Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008038

Physical Location & Seq

Genomic Coordinates Reverse (-)

5098870 .. 5104550

Gene Structure 5681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05820.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGTCCACTGAGTCCTCCTACATGTCGTCACCGGAGGCCCCACGGAGGCGCTCATCGCCGCCGCCGCCCAAATCACCGGGTTCGGATTCTGCGGAGAAGTCTACATATGTTAGGTTTCTGGTGTCAAATGCTGCAGCTGGTTCTGTTATTGGAAAGGGTGGTGCAACAATCACTGATTTTCAATCGCAATCTGGAGCAAGAATTCAGTTGTCGCGCAATCATGAGTTTTTCCCTGGAACAACTGATAGGATTATTATGATTTCTGGAACAATTAATGAAATAGTCAAGGCTGTAGACCTTGTTCTTGCTAAGTTACTGAGTGAGCTTCATTCTGAAGAAACTGAAGAAGTGGAACCAAGAACAAAGCTGAGATTAGTTGTTCCAAATAGTTCTTGTGGTGGCATAATTGGGAAAGGAGGATCTACCATAAAGTCATTTATTGAAGAATCACAAGCTGGAATTAAAATATCACCACAAGACAATAATTATTTTGGTTTGAATGATCGGCTGGTGACAGTAACAGGAAGTCTGGATGAACAGATGCGAGCAGTTGATTTAATTGTTTCTAAGTTATCTGAAGACTCGCATTATGCTCAGTCTATGAATGCCCCATTTTCATATCCAGGTGTTTTCTTCTTGGGTTTTCATGGTATCCAATATACATTTGTGCTTCCTTCTGTTGCAACAGCGGCGTACAATGCAATGAGTTATGGACCACCAAATGGGACTGGAGGAAAATTTCAGAATGCTAAGGAGGATCGGAGTAACTCGGTCACGATTGGCGTAGCAGACGAGCATATTGGGTTGGTTCTTGGTCGTGGTGGAAGGACCATAACGGAGATTAGTCAGGGTAGTGGAGCCAAGATAAAGATATCTGATAGGGGTGACTTCATGTCTGGAACTACTGACAGGAAGGTGACAATCACGGGGTCACAGAGGGCAATCCATGCTGCTGAGTCCATGATAATGCAGAAAGTATCCTATGCATCCGAGAGGGCAATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0034641 GO:0042221 GO:0042592 GO:0043170 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0046483 GO:0046719 GO:0048878 GO:0050789 GO:0050792 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

337

Amino Acids

35.97

Weight (kDa)

