Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Reverse (-)

7058386 .. 7064608

Gene Structure 6223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1074100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGTCCACTGAGTCCTCCTACATGTCGTCACCGGAAGCCCCACGGAGGCGCTCATCGCCGCCGCCGCCGCCGCCCAAATCACCGGGTTCGGATTCTGCGGAGAAGCCTACATATGTTAGGTTTCTGGTGTCAAATGCTGCAGCTGGTTCTGTTATTGGAAAGGGTGGTGCAACAATCACTGATTTTCAATCGCAATCTGGAGCAAGAATTCAGTTGTCGCGCAATCATGAGTTTTTTCCCGGAACAACTGATAGGATTATTATGATTTCTGGAACAATTAATGAAATAGTCAAGGCTGTGGACCTTGTTCTTGCTAAGTTACTGAGTGAGCTTCATTCTGAAGAAACTGAAGAAGTGGAACCAAGAACAAAGCTGAGATTAGTTGTTCCAAATAGTTCTTGTGGTGGCATAATTGGGAAAGGAGGGTCTACCATAAAGTCATTTATTGAAGAATCACAAGCTGGAATTAAAATATCACCACAAGACAATAATTATTTTGGGTTGAACGATCGGCTGGTGACGATAACAGGAAGTCTGGATGAACAGATGCGAGCAGTTGATTTAATTGTTTCTAAGTTATCTGAAGACTCGCATTATGCTCAGTCTATGAATGCCCCATTTTCATATCCAGCAGCGTACAATGCAATGAGCTATGGACCACCAAATGGGACTGGAGGAAAATTTCAGAATGCTAAGGAGGATTGGAGTAACTCGGTCACAATTGGCGTAGCGGACGAGCATATCGGGTTGGTTCTTGGTCGTGGTGGAAGGACCATAGCGGAGATTAGTCAGGGTAGTGGAGCCAAGATAAAGATATCTGATAGGGGTGACTTCATGTCTGGAACTACTGACAGGAAGGTGACAATCACGGGGTCACAGAGGGCAATCCGTGCTGCTGAGTCCATGATAATGCAGAAAGTATCCTATGCATCCGAGAGGGCAATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

318

Amino Acids

33.93

Weight (kDa)

