Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Reverse (-)

29495645 .. 29503638

Gene Structure 7994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG134700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGAAGCCCACATATGTCAGGTTTCTTGTATCAAATGCTGCAGCTGGTTCTGTTATTGGAAAGGGTGGTGCAACAATCACTGACTTTCAGTCGCAATCTGGAGCACGAATTCAGCTATCACGCAATCATGAATTTTTCCCAGGAACAACTGATAGGATTATTATGATTTCTGGAACAATAAATGAAATTCTCAAGGCTGTGGAACTTGTTCTTACTAAGTTGCTCAATGAGCTATATTCTGAGGAAAGTGACGACGTTGAACCGAGAACAAAGCTGAGACTAATTGTTCCAAATAGTTCTTGTGGTGGGATAATTGGGAAGCAAGGATCTACAATAAAGTCATTTATTGAAGACTCACAGGCTGGGATTAAAATATCACCTCAGGACAATAATTATTTTGGGGTAAATGACCGGCTAGTTACACTAACAGGAACTTTGGAGGAACAGATGCGGGCAGCTGATTTAATTCTTTCTAAGCTATCTGAGGACTCTCACTACACTCAGTCAATGAATGCCCCATTTTCATATCCAGCAGCCTACAATACAGTGAGCTACGCACCACCGAATGGACCATCGAATGGAGCTGCAGGAAAGTTTCAGAATAACAAGGAGGATCGGAGCAACAACTCGGTCACTATAGGTGTTGCAGATAGTCATATTGGTCTGGTTGTTGGTCGTGGTGGAAGGACTATAATGGAGATTAGTCAGGGTAGTGGGGCCAGGATAAAGATATCTGATAGGGGTGATTTCATGTCTGGAACTACTGATAGGAAAGTGACAATTACAGGGTCACAGAGAGCAATCCAAGCGGCCGAGACAATGATAATGCAGAAAGTAAACTATGCTTCTGAGAGGGCGTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

289

Amino Acids

31.17

Weight (kDa)