6.34

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04430 AT5G04430
fragaria_vesca	FvH4_7g06600 FvH4_7g06600 FvH4_7g06600
malus_domestica	MD02G1237900.v1.1 MD02G1241800.v1.1 MD07G1074100.v1.1
prunus_persica	Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1 Prupe.2G093900_v2.0.a1
pyrus_communis	pycom07g05820
rosa_chinensis	RchiOBHm_Chr1g0335271
rosa_laevigata	RLG00000029390
rosa_multiflora	Rmu_sc0001790.1_g000005
rosa_roxburghii	Rroxscaffold_4G00316100
rosa_rugosa	Rorug01G0121600 Rorug01G0121700 Rorug01G0121800
rosa_samantha	Rh1AG143000 Rh1BG112000 Rh1CG134700 Rh1DG148600
rosa_wichuraiana	Rw1G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	725
AccI	GTMKAC	2 cut(s)	104, 297
AccII	CGCG	1 cut(s)	217
AciI	CCGC	5 cut(s)	62, 65, 68, 95, 692
AclWI	GGATC	2 cut(s)	430, 768
AcsI	RAATTY	2 cut(s)	204, 740
AcuI	CTGAAG	3 cut(s)	357, 366, 600
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	2 cut(s)	48, 725
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	185, 446, 502
AhdI	GACNNNNNGTC	1 cut(s)	895
AjnI	CCWGG	2 cut(s)	235, 625
AluBI	AGCT	4 cut(s)	140, 328, 370, 458
AluI	AGCT	4 cut(s)	140, 328, 370, 458
AlwI	GGATC	2 cut(s)	430, 768
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	3 cut(s)	134, 137, 953
ApoI	RAATTY	2 cut(s)	204, 740
AseI	ATTAAT	1 cut(s)	276
AspLEI	GCGC	2 cut(s)	54, 219
AspS9I	GGNCC	3 cut(s)	40, 716, 831
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	6 cut(s)	24, 69, 465, 526, 899, 931
AvaII	GGWCC	2 cut(s)	716, 831
BbsI	GAAGAC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	121, 149, 940
BciT130I	CCWGG	2 cut(s)	237, 627
BciVI	GTATCC	2 cut(s)	665, 991
BcnI	CCSGG	1 cut(s)	81
BfmI	CTRYAG	2 cut(s)	135, 294
BfoI	RGCGCY	1 cut(s)	55
BfuI	GTATCC	2 cut(s)	665, 991
BisI	GCNGC	7 cut(s)	62, 65, 68, 135, 138, 693, 954
BlsI	GCNGC	7 cut(s)	63, 66, 69, 136, 139, 694, 955
Bme1390I	CCNGG	3 cut(s)	81, 237, 627
Bme18I	GGWCC	2 cut(s)	716, 831
BmeRI	GACNNNNNGTC	1 cut(s)	895
BmgT120I	GGNCC	3 cut(s)	40, 716, 831
BmiI	GGNNCC	3 cut(s)	42, 357, 862
BmrFI	CCNGG	3 cut(s)	81, 237, 627
BmsI	GCATC	2 cut(s)	534, 998
BpiI	GAAGAC	1 cut(s)	588
BpmI	CTGGAG	2 cut(s)	216, 753
Bpu10I	CCTNAGC	1 cut(s)	753
BpuMI	CCSGG	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	44, 235
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 725
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	2 cut(s)	711, 1008
BseBI	CCWGG	2 cut(s)	237, 627
BseDI	CCNNGG	2 cut(s)	44, 235
BseGI	GGATG	2 cut(s)	541, 989
BseLI	CCNNNNNNNGG	2 cut(s)	48, 725
BseMI	GCAATG	2 cut(s)	711, 1008
BseMII	CTCAG	4 cut(s)	311, 362, 611, 948
BseNI	ACTGG	1 cut(s)	736
BseXI	GCAGC	3 cut(s)	121, 149, 940
Bsh1236I	CGCG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	35, 80
BslFI	GGGAC	1 cut(s)	742
BslI	CCNNNNNNNGG	2 cut(s)	48, 725
BsmFI	GGGAC	1 cut(s)	742
BsmI	GAATGC	2 cut(s)	613, 754
BsnI	GGCC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	422, 505, 760
BspACI	CCGC	5 cut(s)	62, 65, 68, 95, 692
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	5 cut(s)	4, 312, 363, 610, 949
