Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001353.1

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

124258 .. 126769

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001353.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atggctgctttctctctctcctcctcctcccctcctcctctctccctaattcctcgcacctcctcctcccatggcagcagacgcctctccctctccaaactcccctcctcctcctcctcctcctcctcgcgccccagagtctcctgttcctcttcttctgagaaatcctcccccggcggcgataacgttcccagctctttttgtatcatagagggcccggagacggtgcaggactttgttcagatgcagctgcaggaaattcaggacaacataaggagtaggcggaacaagatttttctgctcatggaagagctgaggagattgcgggtacagcaccggataaagatggcgaaggatttcgatgagagtggtgaggaagagtccaatgagatgcctgacattccatcatccatcccttttctcccttctgtgacaccaaagactttgaagcaactctacctcacaagcgcaacatttatatctgggataattgtatttgggggccttattgcaccgacgctggaacttaaattaggcataggaggtacctcatatgaagatttcattcgcagcatgcatttgcccatgcaattaagtcaggttgatcccattgtggcgtccttttcgggtggggcagtgggtgtcatttcagcattgatgttgattgaagctaacaatgttgagcaacaagagaagaaaaggtgcaagtattgccatggaactgggtatttggcctgtgctagatgttctgcaagtggtgtatgcttgagcgtcaatcctatatcagtatctaatgcatctgaccaacctttgcgagtgcccacaactcagaggtgtttaaattgctccggtgctggaaaggtaatgtgcccaacatgtctgtgcactgggatgatgatggcgagcgaacatgacccacggatagatccatttgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

33.72

Weight (kDa)

7.49

Isoelectric Point (pI)

