Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

19130838 .. 19134055

Gene Structure 3218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCTGCTTTCTCTCTCTCCTCCTCCTCCCCTCCTCCCCTCTCCCTAATTCCTCGCACCTCCTCCTCCCATGGCAGCAGACGCCTCTCCCTCTCCCTCTCCAAACTCCCCTCCTCCTCCTCCTCGCGCCCCAGAGTCTCCTGTTCCTCTTCTTCTGAGAAATCCTCCCCCGGCGGCGATAACGTTCCCAGCTCTTTTTGTATCATAGAGGGGCCGGAGACGGTGCAGGACTTTGTTCAGATGCAGCTGCAGGAAATTCAGGACAACATAAGGAGTAGGCGGAACAAGATTTTTCTGCTCATGGAAGAGCTGAGGAGATTGCGGGTACAGCACCGGATAAAGATGGCGAAGGATTTCGATGAGAGTGGTGAGGAAGAGTCCAATGAGATGCCTGACATTCCATCATCCATCCCTTTTCTCCCTTCTGTGACACCAAAGACTTTGAAGCAACTCTACCTCACAAGCGCAACATTTATATCTGGGATAATTGTATTTGGGGGCCTTATTGCACCGACGCTGGAACTTAAATTAGGCATAGGAGGTACCTCATATGAAGATTTCATTCGCAGCATGCATTTGCCCATGCAATTAAGTCAGGTTGATCCCATTGTGGCGTCCTTTTCGGGTGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAACAATGTTGAGCAACAAGAGAAGAAAAGGTGCAAGTATTGCCATGGAACTGGGTATTTGGCCTGTGCTAGATGTTCTGCAAGTGGTGTATGCTTGAGCGTCAATCCTATATCAGTATCTAATGCATCTGACCGACCTTTGCGAGTGCCCACAACTCAGAGGTGTTTAAATTGCTCCGGTGCTGGAAAGGTAATGTGCCCAACATGTCTGTGCACTGGGATGATGATGGCGAGCGAGCATGACCCACGGATAGATCCATTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

33.69

Weight (kDa)

7.96

Isoelectric Point (pI)