BspFNI	CGCG	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	42, 357, 862
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	2 cut(s)	430, 768
BsrDI	GCAATG	2 cut(s)	711, 1008
BsrI	ACTGG	1 cut(s)	736
BssECI	CCNNGG	2 cut(s)	44, 235
BssMI	GATC	3 cut(s)	422, 505, 760
Bst2UI	CCWGG	2 cut(s)	237, 627
Bst4CI	ACNGT	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	8 cut(s)	12, 312, 320, 371, 570, 597, 753, 957
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	541, 989
BstFNI	CGCG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 219
BstKTI	GATC	3 cut(s)	425, 508, 763
BstMBI	GATC	3 cut(s)	422, 505, 760
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 67, 692, 701, 950
BstNI	CCWGG	2 cut(s)	237, 627
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	3 cut(s)	79, 235, 625
BstSFI	CTRYAG	2 cut(s)	135, 294
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	121, 149, 940
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuI	GTATCC	2 cut(s)	665, 991
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	541, 989
BtsIMutI	CAGTG	2 cut(s)	9, 174
Cac8I	GCNNGC	1 cut(s)	549
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	2 cut(s)	54, 219
Cfr13I	GGNCC	3 cut(s)	40, 716, 831
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	6 cut(s)	25, 224, 650, 895, 950, 964
CviJI	RGCY	8 cut(s)	41, 140, 293, 328, 370, 458, 511, 863
CviKI_1	RGCY	8 cut(s)	41, 140, 293, 328, 370, 458, 511, 863
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	8 cut(s)	12, 312, 320, 371, 570, 597, 753, 957
DpnI	GATC	3 cut(s)	424, 507, 762
DpnII	GATC	3 cut(s)	422, 505, 760
DriI	GACNNNNNGTC	1 cut(s)	895
Eam1105I	GACNNNNNGTC	1 cut(s)	895
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	2 cut(s)	716, 831
Eco57I	CTGAAG	3 cut(s)	357, 366, 600
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	235, 625
EcoRV	GATATC	1 cut(s)	876
EcoT22I	ATGCAT	1 cut(s)	991
FaeI	CATG	6 cut(s)	28, 227, 653, 898, 953, 967
FaqI	GGGAC	1 cut(s)	742
FatI	CATG	6 cut(s)	24, 223, 649, 894, 949, 963
FauNDI	CATATG	1 cut(s)	109
FblI	GTMKAC	2 cut(s)	104, 297
Fnu4HI	GCNGC	7 cut(s)	62, 65, 68, 135, 138, 693, 954
FokI	GGATG	2 cut(s)	548, 976
Fsp4HI	GCNGC	7 cut(s)	62, 65, 68, 135, 138, 693, 954
GlaI	GCGC	2 cut(s)	53, 218
GluI	GCNGC	7 cut(s)	62, 65, 68, 135, 138, 693, 954
GsuI	CTGGAG	2 cut(s)	216, 753
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	2 cut(s)	35, 80
HhaI	GCGC	2 cut(s)	54, 219
Hin1II	CATG	6 cut(s)	28, 227, 653, 898, 953, 967
Hin6I	GCGC	2 cut(s)	52, 217
HinP1I	GCGC	2 cut(s)	52, 217
HinfI	GANTC	6 cut(s)	5, 14, 89, 449, 584, 959
HpaII	CCGG	2 cut(s)	35, 80
HphI	GGTGA	6 cut(s)	24, 69, 465, 526, 899, 931
Hpy166II	GTNNAC	3 cut(s)	9, 105, 298
Hpy188I	TCNGA	7 cut(s)	88, 337, 580, 747, 765, 880, 994
Hpy188III	TCNNGA	6 cut(s)	195, 224, 267, 533, 778, 900
Hpy8I	GTNNAC	3 cut(s)	9, 105, 298
HpyAV	CCTTC	3 cut(s)	687, 822, 910
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	6 cut(s)	137, 167, 686, 704, 973, 989
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 67, 692, 701, 950
HpyF3I	CTNAG	8 cut(s)	12, 312, 320, 371, 570, 597, 753, 957