69.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	545
AccB1I	GGYRCC	1 cut(s)	545
AccII	CGCG	1 cut(s)	130
AciI	CCGC	3 cut(s)	177, 283, 325
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	2 cut(s)	599, 920
AcsI	RAATTY	1 cut(s)	258
AcyI	GRCGYC	2 cut(s)	82, 617
AfaI	GTAC	2 cut(s)	330, 547
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	875
AgsI	TTSAA	2 cut(s)	448, 668
AluBI	AGCT	4 cut(s)	195, 250, 313, 671
AluI	AGCT	4 cut(s)	195, 250, 313, 671
Alw21I	GWGCWC	1 cut(s)	887
Alw26I	GTCTC	2 cut(s)	145, 215
Alw44I	GTGCAC	1 cut(s)	883
AlwI	GGATC	2 cut(s)	599, 920
AoxI	GGCC	3 cut(s)	214, 502, 732
ApaI	GGGCCC	1 cut(s)	218
ApaLI	GTGCAC	1 cut(s)	883
ApeKI	GCWGC	5 cut(s)	5, 75, 247, 250, 570
ApoI	RAATTY	1 cut(s)	258
Asp700I	GAANNNNTTC	1 cut(s)	356
Asp718I	GGTACC	1 cut(s)	545
AspLEI	GCGC	2 cut(s)	132, 470
AspS9I	GGNCC	3 cut(s)	214, 215, 502
AsuC2I	CCSGG	2 cut(s)	174, 218
AsuHPI	GGTGA	1 cut(s)	383
BaeGI	GKGCMC	4 cut(s)	218, 822, 872, 887
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	218
BarI	GAAGNNNNNNTAC	2 cut(s)	440, 472
Bbv12I	GWGCWC	1 cut(s)	887
BbvCI	CCTCAGC	1 cut(s)	314
BbvI	GCAGC	4 cut(s)	87, 237, 259, 582
BccI	CCATC	4 cut(s)	340, 412, 419, 892
BcnI	CCSGG	2 cut(s)	174, 218
BcoDI	GTCTC	2 cut(s)	145, 215
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	1 cut(s)	251
BisI	GCNGC	6 cut(s)	6, 76, 178, 248, 251, 571
BlsI	GCNGC	6 cut(s)	7, 77, 179, 249, 252, 572
Bme1390I	CCNGG	2 cut(s)	174, 218
BmgT120I	GGNCC	3 cut(s)	214, 215, 502
BmiI	GGNNCC	3 cut(s)	216, 503, 547
BmrFI	CCNGG	2 cut(s)	174, 218
BmrI	ACTGGG	2 cut(s)	732, 897
BmsI	GCATC	3 cut(s)	234, 381, 806
BmuI	ACTGGG	2 cut(s)	732, 897
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
Bpu10I	CCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	787
BpuMI	CCSGG	2 cut(s)	174, 218
BsaHI	GRCGYC	2 cut(s)	82, 617
BsaJI	CCNNGG	4 cut(s)	70, 172, 715, 917
BsaWI	WCCGGW	2 cut(s)	336, 848
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	727, 892
BseDI	CCNNGG	4 cut(s)	70, 172, 715, 917
BseGI	GGATG	3 cut(s)	407, 411, 897
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	3 cut(s)	150, 305, 842
BseNI	ACTGG	2 cut(s)	727, 892
BseSI	GKGCMC	4 cut(s)	218, 822, 872, 887
BseXI	GCAGC	4 cut(s)	87, 237, 259, 582
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	216, 504, 734
BshNI	GGYRCC	1 cut(s)	545
BsiHKAI	GWGCWC	1 cut(s)	887
BsiSI	CCGG	4 cut(s)	174, 218, 337, 849
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	145, 215
BsmBI	CGTCTC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	216, 504, 734
Bsp120I	GGGCCC	1 cut(s)	214
Bsp1286I	GDGCHC	4 cut(s)	218, 822, 872, 887
Bsp143I	GATC	2 cut(s)	604, 925
Bsp19I	CCATGG	2 cut(s)	70, 715
BspACI	CCGC	3 cut(s)	177, 283, 325
BspANI	GGCC	3 cut(s)	216, 504, 734
BspCNI	CTCAG	3 cut(s)	151, 306, 841
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	3 cut(s)	216, 503, 547
BspMAI	CTGCAG	1 cut(s)	255
BspPI	GGATC	2 cut(s)	599, 920
BspQI	GCTCTTC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	727, 892
BssECI	CCNNGG	4 cut(s)	70, 172, 715, 917
BssMI	GATC	2 cut(s)	604, 925
BssNI	GRCGYC	2 cut(s)	82, 617
BssT1I	CCWWGG	2 cut(s)	70, 715
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	3 cut(s)	157, 303, 372
BstACI	GRCGYC	2 cut(s)	82, 617
BstAPI	GCANNNNNTGC	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	575, 904
BstDEI	CTNAG	3 cut(s)	159, 314, 828
BstDSI	CCRYGG	3 cut(s)	70, 715, 917
BstF5I	GGATG	3 cut(s)	407, 411, 897
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	132, 470
BstKTI	GATC	2 cut(s)	607, 928
BstMAI	GTCTC	2 cut(s)	145, 215
BstMBI	GATC	2 cut(s)	604, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 331, 711
BstNSI	RCATGY	2 cut(s)	577, 879
BstSCI	CCNGG	2 cut(s)	172, 216
BstSFI	CTRYAG	1 cut(s)	251
BstSLI	GKGCMC	4 cut(s)	218, 822, 872, 887
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	4 cut(s)	87, 237, 259, 582
BstX2I	RGATCY	1 cut(s)	925
BstXI	CCANNNNNNTGG	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	925
BsuRI	GGCC	3 cut(s)	216, 504, 734
BtgI	CCRYGG	3 cut(s)	70, 715, 917
BtsCI	GGATG	3 cut(s)	407, 411, 897
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	642, 885
Cac8I	GCNNGC	2 cut(s)	575, 904
CfoI	GCGC	2 cut(s)	132, 470
Cfr13I	GGNCC	3 cut(s)	214, 215, 502
CseI	GACGC	4 cut(s)	90, 526, 606, 760
Csp6I	GTAC	2 cut(s)	329, 546
CviAII	CATG	7 cut(s)	71, 304, 574, 586, 716, 876, 911
CviJI	RGCY	8 cut(s)	5, 195, 216, 250, 313, 504, 671, 734
CviKI_1	RGCY	8 cut(s)	5, 195, 216, 250, 313, 504, 671, 734
CviQI	GTAC	2 cut(s)	329, 546
DdeI	CTNAG	3 cut(s)	159, 314, 828
DpnI	GATC	2 cut(s)	606, 927
DpnII	GATC	2 cut(s)	604, 925
DraI	TTTAAA	1 cut(s)	840
Eam1104I	CTCTTC	3 cut(s)	157, 303, 372
EarI	CTCTTC	3 cut(s)	157, 303, 372
EciI	GGCGGA	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	70, 715
