Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Reverse (-)

6591937 .. 6599345

Gene Structure 7409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAGTCTACCGAGTCCTCATACGTTTCGTCACCGGAAGCACCGCGGAGGCGCTCTTCGCCGCCGCCGCCGAAATCACCGGCTTCAGACACTACGGAGAAGCCCACATATGTTAGGTTTCTTGTATCAAATGCTGCAGCTGGTTCTGTCATTGGAAAGGGTGGTGCAACCATCACTGATTTTCAATCGCAATCTGGAGCACGAATTCAGCTGTCACGCAATCATGAATTTTTTCCAGGAACAACTGATAGAATTATCATGATTTCTGGAACAATAAATGAAATTCTCAAAGCTGTGGAACTTGTTCTCGCTAAGTTGCTCAATGAGCTATATTCTGAAGAAAGTGAAGATGTTGAACCGAGAACAAAGCTGAGACTTATTGTTCCAAATAGTTCTTGTGGTGGGATAATTGGGAAGCAAGGATCTACAATAAAGTCATTTATTGAAGAGTCACAGGCTGGGATTAAAATATCCCCTCAGGACAATAATTATTTTGGGGTGAATGACCGCCTAGTTACACTAACAGGAACTTTGGATGAACAGATGCGGGCAGCTGATTTAATTCTATCTAAGCTATCTGAGGACTCTCACTACACTCAATCGATGAATGCCCCATTTTCATATCCAGGTGTTTTCTTCTCGGGTTTTCATGGTATTCCATATACATATGTGCTTCCTTCTGTGTCAACAGCAGCCTACAATGCAGTCAGCTATGGACCACCTCCACCAAATGGACCACCGAATGGGGCTGCGGGAAAGTTTCAGAATAACAAGGAGGATCGAAACAACAACAACTCGGTCACAATAGGTGTGGCAGATAGTCATATTGGTCTGGTTGTTGGTCGTGGTGGAAGGACTATAATGGAAATTAGTCAGGGTAGTGGGGCCAGGATAAAGATATCTGATAGGGGTGATTTCATGTCTGGAACTACTGATAGGAAAGTGACAATTACAGGGTCACAGAGGTCGATCCAAGTGGCCGAGACGATGATAATGCAGAAAGTAAATTATGCTTCTGAGAGGGCGTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

345

Amino Acids

37.02

Weight (kDa)