6.16

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	40 - 105	1.7e-15	KH domain
KH_1	PF00013	126 - 190	1.4e-15	KH domain
KH_1	PF00013	240 - 306	1.2e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	1 cut(s)	223
AciI	CCGC	8 cut(s)	62, 65, 68, 71, 74, 101, 734, 782
AcsI	RAATTY	2 cut(s)	210, 683
AcuI	CTGAAG	3 cut(s)	363, 372, 606
AfaI	GTAC	1 cut(s)	641
AfiI	CCNNNNNNNGG	2 cut(s)	48, 668
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	191, 452, 508
AhdI	GACNNNNNGTC	1 cut(s)	838
AluBI	AGCT	5 cut(s)	146, 334, 376, 464, 654
AluI	AGCT	5 cut(s)	146, 334, 376, 464, 654
ApeKI	GCWGC	4 cut(s)	140, 143, 635, 896
ApoI	RAATTY	2 cut(s)	210, 683
AseI	ATTAAT	1 cut(s)	282
AspLEI	GCGC	2 cut(s)	54, 225
AspS9I	GGNCC	3 cut(s)	304, 659, 774
AsuC2I	CCSGG	2 cut(s)	87, 243
AsuHPI	GGTGA	6 cut(s)	24, 75, 471, 532, 842, 874
AvaII	GGWCC	3 cut(s)	304, 659, 774
BbsI	GAAGAC	1 cut(s)	594
BbvI	GCAGC	4 cut(s)	127, 155, 647, 883
BciVI	GTATCC	1 cut(s)	934
BcnI	CCSGG	2 cut(s)	87, 243
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	934
BisI	GCNGC	9 cut(s)	62, 65, 68, 71, 74, 141, 144, 636, 897
BlsI	GCNGC	9 cut(s)	63, 66, 69, 72, 75, 142, 145, 637, 898
Bme1390I	CCNGG	2 cut(s)	87, 243
Bme18I	GGWCC	3 cut(s)	304, 659, 774
BmeRI	GACNNNNNGTC	1 cut(s)	838
BmgT120I	GGNCC	3 cut(s)	304, 659, 774
BmiI	GGNNCC	2 cut(s)	363, 805
BmrFI	CCNGG	2 cut(s)	87, 243
BmsI	GCATC	2 cut(s)	540, 941
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	2 cut(s)	222, 696
Bpu10I	CCTNAGC	1 cut(s)	696
BpuMI	CCSGG	2 cut(s)	87, 243
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 668
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	2 cut(s)	654, 951
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	547, 932
BseLI	CCNNNNNNNGG	2 cut(s)	48, 668
BseMI	GCAATG	2 cut(s)	654, 951
BseMII	CTCAG	4 cut(s)	317, 368, 617, 891
BseNI	ACTGG	1 cut(s)	679
BseXI	GCAGC	4 cut(s)	127, 155, 647, 883
Bsh1236I	CGCG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	514
BsiEI	CGRYCG	1 cut(s)	514
BsiSI	CCGG	3 cut(s)	35, 86, 243
BslFI	GGGAC	1 cut(s)	685
BslI	CCNNNNNNNGG	2 cut(s)	48, 668
BsmFI	GGGAC	1 cut(s)	685
BsmI	GAATGC	2 cut(s)	619, 697
Bsp143I	GATC	1 cut(s)	511
BspACI	CCGC	8 cut(s)	62, 65, 68, 71, 74, 101, 734, 782
BspCNI	CTCAG	5 cut(s)	4, 318, 369, 616, 892
BspFNI	CGCG	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	363, 805
BspMAI	CTGCAG	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	654, 951
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	511
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	8 cut(s)	12, 318, 326, 377, 576, 603, 696, 900
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	547, 932
BstFNI	CGCG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 225
BstKTI	GATC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	511
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 67, 70, 73, 644, 893
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	85, 241
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	4 cut(s)	127, 155, 647, 883
BstV2I	GAAGAC	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	934
BtgI	CCRYGG	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	547, 932
BtsIMutI	CAGTG	2 cut(s)	9, 180
Cac8I	GCNNGC	1 cut(s)	555
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	2 cut(s)	54, 225
Cfr13I	GGNCC	3 cut(s)	304, 659, 774
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	4 cut(s)	25, 230, 838, 907
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	8 cut(s)	12, 318, 326, 377, 576, 603, 696, 900
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
DriI	GACNNNNNGTC	1 cut(s)	838
Eam1105I	GACNNNNNGTC	1 cut(s)	838
Eco32I	GATATC	1 cut(s)	819
Eco47I	GGWCC	3 cut(s)	304, 659, 774
Eco57I	CTGAAG	3 cut(s)	363, 372, 606
EcoRI	GAATTC	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	819
EcoT22I	ATGCAT	1 cut(s)	934
FaeI	CATG	4 cut(s)	28, 233, 841, 910
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	4 cut(s)	24, 229, 837, 906