Eco24I	GRGCYC	1 cut(s)	218
EcoO109I	RGGNCCY	2 cut(s)	214, 502
EcoT14I	CCWWGG	2 cut(s)	70, 715
EcoT22I	ATGCAT	2 cut(s)	579, 799
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	2 cut(s)	70, 715
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	7 cut(s)	74, 307, 577, 589, 719, 879, 914
FatI	CATG	7 cut(s)	70, 303, 573, 585, 715, 875, 910
FauI	CCCGC	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	553
Fnu4HI	GCNGC	6 cut(s)	6, 76, 178, 248, 251, 571
FokI	GGATG	3 cut(s)	394, 398, 904
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	6 cut(s)	6, 76, 178, 248, 251, 571
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	2 cut(s)	131, 469
GluI	GCNGC	6 cut(s)	6, 76, 178, 248, 251, 571
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	216, 504, 734
HapII	CCGG	4 cut(s)	174, 218, 337, 849
HgaI	GACGC	4 cut(s)	90, 526, 606, 760
HhaI	GCGC	2 cut(s)	132, 470
Hin1I	GRCGYC	2 cut(s)	82, 617
Hin1II	CATG	7 cut(s)	74, 307, 577, 589, 719, 879, 914
Hin6I	GCGC	2 cut(s)	130, 468
HinP1I	GCGC	2 cut(s)	130, 468
HinfI	GANTC	2 cut(s)	138, 380
HpaII	CCGG	4 cut(s)	174, 218, 337, 849
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	885
Hpy188I	TCNGA	4 cut(s)	160, 243, 802, 831
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	885
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	2 cut(s)	346, 435
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 331, 711
HpyF3I	CTNAG	3 cut(s)	159, 314, 828
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	2 cut(s)	82, 617
Hsp92II	CATG	7 cut(s)	74, 307, 577, 589, 719, 879, 914
HspAI	GCGC	2 cut(s)	130, 468
KpnI	GGTACC	1 cut(s)	549
Kzo9I	GATC	2 cut(s)	604, 925
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	851
Lsp1109I	GCAGC	4 cut(s)	87, 237, 259, 582
LweI	GCATC	3 cut(s)	234, 381, 806
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	2 cut(s)	606, 927
MboI	GATC	2 cut(s)	604, 925
MboII	GAAGA	6 cut(s)	144, 147, 320, 389, 569, 706
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	4 cut(s)	218, 822, 872, 887
MluCI	AATT	6 cut(s)	48, 258, 489, 530, 590, 841
MlyI	GAGTC	2 cut(s)	147, 389
Mph1103I	ATGCAT	2 cut(s)	579, 799
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	3 cut(s)	528, 593, 839
MslI	CAYNNNNRTG	2 cut(s)	880, 890
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	4 cut(s)	174, 218, 337, 849
MspR9I	CCNGG	2 cut(s)	174, 218
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	3 cut(s)	81, 331, 711
NciI	CCSGG	2 cut(s)	174, 218
NcoI	CCATGG	2 cut(s)	70, 715
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	2 cut(s)	604, 925
NlaIII	CATG	7 cut(s)	74, 307, 577, 589, 719, 879, 914
NlaIV	GGNNCC	3 cut(s)	216, 503, 547
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	2 cut(s)	579, 799
NspI	RCATGY	2 cut(s)	577, 879
PaeI	GCATGC	1 cut(s)	577
PciI	ACATGT	1 cut(s)	875
PciSI	GCTCTTC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	356
PkrI	GCNGC	6 cut(s)	7, 77, 179, 249, 252, 572
PleI	GAGTC	2 cut(s)	146, 388
PpsI	GAGTC	2 cut(s)	146, 388
PscI	ACATGT	1 cut(s)	875
Psp1406I	AACGTT	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	3 cut(s)	216, 503, 547
PspOMI	GGGCCC	1 cut(s)	214
PspPI	GGNCC	3 cut(s)	214, 215, 502
PstI	CTGCAG	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	925
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	2 cut(s)	330, 547
RsaNI	GTAC	2 cut(s)	329, 546
RseI	CAYNNNNRTG	2 cut(s)	880, 890
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	528, 593, 839
SatI	GCNGC	6 cut(s)	6, 76, 178, 248, 251, 571
Sau3AI	GATC	2 cut(s)	604, 925
Sau96I	GGNCC	3 cut(s)	214, 215, 502
SchI	GAGTC	2 cut(s)	147, 389
ScrFI	CCNGG	2 cut(s)	174, 218
SduI	GDGCHC	4 cut(s)	218, 822, 872, 887
SfaNI	GCATC	3 cut(s)	234, 381, 806
SfcI	CTRYAG	1 cut(s)	251
SmiMI	CAYNNNNRTG	2 cut(s)	880, 890
SmlI	CTYRAG	1 cut(s)	766
SmoI	CTYRAG	1 cut(s)	766
SphI	GCATGC	1 cut(s)	577
Sse9I	AATT	6 cut(s)	48, 258, 489, 530, 590, 841
SsiI	CCGC	3 cut(s)	177, 283, 325
SspMI	CTAG	1 cut(s)	741
StyD4I	CCNGG	2 cut(s)	172, 216
StyI	CCWWGG	2 cut(s)	70, 715
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	360
TasI	AATT	6 cut(s)	48, 258, 489, 530, 590, 841
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	3 cut(s)	528, 593, 839
Tru9I	TTAA	3 cut(s)	528, 593, 839
TscAI	CASTG	2 cut(s)	642, 892
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	5 cut(s)	5, 75, 247, 250, 570
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	553, 570
TspGWI	ACGGA	1 cut(s)	934
TspRI	CASTG	2 cut(s)	642, 892
VneI	GTGCAC	1 cut(s)	883
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	2 cut(s)	577, 879
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	741
Zsp2I	ATGCAT	2 cut(s)	579, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.