6.47

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	38 - 103	1.1e-15	KH domain
KH_1	PF00013	124 - 189	8.5e-15	KH domain
KH_1	PF00013	267 - 333	1.1e-14	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	731, 743
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	46
AciI	CCGC	8 cut(s)	44, 46, 62, 65, 68, 508, 547, 752
AclWI	GGATC	3 cut(s)	430, 786, 964
AcoI	YGGCCR	1 cut(s)	978
AcsI	RAATTY	3 cut(s)	204, 227, 282
AcuI	CTGAAG	2 cut(s)	69, 357
AfiI	CCNNNNNNNGG	2 cut(s)	731, 743
AgsI	TTSAA	3 cut(s)	185, 356, 446
AjnI	CCWGG	3 cut(s)	235, 625, 887
AluBI	AGCT	8 cut(s)	140, 211, 293, 328, 370, 554, 574, 711
AluI	AGCT	8 cut(s)	140, 211, 293, 328, 370, 554, 574, 711
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	367, 977
AlwI	GGATC	3 cut(s)	430, 786, 964
Ama87I	CYCGRG	1 cut(s)	640
AoxI	GGCC	2 cut(s)	885, 978
ApeKI	GCWGC	5 cut(s)	134, 137, 551, 692, 749
ApoI	RAATTY	3 cut(s)	204, 227, 282
Asp700I	GAANNNNTTC	2 cut(s)	231, 303
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	716, 734, 885
AsuHPI	GGTGA	4 cut(s)	24, 69, 511, 923
AvaI	CYCGRG	1 cut(s)	640
AvaII	GGWCC	2 cut(s)	716, 734
AxyI	CCTNAGG	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	5 cut(s)	121, 149, 563, 704, 736
BccI	CCATC	1 cut(s)	179
BcgI	CGANNNNNNTGC	2 cut(s)	976, 1010
BciT130I	CCWGG	3 cut(s)	237, 627, 889
BcoDI	GTCTC	2 cut(s)	367, 977
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	8 cut(s)	62, 65, 68, 135, 138, 552, 693, 750
BlsI	GCNGC	8 cut(s)	63, 66, 69, 136, 139, 553, 694, 751
Bme1390I	CCNGG	3 cut(s)	237, 627, 889
Bme18I	GGWCC	2 cut(s)	716, 734
BmeT110I	CYCGRG	1 cut(s)	640
BmgT120I	GGNCC	3 cut(s)	716, 734, 885
BmiI	GGNNCC	1 cut(s)	886
BmrFI	CCNGG	3 cut(s)	237, 627, 889
BmsI	GCATC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	731, 743
Bse118I	RCCGGY	1 cut(s)	79
Bse21I	CCTNAGG	1 cut(s)	477
BseBI	CCWGG	3 cut(s)	237, 627, 889
BseCI	ATCGAT	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	2 cut(s)	731, 743
BseMII	CTCAG	4 cut(s)	362, 491, 570, 1008
BseXI	GCAGC	5 cut(s)	121, 149, 563, 704, 736
BseYI	CCCAGC	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	887, 980
BshVI	ATCGAT	1 cut(s)	602
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	640
BsiSI	CCGG	2 cut(s)	35, 80
BslI	CCNNNNNNNGG	2 cut(s)	731, 743
BsmAI	GTCTC	2 cut(s)	367, 977
BsmBI	CGTCTC	1 cut(s)	977
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	887, 980
BsoBI	CYCGRG	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	422, 778, 969
BspACI	CCGC	8 cut(s)	44, 46, 62, 65, 68, 508, 547, 752
BspANI	GGCC	2 cut(s)	887, 980
BspCNI	CTCAG	4 cut(s)	363, 490, 571, 1009
BspDI	ATCGAT	1 cut(s)	602
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	2 cut(s)	223, 258
BspLI	GGNNCC	1 cut(s)	886
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	3 cut(s)	430, 786, 964
BspQI	GCTCTTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	422, 778, 969
Bst2UI	CCWGG	3 cut(s)	237, 627, 889
Bst6I	CTCTTC	2 cut(s)	61, 441
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	6 cut(s)	312, 371, 477, 570, 579, 1017
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	425, 781, 972
BstMAI	GTCTC	2 cut(s)	367, 977
BstMBI	GATC	3 cut(s)	422, 778, 969
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 67, 325, 701
BstNI	CCWGG	3 cut(s)	237, 627, 889
BstSCI	CCNGG	3 cut(s)	235, 625, 887
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	5 cut(s)	121, 149, 563, 704, 736
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	602
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	887, 980
BsuTUI	ATCGAT	1 cut(s)	602
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	549
CciI	TCATGA	2 cut(s)	223, 258
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	716, 734, 885
Cfr42I	CCGCGG	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	602
CspCI	CAANNNNNGTGG	2 cut(s)	792, 827
CviAII	CATG	4 cut(s)	224, 259, 650, 919
DdeI	CTNAG	6 cut(s)	312, 371, 477, 570, 579, 1017
DpnI	GATC	3 cut(s)	424, 780, 971
DpnII	GATC	3 cut(s)	422, 778, 969
EaeI	YGGCCR	1 cut(s)	978
Eam1104I	CTCTTC	2 cut(s)	61, 441
EarI	CTCTTC	2 cut(s)	61, 441
Eco32I	GATATC	1 cut(s)	900
Eco47I	GGWCC	2 cut(s)	716, 734
Eco57I	CTGAAG	2 cut(s)	69, 357
Eco81I	CCTNAGG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	640
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	3 cut(s)	235, 625, 887
