Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Forward (+)

29857477 .. 29860048

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCTTCCACCGCCTCTCCCAGATTCCTTCCTCTCCTTCACTTCTCTGATGGTGAGCATAGCAGCTCCAACCATGGCTGCTTTCTCTCTCTCCTCCTCCCCTCCTCCTCCTCCTCCTCCTCTCTCCCTAATTCCTCGCACCTCCTCCTCCCATGGCAGCAGCCGCCTCTCCCTCTCCCTCTCCAAATTCGCCTCCTCGTCGCGTCCCAGAGTCTCCTGTTCCTCTTCTTCTGAGAAATCCTCCCCCGGCGGCGATAACATTCCCAGCTCTTTTTGTATCATAGAGGGGCCGGAGACGGTGCAGGACTTTGTTCAGATGCAGCTGCAGGAAATTCAGGACAACATAAGGAGTAGGCGCAACAAGATTTTTCTGCTCATGGAAGAGCTGAGGAGATTGCGGGTACAGCACCGGATAAAGATGGCGAAGGATTTCGATGAGAGTGGTGAGGAAGAGTCCAATGAGATGCCTGACATTCCATCATCCATCCCTTTTCTCCCTTCTGTGACACCAAAGACATTGAAGCAACTCTACTTCACAAGCGCAACATTCATATCTGGGATAATTGTATTTGGGGGCCTTATTGCACCAACGCTGGAACTTAAATTAGGCATAGGAGGTACCTCATATGAAGATTTCATTCGCAGCATGCATTTGCCCATGCAATTAAGTCAGGTTGATCCCATTGTGGCGTCCTTTTCCGGTGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAACAATGTTGAGCAACAAGAGAAGAAAAGGTGCAAGTATTGCCATGGAACTGGGTATTTGGCCTGTGCTAGATGTTCTGCAAGTGGTGTATGCTTGAGCATCAATCCTATATCAGTATCTAATGCATCTGACCGCCCTTTGCGAGTGCCCACAACTCAGAGGTGTTTAAATTGCTCTGGTGCTGGAAAGGTAATGTGCCCGACATGTCTCTGCACCGGGATGATGATGGCGAGCGAACATGACCCACGGATAGACCCATTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

36.33

Weight (kDa)

6.93

Isoelectric Point (pI)