6.35

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	7 - 72	1e-15	KH domain
KH_1	PF00013	93 - 158	1.1e-14	KH domain
KH_1	PF00013	212 - 278	1.3e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	569, 581
AciI	CCGC	2 cut(s)	454, 812
AclWI	GGATC	2 cut(s)	337, 624
AcoI	YGGCCR	1 cut(s)	813
AcsI	RAATTY	3 cut(s)	111, 134, 189
AfiI	CCNNNNNNNGG	2 cut(s)	569, 581
AgsI	TTSAA	2 cut(s)	263, 353
AhdI	GACNNNNNGTC	1 cut(s)	91
AjnI	CCWGG	2 cut(s)	142, 722
AluBI	AGCT	8 cut(s)	47, 118, 235, 277, 461, 481, 555, 587
AluI	AGCT	8 cut(s)	47, 118, 235, 277, 461, 481, 555, 587
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	274, 812
AlwI	GGATC	2 cut(s)	337, 624
AoxI	GGCC	2 cut(s)	720, 813
ApeKI	GCWGC	5 cut(s)	41, 44, 458, 536, 587
ApoI	RAATTY	3 cut(s)	111, 134, 189
Asp700I	GAANNNNTTC	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	572, 720
AsuHPI	GGTGA	2 cut(s)	372, 758
AvaII	GGWCC	1 cut(s)	572
AxyI	CCTNAGG	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	5 cut(s)	28, 56, 470, 548, 574
BccI	CCATC	1 cut(s)	583
BciT130I	CCWGG	2 cut(s)	144, 724
BcoDI	GTCTC	2 cut(s)	274, 812
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	3 cut(s)	42, 588, 639
BisI	GCNGC	6 cut(s)	42, 45, 459, 537, 588, 813
BlsI	GCNGC	6 cut(s)	43, 46, 460, 538, 589, 814
Bme1390I	CCNGG	2 cut(s)	144, 724
Bme18I	GGWCC	1 cut(s)	572
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	572, 720
BmiI	GGNNCC	1 cut(s)	721
BmrFI	CCNGG	2 cut(s)	144, 724
BmsI	GCATC	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 581
Bse118I	RCCGGY	1 cut(s)	414
Bse21I	CCTNAGG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	144, 724
BseDI	CCNNGG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	569, 581
BseMII	CTCAG	6 cut(s)	234, 269, 398, 477, 518, 843
BseX3I	CGGCCG	1 cut(s)	813
BseXI	GCAGC	5 cut(s)	28, 56, 470, 548, 574
BseYI	CCCAGC	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	816
BshFI	GGCC	2 cut(s)	722, 815
BsiEI	CGRYCG	1 cut(s)	816
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	569, 581
BsmAI	GTCTC	2 cut(s)	274, 812
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	722, 815
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	329, 616
BspACI	CCGC	2 cut(s)	454, 812
BspANI	GGCC	2 cut(s)	722, 815
BspCNI	CTCAG	6 cut(s)	235, 270, 397, 478, 517, 844
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	721
BspMAI	CTGCAG	2 cut(s)	46, 592
BspPI	GGATC	2 cut(s)	337, 624
BsrFI	RCCGGY	1 cut(s)	414
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	329, 616
Bst2UI	CCWGG	2 cut(s)	144, 724
Bst4CI	ACNGT	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	8 cut(s)	219, 243, 278, 384, 477, 486, 504, 852
BstKTI	GATC	2 cut(s)	332, 619
BstMAI	GTCTC	2 cut(s)	274, 812
BstMBI	GATC	2 cut(s)	329, 616
BstMCI	CGRYCG	1 cut(s)	816
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 809
BstNI	CCWGG	2 cut(s)	144, 724
BstSCI	CCNGG	2 cut(s)	142, 722
BstSFI	CTRYAG	3 cut(s)	42, 588, 639
BstV1I	GCAGC	5 cut(s)	28, 56, 470, 548, 574
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BstZI	CGGCCG	1 cut(s)	813
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	722, 815
BtsIMutI	CAGTG	2 cut(s)	81, 555
Cac8I	GCNNGC	1 cut(s)	456
CciI	TCATGA	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	572, 720
CviAII	CATG	2 cut(s)	131, 754
DdeI	CTNAG	8 cut(s)	219, 243, 278, 384, 477, 486, 504, 852
DpnI	GATC	2 cut(s)	331, 618
DpnII	GATC	2 cut(s)	329, 616
DriI	GACNNNNNGTC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	813
EagI	CGGCCG	1 cut(s)	813
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EclXI	CGGCCG	1 cut(s)	813
Eco32I	GATATC	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	572
Eco52I	CGGCCG	1 cut(s)	813
Eco81I	CCTNAGG	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	142, 722
EcoRV	GATATC	1 cut(s)	735
FaeI	CATG	2 cut(s)	134, 757
FatI	CATG	2 cut(s)	130, 753
FauI	CCCGC	1 cut(s)	447
FauNDI	CATATG	1 cut(s)	16
Fnu4HI	GCNGC	6 cut(s)	42, 45, 459, 537, 588, 813
Fsp4HI	GCNGC	6 cut(s)	42, 45, 459, 537, 588, 813
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	6 cut(s)	42, 45, 459, 537, 588, 813
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	722, 815
HapII	CCGG	1 cut(s)	415
Hin1II	CATG	2 cut(s)	134, 757
HinfI	GANTC	2 cut(s)	356, 491
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	2 cut(s)	372, 758
Hpy166II	GTNNAC	1 cut(s)	841
Hpy188I	TCNGA	6 cut(s)	244, 487, 603, 621, 739, 853
Hpy188III	TCNNGA	5 cut(s)	102, 131, 174, 386, 759
Hpy8I	GTNNAC	1 cut(s)	841
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	681
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	44, 74, 590, 650, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 809
HpyF3I	CTNAG	8 cut(s)	219, 243, 278, 384, 477, 486, 504, 852
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	134, 757
Kzo9I	GATC	2 cut(s)	329, 616
LmnI	GCTCC	3 cut(s)	104, 584, 621
Lsp1109I	GCAGC	5 cut(s)	28, 56, 470, 548, 574
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	5 cut(s)	251, 421, 634, 778, 792
MalI	GATC	2 cut(s)	331, 618
MboI	GATC	2 cut(s)	329, 616
MboII	GAAGA	1 cut(s)	365
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	8 cut(s)	111, 134, 189, 285, 315, 394, 468, 783
MlyI	GAGTC	2 cut(s)	350, 485
MmeI	TCCRAC	1 cut(s)	843
MnlI	CCTC	6 cut(s)	238, 393, 436, 481, 607, 849
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	2 cut(s)	372, 467
MspA1I	CMGCKG	2 cut(s)	47, 461
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	2 cut(s)	144, 724
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	2 cut(s)	144, 724
MwoI	GCNNNNNNNGC	2 cut(s)	232, 809
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	2 cut(s)	329, 616
NlaIII	CATG	2 cut(s)	134, 757
NlaIV	GGNNCC	1 cut(s)	721
NmeAIII	GCCGAG	1 cut(s)	841
NmuCI	GTSAC	4 cut(s)	251, 634, 778, 792
PagI	TCATGA	1 cut(s)	130
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	210
PflMI	CCANNNNNTGG	2 cut(s)	569, 581
PkrI	GCNGC	6 cut(s)	43, 46, 460, 538, 589, 814
PleI	GAGTC	2 cut(s)	350, 485
PpsI	GAGTC	2 cut(s)	350, 485
Psp6I	CCWGG	2 cut(s)	142, 722
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	142, 722
PspN4I	GGNNCC	1 cut(s)	721
PspPI	GGNCC	2 cut(s)	572, 720
PstI	CTGCAG	2 cut(s)	46, 592
PsuI	RGATCY	1 cut(s)	329
PvuII	CAGCTG	2 cut(s)	47, 461
SaqAI	TTAA	2 cut(s)	372, 467
SatI	GCNGC	6 cut(s)	42, 45, 459, 537, 588, 813
Sau3AI	GATC	2 cut(s)	329, 616
Sau96I	GGNCC	2 cut(s)	572, 720
SchI	GAGTC	2 cut(s)	350, 485
ScrFI	CCNGG	2 cut(s)	144, 724
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	441
SfcI	CTRYAG	3 cut(s)	42, 588, 639
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	8 cut(s)	111, 134, 189, 285, 315, 394, 468, 783
SsiI	CCGC	2 cut(s)	454, 812
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	2 cut(s)	142, 722
TaaI	ACNGT	1 cut(s)	550
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	578
TaqII	GACCGA	1 cut(s)	622
TasI	AATT	8 cut(s)	111, 134, 189, 285, 315, 394, 468, 783
TauI	GCSGC	1 cut(s)	815
Tru1I	TTAA	2 cut(s)	372, 467
Tru9I	TTAA	2 cut(s)	372, 467
TscAI	CASTG	2 cut(s)	88, 555
TseFI	GTSAC	4 cut(s)	251, 634, 778, 792
TseI	GCWGC	5 cut(s)	41, 44, 458, 536, 587
Tsp45I	GTSAC	4 cut(s)	251, 634, 778, 792
TspDTI	ATGAA	5 cut(s)	147, 201, 516, 527, 742
TspRI	CASTG	2 cut(s)	88, 555
Van91I	CCANNNNNTGG	2 cut(s)	569, 581
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	3 cut(s)	111, 134, 189
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.