EcoRV	GATATC	1 cut(s)	900
Esp3I	CGTCTC	1 cut(s)	977
FaeI	CATG	4 cut(s)	227, 262, 653, 922
FatI	CATG	4 cut(s)	223, 258, 649, 918
FauI	CCCGC	2 cut(s)	540, 745
FauNDI	CATATG	2 cut(s)	109, 667
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	8 cut(s)	62, 65, 68, 135, 138, 552, 693, 750
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	8 cut(s)	62, 65, 68, 135, 138, 552, 693, 750
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	8 cut(s)	62, 65, 68, 135, 138, 552, 693, 750
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	887, 980
HapII	CCGG	2 cut(s)	35, 80
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	4 cut(s)	227, 262, 653, 922
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	687
HindII	GTYRAC	1 cut(s)	687
HinfI	GANTC	4 cut(s)	5, 14, 449, 584
HpaII	CCGG	2 cut(s)	35, 80
HphI	GGTGA	4 cut(s)	24, 69, 511, 923
Hpy166II	GTNNAC	2 cut(s)	9, 687
Hpy188I	TCNGA	6 cut(s)	88, 337, 580, 765, 904, 1018
Hpy188III	TCNNGA	6 cut(s)	195, 224, 259, 267, 479, 924
Hpy8I	GTNNAC	2 cut(s)	9, 687
HpyAV	CCTTC	2 cut(s)	687, 846
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	4 cut(s)	137, 167, 704, 997
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 67, 325, 701
HpyF3I	CTNAG	6 cut(s)	312, 371, 477, 570, 579, 1017
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	227, 262, 653, 922
HspAI	GCGC	1 cut(s)	52
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	3 cut(s)	422, 778, 969
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	5 cut(s)	121, 149, 563, 704, 736
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	7 cut(s)	30, 213, 450, 514, 799, 943, 957
MalI	GATC	3 cut(s)	424, 780, 971
MboI	GATC	3 cut(s)	422, 778, 969
MboII	GAAGA	5 cut(s)	48, 350, 359, 458, 628
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	202
MlyI	GAGTC	4 cut(s)	14, 23, 458, 578
MmeI	TCCRAC	1 cut(s)	1008
MnlI	CCTC	8 cut(s)	28, 42, 486, 574, 732, 769, 957, 1014
MroXI	GAANNNNTTC	2 cut(s)	231, 303
MseI	TTAA	2 cut(s)	465, 560
MspA1I	CMGCKG	4 cut(s)	46, 140, 211, 554
MspI	CCGG	2 cut(s)	35, 80
MspR9I	CCNGG	3 cut(s)	237, 627, 889
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	3 cut(s)	237, 627, 889
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	58, 67, 325, 701
NdeI	CATATG	2 cut(s)	109, 667
NdeII	GATC	3 cut(s)	422, 778, 969
NlaIII	CATG	4 cut(s)	227, 262, 653, 922
NlaIV	GGNNCC	1 cut(s)	886
NmeAIII	GCCGAG	1 cut(s)	1006
NmuCI	GTSAC	6 cut(s)	30, 213, 450, 799, 943, 957
PagI	TCATGA	2 cut(s)	223, 258
PciSI	GCTCTTC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	613
PdmI	GAANNNNTTC	2 cut(s)	231, 303
PflMI	CCANNNNNTGG	2 cut(s)	731, 743
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	8 cut(s)	63, 66, 69, 136, 139, 553, 694, 751
PleI	GAGTC	4 cut(s)	13, 22, 457, 578
PpsI	GAGTC	4 cut(s)	13, 22, 457, 578
Psp6I	CCWGG	3 cut(s)	235, 625, 887
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	3 cut(s)	235, 625, 887
PspN4I	GGNNCC	1 cut(s)	886
PspPI	GGNCC	3 cut(s)	716, 734, 885
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	422
PvuII	CAGCTG	3 cut(s)	140, 211, 554
SacII	CCGCGG	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	465, 560
SatI	GCNGC	8 cut(s)	62, 65, 68, 135, 138, 552, 693, 750
Sau3AI	GATC	3 cut(s)	422, 778, 969
Sau96I	GGNCC	3 cut(s)	716, 734, 885
SchI	GAGTC	4 cut(s)	14, 23, 458, 578
ScrFI	CCNGG	3 cut(s)	237, 627, 889
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	135
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	716, 734
SsiI	CCGC	8 cut(s)	44, 46, 62, 65, 68, 508, 547, 752
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	3 cut(s)	235, 625, 887
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	3 cut(s)	602, 781, 968
TaqII	GACCGA	1 cut(s)	787
TauI	GCSGC	3 cut(s)	64, 67, 70
Tru1I	TTAA	2 cut(s)	465, 560
Tru9I	TTAA	2 cut(s)	465, 560
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	6 cut(s)	30, 213, 450, 799, 943, 957
TseI	GCWGC	5 cut(s)	134, 137, 551, 692, 749
Tsp45I	GTSAC	6 cut(s)	30, 213, 450, 799, 943, 957
TspDTI	ATGAA	7 cut(s)	240, 294, 552, 609, 620, 638, 907
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	2 cut(s)	731, 743
VpaK11BI	GGWCC	2 cut(s)	716, 734
XapI	RAATTY	3 cut(s)	204, 227, 282
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	2 cut(s)	231, 303
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.