Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Forward (+)

21104125 .. 21104835

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGGCGGCGATCCAGAAGAAAACAGAGTCGCTCCAGTACTGGAGGGATTTCTTTGCCACTGCAAACAACTCCACCATTTTCGATATTCTCGACCACGCCATCACCGTCGCCGCCTCTGATTTCCCGGAGGAGTTCACTCGCCAGAGGACTCGAATTCTCGATTCGATTCAAGGTTTGGGTATGGGTTTGGGTTCGGGCGGCGGTTCTGATCTAGGGTTTTGTGCGGGTGCTGCATCTGAAAGTACTGGGTCCGATCAAAATCAAAAGGCTGAGCAGCCCTCAAAGCCATCGCTCAAAATACGCGTAAAGATCGTGAAGCGAAATGCTGATGGTACCTTGATCGAACCCAGTTCAGATGAAGCGAAATTGATCAAGCCCTGTTCTCATCTGATCAAGCCCCCACCCTGTGTTGGTGATCAAGCAAAATCGATCAAGCCCTGTTCTCATCTGATCAAGCCCCCACCCTGTGTTGGTGATCAAGCTAAATCGATCAAGCCAAAGCCGTGTTTGGATGAAGCGGCAATTGAGGCAAAGCTTCAGGCCACAAAGAGAAAGCTTCATGATCGATATCAAGAAATTGAGAACAATAAGAGGCAGAGGAGGATACAAGTCTTAAACCATCTTCCCAACCAAGACTTCAAGATTCGATGCACTGCTAAACCCAAACTTGGAAACCATTGGAAACCAGTACTAAAAATCAGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

236

Amino Acids

26.06

Weight (kDa)

