Tru9I	TTAA	2 cut(s)	465, 560
TscAI	CASTG	2 cut(s)	181, 711
TseFI	GTSAC	5 cut(s)	30, 344, 790, 934, 948
TseI	GCWGC	5 cut(s)	134, 137, 551, 692, 743
Tsp45I	GTSAC	5 cut(s)	30, 344, 790, 934, 948
TspDTI	ATGAA	6 cut(s)	240, 294, 609, 620, 638, 898
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	181, 711
Van91I	CCANNNNNTGG	2 cut(s)	725, 737
VpaK11BI	GGWCC	1 cut(s)	728
XapI	RAATTY	3 cut(s)	204, 227, 282
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.