66.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	617
AccII	CGCG	1 cut(s)	202
AciI	CCGC	5 cut(s)	11, 163, 249, 397, 877
AclWI	GGATC	1 cut(s)	671
AcsI	RAATTY	2 cut(s)	185, 330
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	2 cut(s)	402, 619
AflIII	ACRYGT	1 cut(s)	947
AgsI	TTSAA	2 cut(s)	520, 740
AluBI	AGCT	5 cut(s)	65, 267, 322, 385, 743
AluI	AGCT	5 cut(s)	65, 267, 322, 385, 743
Alw26I	GTCTC	3 cut(s)	217, 287, 956
AlwI	GGATC	1 cut(s)	671
AoxI	GGCC	3 cut(s)	287, 574, 804
ApeKI	GCWGC	7 cut(s)	62, 77, 156, 159, 319, 322, 642
ApoI	RAATTY	2 cut(s)	185, 330
Asp700I	GAANNNNTTC	1 cut(s)	428
Asp718I	GGTACC	1 cut(s)	617
AspLEI	GCGC	2 cut(s)	357, 542
AspS9I	GGNCC	2 cut(s)	287, 574
AsuC2I	CCSGG	2 cut(s)	246, 961
AsuHPI	GGTGA	2 cut(s)	64, 455
BaeGI	GKGCMC	2 cut(s)	894, 944
BanI	GGYRCC	1 cut(s)	617
BarI	GAAGNNNNNNTAC	2 cut(s)	512, 544
BbvCI	CCTCAGC	1 cut(s)	386
BbvI	GCAGC	7 cut(s)	64, 74, 168, 171, 309, 331, 654
BccI	CCATC	5 cut(s)	43, 412, 484, 491, 964
BcnI	CCSGG	2 cut(s)	246, 961
BcoDI	GTCTC	3 cut(s)	217, 287, 956
BfaI	CTAG	1 cut(s)	813
BfmI	CTRYAG	1 cut(s)	323
BisI	GCNGC	9 cut(s)	63, 78, 157, 160, 163, 250, 320, 323, 643
BlsI	GCNGC	9 cut(s)	64, 79, 158, 161, 164, 251, 321, 324, 644
Bme1390I	CCNGG	2 cut(s)	246, 961
BmgT120I	GGNCC	2 cut(s)	287, 574
BmiI	GGNNCC	3 cut(s)	288, 575, 619
BmrFI	CCNGG	2 cut(s)	246, 961
BmrI	ACTGGG	1 cut(s)	804
BmsI	GCATC	4 cut(s)	306, 453, 852, 878
BmuI	ACTGGG	1 cut(s)	804
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
Bpu10I	CCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	859
BpuMI	CCSGG	2 cut(s)	246, 961
BsaHI	GRCGYC	1 cut(s)	689
BsaJI	CCNNGG	5 cut(s)	72, 151, 244, 787, 989
BsaWI	WCCGGW	2 cut(s)	408, 698
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	799
BseDI	CCNNGG	5 cut(s)	72, 151, 244, 787, 989
BseGI	GGATG	3 cut(s)	479, 483, 969
BseMII	CTCAG	3 cut(s)	222, 377, 914
BseNI	ACTGG	1 cut(s)	799
BseSI	GKGCMC	2 cut(s)	894, 944
BseXI	GCAGC	7 cut(s)	64, 74, 168, 171, 309, 331, 654
BseYI	CCCAGC	1 cut(s)	263
BsgI	GTGCAG	2 cut(s)	320, 940
Bsh1236I	CGCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	289, 576, 806
BshNI	GGYRCC	1 cut(s)	617
BsiSI	CCGG	5 cut(s)	246, 290, 409, 699, 960
BslFI	GGGAC	1 cut(s)	189
BsmAI	GTCTC	3 cut(s)	217, 287, 956
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	289, 576, 806
Bsp1286I	GDGCHC	2 cut(s)	894, 944
Bsp143I	GATC	1 cut(s)	676
Bsp19I	CCATGG	3 cut(s)	72, 151, 787
BspACI	CCGC	5 cut(s)	11, 163, 249, 397, 877
BspANI	GGCC	3 cut(s)	289, 576, 806
BspCNI	CTCAG	3 cut(s)	223, 378, 913
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	288, 575, 619
BspMAI	CTGCAG	1 cut(s)	327
BspPI	GGATC	1 cut(s)	671
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	799
BssECI	CCNNGG	5 cut(s)	72, 151, 244, 787, 989
BssMI	GATC	1 cut(s)	676
BssNI	GRCGYC	1 cut(s)	689
BssT1I	CCWWGG	3 cut(s)	72, 151, 787
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	3 cut(s)	229, 375, 444
BstACI	GRCGYC	1 cut(s)	689
BstAPI	GCANNNNNTGC	1 cut(s)	783
BstC8I	GCNNGC	2 cut(s)	647, 976
BstDEI	CTNAG	3 cut(s)	231, 386, 900
BstDSI	CCRYGG	4 cut(s)	72, 151, 787, 989
BstF5I	GGATG	3 cut(s)	479, 483, 969
BstFNI	CGCG	1 cut(s)	202
BstHHI	GCGC	2 cut(s)	357, 542
BstKTI	GATC	1 cut(s)	679
BstMAI	GTCTC	3 cut(s)	217, 287, 956
BstMBI	GATC	1 cut(s)	676
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 162, 403, 783
BstNSI	RCATGY	2 cut(s)	649, 951
BstSCI	CCNGG	2 cut(s)	244, 959
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	2 cut(s)	894, 944
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	7 cut(s)	64, 74, 168, 171, 309, 331, 654
BstXI	CCANNNNNNTGG	1 cut(s)	794
BsuRI	GGCC	3 cut(s)	289, 576, 806
BtgI	CCRYGG	4 cut(s)	72, 151, 787, 989
BtsCI	GGATG	3 cut(s)	479, 483, 969
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	1 cut(s)	714
Cac8I	GCNNGC	2 cut(s)	647, 976
CfoI	GCGC	2 cut(s)	357, 542
Cfr13I	GGNCC	2 cut(s)	287, 574
CseI	GACGC	2 cut(s)	191, 678
Csp6I	GTAC	2 cut(s)	401, 618
CviAII	CATG	8 cut(s)	73, 152, 376, 646, 658, 788, 948, 983
CviQI	GTAC	2 cut(s)	401, 618
DdeI	CTNAG	3 cut(s)	231, 386, 900
DpnI	GATC	1 cut(s)	678
DpnII	GATC	1 cut(s)	676
DraI	TTTAAA	1 cut(s)	912
Eam1104I	CTCTTC	3 cut(s)	229, 375, 444
EarI	CTCTTC	3 cut(s)	229, 375, 444
Eco130I	CCWWGG	3 cut(s)	72, 151, 787
EcoO109I	RGGNCCY	1 cut(s)	574
EcoT14I	CCWWGG	3 cut(s)	72, 151, 787
EcoT22I	ATGCAT	2 cut(s)	651, 871
ErhI	CCWWGG	3 cut(s)	72, 151, 787
