Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

1853432 .. 1855978

Gene Structure 2547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCAGCTTCAGGAAATCCAAGATAACATAAGGAGTAGACGCAATAAGATATTTCTCCTCATGGAGGAAGTGAGGAGGTTACGTGTGCAGCAACGTATCAAGAGTGTTAAAGCCATCAATGAGGACAGTGAGCTCGAGGCTACCGAGATGCCTGAGATCACATCTTCTATTCCTTTCCTCCCTAATGTGACACCAAAGACTTTGAAACAACTCTATTCGACCAGCGTTGCATTGATATCGGGAATTATCTTCTTTGGTGGTCTCATTGCACCTAATCTGGAACTGAAGGTAGGACTTGGAGGAACCTCTTATGAAGATTTTATAAGGAGCTTACATCTACCCTTGCAATTAAGCCAGGTAGATCCAATTGTGGCATCTTTTTCTGGCGGGGCCGTGGGAGTCATTTCAACCTTGATGCTAATCGAAGTTAACAATGTTAAACAACAAGAGAAGAAGAGGTGCAAATACTGCCTTGGGACTGGATACTTGCCATGCGCTCGATGCTCAGCTAGTGGTGTGTGTTTGAGCATTGATCCCATCACAAGACCTAGAGCTACAAACCAGCTTATGCAGGTCGCGACCACAAAAAGATGTCTAAATTGTTCCGGCGCAGGAAAGGTGATGTGTCCGACATGTCTTTGCACCGGGATGGTAACAGCTAGCGAGCATGACCCCCGCTTTGACCCTTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.44

Weight (kDa)