FauNDI	CATATG	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	9 cut(s)	62, 65, 68, 71, 74, 141, 144, 636, 897
FokI	GGATG	2 cut(s)	554, 919
Fsp4HI	GCNGC	9 cut(s)	62, 65, 68, 71, 74, 141, 144, 636, 897
GlaI	GCGC	2 cut(s)	53, 224
GluI	GCNGC	9 cut(s)	62, 65, 68, 71, 74, 141, 144, 636, 897
GsuI	CTGGAG	2 cut(s)	222, 696
HaeII	RGCGCY	1 cut(s)	55
HapII	CCGG	3 cut(s)	35, 86, 243
HhaI	GCGC	2 cut(s)	54, 225
Hin1II	CATG	4 cut(s)	28, 233, 841, 910
Hin6I	GCGC	2 cut(s)	52, 223
HinP1I	GCGC	2 cut(s)	52, 223
HinfI	GANTC	6 cut(s)	5, 14, 95, 455, 590, 902
HpaII	CCGG	3 cut(s)	35, 86, 243
HphI	GGTGA	6 cut(s)	24, 75, 471, 532, 842, 874
Hpy166II	GTNNAC	3 cut(s)	9, 304, 432
Hpy188I	TCNGA	6 cut(s)	94, 343, 586, 690, 823, 937
Hpy188III	TCNNGA	5 cut(s)	201, 230, 273, 539, 843
Hpy8I	GTNNAC	3 cut(s)	9, 304, 432
HpyAV	CCTTC	2 cut(s)	765, 853
HpyCH4V	TGCA	5 cut(s)	143, 173, 647, 916, 932
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 67, 70, 73, 644, 893
HpyF3I	CTNAG	8 cut(s)	12, 318, 326, 377, 576, 603, 696, 900
Hsp92II	CATG	4 cut(s)	28, 233, 841, 910
HspAI	GCGC	2 cut(s)	52, 223
Kzo9I	GATC	1 cut(s)	511
LmnI	GCTCC	2 cut(s)	203, 803
Lsp1109I	GCAGC	4 cut(s)	127, 155, 647, 883
LweI	GCATC	2 cut(s)	540, 941
MaeIII	GTNAC	8 cut(s)	30, 321, 520, 710, 718, 830, 862, 876
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	4 cut(s)	356, 365, 464, 599
MfeI	CAATTG	1 cut(s)	723
MluCI	AATT	8 cut(s)	210, 279, 414, 468, 493, 567, 683, 723
MlyI	GAGTC	4 cut(s)	14, 23, 584, 911
MnlI	CCTC	7 cut(s)	28, 42, 419, 671, 694, 876, 933
Mph1103I	ATGCAT	1 cut(s)	934
MseI	TTAA	4 cut(s)	282, 471, 566, 952
MslI	CAYNNNNRTG	1 cut(s)	911
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	3 cut(s)	35, 86, 243
MspR9I	CCNGG	2 cut(s)	87, 243
MunI	CAATTG	1 cut(s)	723
Mva1269I	GAATGC	2 cut(s)	619, 697
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	6 cut(s)	58, 67, 70, 73, 644, 893
NciI	CCSGG	2 cut(s)	87, 243
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	1 cut(s)	511
NlaIII	CATG	4 cut(s)	28, 233, 841, 910
NlaIV	GGNNCC	2 cut(s)	363, 805
NmuCI	GTSAC	6 cut(s)	30, 520, 718, 830, 862, 876
NsiI	ATGCAT	1 cut(s)	934
NspI	RCATGY	1 cut(s)	28
PagI	TCATGA	1 cut(s)	229
PciI	ACATGT	1 cut(s)	24
PctI	GAATGC	2 cut(s)	619, 697
PfeI	GAWTC	2 cut(s)	95, 455
PflMI	CCANNNNNTGG	1 cut(s)	668
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	9 cut(s)	63, 66, 69, 72, 75, 142, 145, 637, 898
Ple19I	CGATCG	1 cut(s)	514
PleI	GAGTC	4 cut(s)	13, 22, 584, 910
PpsI	GAGTC	4 cut(s)	13, 22, 584, 910
PscI	ACATGT	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	363, 805
PspPI	GGNCC	3 cut(s)	304, 659, 774
PstI	CTGCAG	1 cut(s)	145
PvuI	CGATCG	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	911
SaqAI	TTAA	4 cut(s)	282, 471, 566, 952
SatI	GCNGC	9 cut(s)	62, 65, 68, 71, 74, 141, 144, 636, 897
Sau3AI	GATC	1 cut(s)	511
Sau96I	GGNCC	3 cut(s)	304, 659, 774
SchI	GAGTC	4 cut(s)	14, 23, 584, 911
ScrFI	CCNGG	2 cut(s)	87, 243
SetI	ASST	8 cut(s)	125, 148, 309, 336, 378, 466, 656, 864
SfaNI	GCATC	2 cut(s)	540, 941
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	3 cut(s)	304, 659, 774
SmiMI	CAYNNNNRTG	1 cut(s)	911
Sse9I	AATT	8 cut(s)	210, 279, 414, 468, 493, 567, 683, 723
SsiI	CCGC	8 cut(s)	62, 65, 68, 71, 74, 101, 734, 782
StyD4I	CCNGG	2 cut(s)	85, 241
TaqII	GACCGA	1 cut(s)	706
TasI	AATT	8 cut(s)	210, 279, 414, 468, 493, 567, 683, 723
TauI	GCSGC	5 cut(s)	64, 67, 70, 73, 76
TfiI	GAWTC	2 cut(s)	95, 455
Tru1I	TTAA	4 cut(s)	282, 471, 566, 952
Tru9I	TTAA	4 cut(s)	282, 471, 566, 952
TscAI	CASTG	2 cut(s)	16, 187
TseFI	GTSAC	6 cut(s)	30, 520, 718, 830, 862, 876
TseI	GCWGC	4 cut(s)	140, 143, 635, 896
Tsp45I	GTSAC	6 cut(s)	30, 520, 718, 830, 862, 876
TspDTI	ATGAA	6 cut(s)	300, 326, 558, 615, 626, 826
TspGWI	ACGGA	2 cut(s)	61, 881
TspRI	CASTG	2 cut(s)	16, 187
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	3 cut(s)	304, 659, 774
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	2 cut(s)	210, 683
XceI	RCATGY	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.