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	8 cut(s)	76, 155, 379, 649, 661, 791, 951, 986
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	8 cut(s)	72, 151, 375, 645, 657, 787, 947, 982
FauI	CCCGC	1 cut(s)	390
FauNDI	CATATG	1 cut(s)	625
Fnu4HI	GCNGC	9 cut(s)	63, 78, 157, 160, 163, 250, 320, 323, 643
FokI	GGATG	3 cut(s)	466, 470, 976
Fsp4HI	GCNGC	9 cut(s)	63, 78, 157, 160, 163, 250, 320, 323, 643
FspBI	CTAG	1 cut(s)	813
GlaI	GCGC	2 cut(s)	356, 541
GluI	GCNGC	9 cut(s)	63, 78, 157, 160, 163, 250, 320, 323, 643
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	289, 576, 806
HapII	CCGG	5 cut(s)	246, 290, 409, 699, 960
HgaI	GACGC	2 cut(s)	191, 678
HhaI	GCGC	2 cut(s)	357, 542
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	8 cut(s)	76, 155, 379, 649, 661, 791, 951, 986
Hin6I	GCGC	2 cut(s)	355, 540
HinP1I	GCGC	2 cut(s)	355, 540
HinfI	GANTC	3 cut(s)	23, 210, 452
HpaII	CCGG	5 cut(s)	246, 290, 409, 699, 960
HphI	GGTGA	2 cut(s)	64, 455
Hpy188I	TCNGA	5 cut(s)	48, 232, 315, 874, 903
Hpy188III	TCNNGA	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	4 cut(s)	37, 46, 418, 507
HpyCH4III	ACNGT	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 162, 403, 783
HpyF3I	CTNAG	3 cut(s)	231, 386, 900
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	8 cut(s)	76, 155, 379, 649, 661, 791, 951, 986
HspAI	GCGC	2 cut(s)	355, 540
KpnI	GGTACC	1 cut(s)	621
Kzo9I	GATC	1 cut(s)	676
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	7 cut(s)	64, 74, 168, 171, 309, 331, 654
LweI	GCATC	4 cut(s)	306, 453, 852, 878
MaeI	CTAG	1 cut(s)	813
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	1 cut(s)	678
MboI	GATC	1 cut(s)	676
MboII	GAAGA	6 cut(s)	216, 219, 392, 461, 641, 778
MhlI	GDGCHC	2 cut(s)	894, 944
MluCI	AATT	7 cut(s)	129, 185, 330, 561, 602, 662, 913
MlyI	GAGTC	2 cut(s)	219, 461
MmeI	TCCRAC	1 cut(s)	92
Mph1103I	ATGCAT	2 cut(s)	651, 871
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	3 cut(s)	600, 665, 911
MslI	CAYNNNNRTG	1 cut(s)	962
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	5 cut(s)	246, 290, 409, 699, 960
MspR9I	CCNGG	2 cut(s)	246, 961
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	4 cut(s)	10, 162, 403, 783
NciI	CCSGG	2 cut(s)	246, 961
NcoI	CCATGG	3 cut(s)	72, 151, 787
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	1 cut(s)	676
NlaIII	CATG	8 cut(s)	76, 155, 379, 649, 661, 791, 951, 986
NlaIV	GGNNCC	3 cut(s)	288, 575, 619
NmuCI	GTSAC	1 cut(s)	502
NsiI	ATGCAT	2 cut(s)	651, 871
NspI	RCATGY	2 cut(s)	649, 951
PaeI	GCATGC	1 cut(s)	649
PciI	ACATGT	1 cut(s)	947
PciSI	GCTCTTC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	9 cut(s)	64, 79, 158, 161, 164, 251, 321, 324, 644
PleI	GAGTC	2 cut(s)	218, 460
PpsI	GAGTC	2 cut(s)	218, 460
PscI	ACATGT	1 cut(s)	947
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	3 cut(s)	288, 575, 619
PspPI	GGNCC	2 cut(s)	287, 574
PstI	CTGCAG	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	2 cut(s)	402, 619
RsaNI	GTAC	2 cut(s)	401, 618
RseI	CAYNNNNRTG	1 cut(s)	962
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	600, 665, 911
SatI	GCNGC	9 cut(s)	63, 78, 157, 160, 163, 250, 320, 323, 643
Sau3AI	GATC	1 cut(s)	676
Sau96I	GGNCC	2 cut(s)	287, 574
SchI	GAGTC	2 cut(s)	219, 461
ScrFI	CCNGG	2 cut(s)	246, 961
SduI	GDGCHC	2 cut(s)	894, 944
SfaNI	GCATC	4 cut(s)	306, 453, 852, 878
SfcI	CTRYAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	962
SmlI	CTYRAG	1 cut(s)	838
SmoI	CTYRAG	1 cut(s)	838
SphI	GCATGC	1 cut(s)	649
Sse9I	AATT	7 cut(s)	129, 185, 330, 561, 602, 662, 913
SsiI	CCGC	5 cut(s)	11, 163, 249, 397, 877
SspMI	CTAG	1 cut(s)	813
StyD4I	CCNGG	2 cut(s)	244, 959
StyI	CCWWGG	3 cut(s)	72, 151, 787
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	432
TasI	AATT	7 cut(s)	129, 185, 330, 561, 602, 662, 913
TauI	GCSGC	2 cut(s)	165, 252
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	600, 665, 911
Tru9I	TTAA	3 cut(s)	600, 665, 911
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	7 cut(s)	62, 77, 156, 159, 319, 322, 642
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	538, 625, 642
TspGWI	ACGGA	1 cut(s)	1006
TspRI	CASTG	1 cut(s)	714
XapI	RAATTY	2 cut(s)	185, 330
XceI	RCATGY	2 cut(s)	649, 951
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	1 cut(s)	813
Zsp2I	ATGCAT	2 cut(s)	651, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.