8.69

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	1 cut(s)	578
AciI	CCGC	2 cut(s)	387, 676
AclWI	GGATC	2 cut(s)	356, 527
AcuI	CTGAAG	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	2 cut(s)	82, 632
AgsI	TTSAA	2 cut(s)	205, 408
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	7 cut(s)	7, 133, 330, 509, 554, 565, 659
AluI	AGCT	7 cut(s)	7, 133, 330, 509, 554, 565, 659
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	2 cut(s)	356, 527
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	2 cut(s)	4, 88
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
AspLEI	GCGC	2 cut(s)	497, 611
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	1 cut(s)	646
AsuHPI	GGTGA	1 cut(s)	631
AsuNHI	GCTAGC	1 cut(s)	659
AvaI	CYCGRG	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	16, 100
BccI	CCATC	3 cut(s)	122, 545, 643
BceAI	ACGGC	1 cut(s)	377
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BciT130I	CCWGG	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	476
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	3 cut(s)	510, 549, 660
BfuAI	ACCTGC	1 cut(s)	562
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	2 cut(s)	5, 89
BlpI	GCTNAGC	1 cut(s)	505
BlsI	GCNGC	2 cut(s)	6, 90
Bme1390I	CCNGG	2 cut(s)	356, 646
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	2 cut(s)	304, 391
BmrFI	CCNGG	2 cut(s)	356, 646
BmsI	GCATC	4 cut(s)	138, 383, 405, 491
BmtI	GCTAGC	1 cut(s)	663
Bpu1102I	GCTNAGC	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	646
BsaAI	YACGTR	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	393, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	484
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	393, 472
BseGI	GGATG	1 cut(s)	654
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	144, 519
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	2 cut(s)	47, 88
BseXI	GCAGC	2 cut(s)	16, 100
BsgI	GTGCAG	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	578
BshFI	GGCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	606, 645
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	156, 361, 532
Bsp1720I	GCTNAGC	1 cut(s)	505
Bsp68I	TCGCGA	1 cut(s)	578
BspACI	CCGC	2 cut(s)	387, 676
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	145, 518
BspFNI	CGCG	1 cut(s)	578
BspLI	GGNNCC	2 cut(s)	304, 391
BspMI	ACCTGC	1 cut(s)	562
BspOI	GCTAGC	1 cut(s)	663
BspPI	GGATC	2 cut(s)	356, 527
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	393, 472
BssMI	GATC	3 cut(s)	156, 361, 532
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	661, 665
BstDEI	CTNAG	2 cut(s)	153, 505
BstDSI	CCRYGG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	654
BstFNI	CGCG	1 cut(s)	578
BstHHI	GCGC	2 cut(s)	497, 611
BstKTI	GATC	3 cut(s)	159, 364, 535
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	156, 361, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	468, 501
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	636
BstSCI	CCNGG	2 cut(s)	354, 644
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	2 cut(s)	16, 100
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	133
BtuMI	TCGCGA	1 cut(s)	578
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	2 cut(s)	661, 665
CfoI	GCGC	2 cut(s)	497, 611
Cfr13I	GGNCC	1 cut(s)	390
CseI	GACGC	1 cut(s)	48
CviAII	CATG	4 cut(s)	61, 492, 633, 668
DdeI	CTNAG	2 cut(s)	153, 505
DpnI	GATC	3 cut(s)	158, 363, 534
DpnII	GATC	3 cut(s)	156, 361, 532
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	4 cut(s)	64, 495, 636, 671
FaiI	YATR	8 cut(s)	29, 62, 312, 323, 493, 569, 634, 669
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	4 cut(s)	60, 491, 632, 667
FauI	CCCGC	2 cut(s)	380, 683
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	5, 89
FokI	GGATG	1 cut(s)	661
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	5, 89
FspBI	CTAG	3 cut(s)	510, 549, 660
GlaI	GCGC	2 cut(s)	496, 610
GluI	GCNGC	2 cut(s)	5, 89
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	606, 645
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	2 cut(s)	497, 611
Hin1II	CATG	4 cut(s)	64, 495, 636, 671
Hin6I	GCGC	2 cut(s)	495, 609
HinP1I	GCGC	2 cut(s)	495, 609
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	399
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	606, 645
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	2 cut(s)	38, 430
Hpy188I	TCNGA	1 cut(s)	630
Hpy188III	TCNNGA	5 cut(s)	11, 100, 240, 278, 577
Hpy8I	GTNNAC	2 cut(s)	38, 430
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	2 cut(s)	82, 94
HpyCH4V	TGCA	8 cut(s)	4, 88, 230, 269, 346, 462, 571, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	468, 501
HpyF3I	CTNAG	2 cut(s)	153, 505
HpySE526I	ACGT	2 cut(s)	82, 94
Hsp92II	CATG	4 cut(s)	64, 495, 636, 671
HspAI	GCGC	2 cut(s)	495, 609
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	3 cut(s)	156, 361, 532
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	2 cut(s)	16, 100
LweI	GCATC	4 cut(s)	138, 383, 405, 491
MaeI	CTAG	3 cut(s)	510, 549, 660
MaeII	ACGT	2 cut(s)	82, 94
MaeIII	GTNAC	3 cut(s)	78, 187, 652
MalI	GATC	3 cut(s)	158, 363, 534
MboI	GATC	3 cut(s)	156, 361, 532
MboII	GAAGA	5 cut(s)	156, 241, 326, 463, 466
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	4 cut(s)	243, 347, 366, 598
MlyI	GAGTC	1 cut(s)	408
MmeI	TCCRAC	1 cut(s)	653
MseI	TTAA	4 cut(s)	108, 350, 429, 438
MslI	CAYNNNNRTG	1 cut(s)	647
MspI	CCGG	2 cut(s)	606, 645
MspR9I	CCNGG	2 cut(s)	356, 646
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	578
MwoI	GCNNNNNNNGC	2 cut(s)	468, 501
NciI	CCSGG	1 cut(s)	646
NdeII	GATC	3 cut(s)	156, 361, 532
NheI	GCTAGC	1 cut(s)	659
NlaIII	CATG	4 cut(s)	64, 495, 636, 671
NlaIV	GGNNCC	2 cut(s)	304, 391
NmuCI	GTSAC	1 cut(s)	187
NruI	TCGCGA	1 cut(s)	578
NspI	RCATGY	1 cut(s)	636
PaeR7I	CTCGAG	1 cut(s)	134
PciI	ACATGT	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	6, 90
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
Ppu21I	YACGTR	1 cut(s)	83
PscI	ACATGT	1 cut(s)	632
PsiI	TTATAA	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	304, 391
PspPI	GGNCC	1 cut(s)	390
PspXI	VCTCGAGB	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	361
RruI	TCGCGA	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	647
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	4 cut(s)	108, 350, 429, 438
SatI	GCNGC	2 cut(s)	5, 89
Sau3AI	GATC	3 cut(s)	156, 361, 532
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	1 cut(s)	408
ScrFI	CCNGG	2 cut(s)	356, 646
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	4 cut(s)	138, 383, 405, 491
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	243, 347, 366, 598
SsiI	CCGC	2 cut(s)	387, 676
SspMI	CTAG	3 cut(s)	510, 549, 660
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	354, 644
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	2 cut(s)	85, 97
TaqI	TCGA	5 cut(s)	135, 218, 423, 499, 690
TasI	AATT	4 cut(s)	243, 347, 366, 598
Tru1I	TTAA	4 cut(s)	108, 350, 429, 438
Tru9I	TTAA	4 cut(s)	108, 350, 429, 438
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	4, 88
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	133
XagI	CCTNNNNNAGG	1 cut(s)	62
XceI	RCATGY	1 cut(s)	636
XhoI	CTCGAG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	3 cut(s)	510, 549, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.