Hsp92II	CATG	6 cut(s)	28, 227, 653, 898, 953, 967
HspAI	GCGC	2 cut(s)	52, 217
Kzo9I	GATC	3 cut(s)	422, 505, 760
LmnI	GCTCC	2 cut(s)	197, 860
Lsp1109I	GCAGC	3 cut(s)	121, 149, 940
LweI	GCATC	2 cut(s)	534, 998
MaeIII	GTNAC	9 cut(s)	30, 315, 514, 520, 767, 775, 887, 919, 933
MalI	GATC	3 cut(s)	424, 507, 762
MboI	GATC	3 cut(s)	422, 505, 760
MboII	GAAGA	5 cut(s)	350, 359, 458, 593, 628
MflI	RGATCY	1 cut(s)	422
MluCI	AATT	7 cut(s)	204, 273, 408, 462, 487, 561, 740
MlyI	GAGTC	4 cut(s)	14, 23, 578, 968
MnlI	CCTC	8 cut(s)	28, 31, 42, 413, 728, 751, 933, 990
Mph1103I	ATGCAT	1 cut(s)	991
MseI	TTAA	4 cut(s)	276, 465, 560, 1009
MslI	CAYNNNNRTG	1 cut(s)	968
MspA1I	CMGCKG	2 cut(s)	140, 692
MspI	CCGG	2 cut(s)	35, 80
MspR9I	CCNGG	3 cut(s)	81, 237, 627
Mva1269I	GAATGC	2 cut(s)	613, 754
MvaI	CCWGG	2 cut(s)	237, 627
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	5 cut(s)	58, 67, 692, 701, 950
NciI	CCSGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	3 cut(s)	422, 505, 760
NlaIII	CATG	6 cut(s)	28, 227, 653, 898, 953, 967
NlaIV	GGNNCC	3 cut(s)	42, 357, 862
NmuCI	GTSAC	6 cut(s)	30, 514, 775, 887, 919, 933
NsiI	ATGCAT	1 cut(s)	991
NspI	RCATGY	1 cut(s)	28
PagI	TCATGA	1 cut(s)	223
PciI	ACATGT	1 cut(s)	24
PctI	GAATGC	2 cut(s)	613, 754
PfeI	GAWTC	2 cut(s)	89, 449
PflMI	CCANNNNNTGG	1 cut(s)	725
PkrI	GCNGC	7 cut(s)	63, 66, 69, 136, 139, 694, 955
PleI	GAGTC	4 cut(s)	13, 22, 578, 967
PpsI	GAGTC	4 cut(s)	13, 22, 578, 967
PscI	ACATGT	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	235, 625
PspGI	CCWGG	2 cut(s)	235, 625
PspN4I	GGNNCC	3 cut(s)	42, 357, 862
PspPI	GGNCC	3 cut(s)	40, 716, 831
PsrI	GAACNNNNNNTAC	2 cut(s)	288, 320
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	968
SaqAI	TTAA	4 cut(s)	276, 465, 560, 1009
SatI	GCNGC	7 cut(s)	62, 65, 68, 135, 138, 693, 954
Sau3AI	GATC	3 cut(s)	422, 505, 760
Sau96I	GGNCC	3 cut(s)	40, 716, 831
SchI	GAGTC	4 cut(s)	14, 23, 578, 968
ScrFI	CCNGG	3 cut(s)	81, 237, 627
SetI	ASST	8 cut(s)	119, 142, 303, 330, 372, 460, 631, 921
SfaNI	GCATC	2 cut(s)	534, 998
SfcI	CTRYAG	2 cut(s)	135, 294
SinI	GGWCC	2 cut(s)	716, 831
SmiMI	CAYNNNNRTG	1 cut(s)	968
Sse9I	AATT	7 cut(s)	204, 273, 408, 462, 487, 561, 740
SsiI	CCGC	5 cut(s)	62, 65, 68, 95, 692
StyD4I	CCNGG	3 cut(s)	79, 235, 625
TaaI	ACNGT	1 cut(s)	520
TaqII	GACCGA	1 cut(s)	763
TasI	AATT	7 cut(s)	204, 273, 408, 462, 487, 561, 740
TauI	GCSGC	4 cut(s)	64, 67, 70, 695
TfiI	GAWTC	2 cut(s)	89, 449
Tru1I	TTAA	4 cut(s)	276, 465, 560, 1009
Tru9I	TTAA	4 cut(s)	276, 465, 560, 1009
TscAI	CASTG	2 cut(s)	16, 181
TseFI	GTSAC	6 cut(s)	30, 514, 775, 887, 919, 933
TseI	GCWGC	3 cut(s)	134, 137, 953
Tsp45I	GTSAC	6 cut(s)	30, 514, 775, 887, 919, 933
TspDTI	ATGAA	7 cut(s)	294, 320, 552, 609, 620, 638, 883
TspGWI	ACGGA	2 cut(s)	61, 854
TspRI	CASTG	2 cut(s)	16, 181
Van91I	CCANNNNNTGG	1 cut(s)	725
VpaK11BI	GGWCC	2 cut(s)	716, 831
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	2 cut(s)	204, 740
XceI	RCATGY	1 cut(s)	28
XmiI	GTMKAC	2 cut(s)	104, 297
Zsp2I	ATGCAT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.