9.51

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	335
AccII	CGCG	1 cut(s)	306
AciI	CCGC	7 cut(s)	5, 8, 114, 201, 204, 227, 521
AclWI	GGATC	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	524
AdeI	CACNNNGTG	2 cut(s)	410, 470
AfaI	GTAC	4 cut(s)	41, 247, 337, 693
AfiI	CCNNNNNNNGG	3 cut(s)	413, 473, 671
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	173, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	3 cut(s)	485, 538, 559
AluI	AGCT	3 cut(s)	485, 538, 559
AlwI	GGATC	1 cut(s)	7
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	2 cut(s)	233, 277
ApoI	RAATTY	1 cut(s)	156
Asp718I	GGTACC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	252
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	97, 428, 488
AvaII	GGWCC	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	220, 289
BccI	CCATC	4 cut(s)	110, 298, 326, 630
BceAI	ACGGC	1 cut(s)	490
BciVI	GTATCC	1 cut(s)	600
BclI	TGATCA	5 cut(s)	372, 393, 418, 453, 478
BcnI	CCSGG	1 cut(s)	128
BfaI	CTAG	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	600
BisI	GCNGC	7 cut(s)	6, 9, 114, 202, 234, 278, 522
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	7 cut(s)	7, 10, 115, 203, 235, 279, 523
BmcAI	AGTACT	3 cut(s)	41, 247, 693
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	2 cut(s)	253, 337
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	2 cut(s)	258, 345
BmsI	GCATC	2 cut(s)	245, 641
BmuI	ACTGGG	2 cut(s)	258, 345
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	2 cut(s)	20, 64
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	3 cut(s)	431, 491, 568
BsaBI	GATNNNNATC	2 cut(s)	261, 570
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 473, 671
Bse1I	ACTGG	5 cut(s)	37, 47, 253, 351, 689
Bse8I	GATNNNNATC	2 cut(s)	261, 570
BseCI	ATCGAT	3 cut(s)	431, 491, 568
BseGI	GGATG	1 cut(s)	520
BseJI	GATNNNNATC	2 cut(s)	261, 570
BseLI	CCNNNNNNNGG	3 cut(s)	413, 473, 671
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	5 cut(s)	37, 47, 253, 351, 689
BseRI	GAGGAG	2 cut(s)	146, 616
BseXI	GCAGC	2 cut(s)	220, 289
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	545
BshNI	GGYRCC	1 cut(s)	335
BshVI	ATCGAT	3 cut(s)	431, 491, 568
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	413, 473, 671
BsnI	GGCC	1 cut(s)	545
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	7 cut(s)	5, 8, 114, 201, 204, 227, 521
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	3 cut(s)	431, 491, 568
BspFNI	CGCG	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	2 cut(s)	253, 337
BspPI	GGATC	1 cut(s)	7
BspT107I	GGYRCC	1 cut(s)	335
BsrI	ACTGG	5 cut(s)	37, 47, 253, 351, 689
Bst4CI	ACNGT	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 286, 530
BstSCI	CCNGG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	220, 289
Bsu15I	ATCGAT	3 cut(s)	431, 491, 568
BsuI	GTATCC	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	545
BsuTUI	ATCGAT	3 cut(s)	431, 491, 568
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	520
BtsI	GCAGTG	2 cut(s)	60, 654
BtsIMutI	CAGTG	2 cut(s)	60, 654
CciI	TCATGA	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	252
ClaI	ATCGAT	3 cut(s)	431, 491, 568
Csp6I	GTAC	4 cut(s)	40, 246, 336, 692
CviAII	CATG	1 cut(s)	563
CviQI	GTAC	4 cut(s)	40, 246, 336, 692
DdeI	CTNAG	1 cut(s)	273
DraIII	CACNNNGTG	2 cut(s)	410, 470
Eco32I	GATATC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	572
FaeI	CATG	1 cut(s)	566
FaiI	YATR	3 cut(s)	185, 564, 709
FatI	CATG	1 cut(s)	562
FauI	CCCGC	1 cut(s)	220
FbaI	TGATCA	5 cut(s)	372, 393, 418, 453, 478
Fnu4HI	GCNGC	7 cut(s)	6, 9, 114, 202, 234, 278, 522
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	7 cut(s)	6, 9, 114, 202, 234, 278, 522
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	7 cut(s)	6, 9, 114, 202, 234, 278, 522
GsuI	CTGGAG	2 cut(s)	20, 64
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	1 cut(s)	566
HindIII	AAGCTT	2 cut(s)	536, 557
HinfI	GANTC	5 cut(s)	29, 151, 164, 169, 646
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	3 cut(s)	97, 428, 488
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	8 cut(s)	121, 211, 241, 256, 358, 393, 453, 704
Hpy188III	TCNNGA	7 cut(s)	16, 92, 161, 316, 563, 575, 643
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	65, 236, 654
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 286, 530
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	566
KpnI	GGTACC	1 cut(s)	339
Ksp22I	TGATCA	5 cut(s)	372, 393, 418, 453, 478
LmnI	GCTCC	1 cut(s)	39
Lsp1109I	GCAGC	2 cut(s)	220, 289
LweI	GCATC	2 cut(s)	245, 641
MaeI	CTAG	1 cut(s)	215
MboII	GAAGA	2 cut(s)	31, 617
MfeI	CAATTG	1 cut(s)	525
MluCI	AATT	4 cut(s)	156, 368, 525, 579
MluI	ACGCGT	1 cut(s)	304
MlyI	GAGTC	2 cut(s)	38, 145
MnlI	CCTC	9 cut(s)	39, 124, 127, 141, 292, 523, 588, 594, 597
MseI	TTAA	1 cut(s)	617
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	233, 286, 530
NciI	CCSGG	1 cut(s)	128
NlaIII	CATG	1 cut(s)	566
NlaIV	GGNNCC	2 cut(s)	253, 337
PagI	TCATGA	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 105
PfeI	GAWTC	3 cut(s)	164, 169, 646
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	7 cut(s)	7, 10, 115, 203, 235, 279, 523
PleI	GAGTC	2 cut(s)	37, 145
PpsI	GAGTC	2 cut(s)	37, 145
PspN4I	GGNNCC	2 cut(s)	253, 337
PspPI	GGNCC	1 cut(s)	252
RsaI	GTAC	4 cut(s)	41, 247, 337, 693
RsaNI	GTAC	4 cut(s)	40, 246, 336, 692
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	7 cut(s)	6, 9, 114, 202, 234, 278, 522
Sau96I	GGNCC	1 cut(s)	252
ScaI	AGTACT	3 cut(s)	41, 247, 693
SchI	GAGTC	2 cut(s)	38, 145
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	5 cut(s)	178, 341, 487, 540, 561
SfaNI	GCATC	2 cut(s)	245, 641
SinI	GGWCC	1 cut(s)	252
Sse9I	AATT	4 cut(s)	156, 368, 525, 579
SsiI	CCGC	7 cut(s)	5, 8, 114, 201, 204, 227, 521
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	109
TasI	AATT	4 cut(s)	156, 368, 525, 579
TatI	WGTACW	3 cut(s)	39, 245, 691
TauI	GCSGC	5 cut(s)	8, 11, 116, 204, 524
TfiI	GAWTC	3 cut(s)	164, 169, 646
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	2 cut(s)	67, 661
TseI	GCWGC	2 cut(s)	233, 277
TspDTI	ATGAA	3 cut(s)	375, 531, 551
TspRI	CASTG	2 cut(s)	67, 661
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	1 cut(s)	156
XspI	CTAG	1 cut(s)	215
ZrmI	AGTACT	3 cut(s)	41, 247, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.