67.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	542
AccII	CGCG	1 cut(s)	127
AciI	CCGC	3 cut(s)	174, 280, 322
AclI	AACGTT	1 cut(s)	183
AclWI	GGATC	2 cut(s)	596, 917
AcsI	RAATTY	1 cut(s)	255
AcyI	GRCGYC	2 cut(s)	82, 614
AfaI	GTAC	2 cut(s)	327, 544
AflIII	ACRYGT	1 cut(s)	872
AgsI	TTSAA	2 cut(s)	445, 665
AluBI	AGCT	4 cut(s)	192, 247, 310, 668
AluI	AGCT	4 cut(s)	192, 247, 310, 668
Alw21I	GWGCWC	1 cut(s)	884
Alw26I	GTCTC	2 cut(s)	142, 212
Alw44I	GTGCAC	1 cut(s)	880
AlwI	GGATC	2 cut(s)	596, 917
AoxI	GGCC	3 cut(s)	212, 499, 729
ApaLI	GTGCAC	1 cut(s)	880
ApeKI	GCWGC	5 cut(s)	5, 75, 244, 247, 567
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	542
AspLEI	GCGC	2 cut(s)	129, 467
AspS9I	GGNCC	2 cut(s)	212, 499
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	380
BaeGI	GKGCMC	3 cut(s)	819, 869, 884
BanI	GGYRCC	1 cut(s)	542
BarI	GAAGNNNNNNTAC	2 cut(s)	437, 469
Bbv12I	GWGCWC	1 cut(s)	884
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	4 cut(s)	87, 234, 256, 579
BccI	CCATC	4 cut(s)	337, 409, 416, 889
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	142, 212
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	1 cut(s)	248
BisI	GCNGC	6 cut(s)	6, 76, 175, 245, 248, 568
BlsI	GCNGC	6 cut(s)	7, 77, 176, 246, 249, 569
Bme1390I	CCNGG	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	212, 499
BmiI	GGNNCC	3 cut(s)	213, 500, 544
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	2 cut(s)	729, 894
BmsI	GCATC	3 cut(s)	231, 378, 803
BmuI	ACTGGG	2 cut(s)	729, 894
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bpu10I	CCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	784
BpuMI	CCSGG	1 cut(s)	171
BsaHI	GRCGYC	2 cut(s)	82, 614
BsaJI	CCNNGG	4 cut(s)	70, 169, 712, 914
BsaWI	WCCGGW	2 cut(s)	333, 845
Bse1I	ACTGG	2 cut(s)	724, 889
BseDI	CCNNGG	4 cut(s)	70, 169, 712, 914
BseGI	GGATG	3 cut(s)	404, 408, 894
BseMII	CTCAG	3 cut(s)	147, 302, 839
BseNI	ACTGG	2 cut(s)	724, 889
BseSI	GKGCMC	3 cut(s)	819, 869, 884
BseXI	GCAGC	4 cut(s)	87, 234, 256, 579
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	214, 501, 731
BshNI	GGYRCC	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	884
BsiSI	CCGG	4 cut(s)	171, 215, 334, 846
BsmAI	GTCTC	2 cut(s)	142, 212
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	214, 501, 731
Bsp1286I	GDGCHC	3 cut(s)	819, 869, 884
Bsp143I	GATC	2 cut(s)	601, 922
Bsp19I	CCATGG	2 cut(s)	70, 712
BspACI	CCGC	3 cut(s)	174, 280, 322
BspANI	GGCC	3 cut(s)	214, 501, 731
BspCNI	CTCAG	3 cut(s)	148, 303, 838
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	3 cut(s)	213, 500, 544
BspMAI	CTGCAG	1 cut(s)	252
BspPI	GGATC	2 cut(s)	596, 917
BspQI	GCTCTTC	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	724, 889
BssECI	CCNNGG	4 cut(s)	70, 169, 712, 914
BssMI	GATC	2 cut(s)	601, 922
BssNI	GRCGYC	2 cut(s)	82, 614
BssT1I	CCWWGG	2 cut(s)	70, 712
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	3 cut(s)	154, 300, 369
BstACI	GRCGYC	2 cut(s)	82, 614
BstAPI	GCANNNNNTGC	1 cut(s)	708
BstC8I	GCNNGC	3 cut(s)	572, 901, 905
BstDEI	CTNAG	3 cut(s)	156, 311, 825
BstDSI	CCRYGG	3 cut(s)	70, 712, 914
BstF5I	GGATG	3 cut(s)	404, 408, 894
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	129, 467
BstKTI	GATC	2 cut(s)	604, 925
BstMAI	GTCTC	2 cut(s)	142, 212
BstMBI	GATC	2 cut(s)	601, 922
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 328, 708
BstNSI	RCATGY	2 cut(s)	574, 876
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	248
BstSLI	GKGCMC	3 cut(s)	819, 869, 884
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	4 cut(s)	87, 234, 256, 579
BstX2I	RGATCY	1 cut(s)	922
BstXI	CCANNNNNNTGG	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	922
BsuRI	GGCC	3 cut(s)	214, 501, 731
BtgI	CCRYGG	3 cut(s)	70, 712, 914
BtsCI	GGATG	3 cut(s)	404, 408, 894
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	639, 882
Cac8I	GCNNGC	3 cut(s)	572, 901, 905
CfoI	GCGC	2 cut(s)	129, 467
Cfr13I	GGNCC	2 cut(s)	212, 499
CseI	GACGC	4 cut(s)	90, 523, 603, 757
Csp6I	GTAC	2 cut(s)	326, 543
CviAII	CATG	7 cut(s)	71, 301, 571, 583, 713, 873, 908
CviJI	RGCY	8 cut(s)	5, 192, 214, 247, 310, 501, 668, 731
CviKI_1	RGCY	8 cut(s)	5, 192, 214, 247, 310, 501, 668, 731
CviQI	GTAC	2 cut(s)	326, 543
DdeI	CTNAG	3 cut(s)	156, 311, 825
DpnI	GATC	2 cut(s)	603, 924
DpnII	GATC	2 cut(s)	601, 922
DraI	TTTAAA	1 cut(s)	837
Eam1104I	CTCTTC	3 cut(s)	154, 300, 369
EarI	CTCTTC	3 cut(s)	154, 300, 369
EciI	GGCGGA	1 cut(s)	295
Eco130I	CCWWGG	2 cut(s)	70, 712
EcoO109I	RGGNCCY	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	70, 712
EcoT22I	ATGCAT	2 cut(s)	576, 796
ErhI	CCWWGG	2 cut(s)	70, 712
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	7 cut(s)	74, 304, 574, 586, 716, 876, 911
FatI	CATG	7 cut(s)	70, 300, 570, 582, 712, 872, 907
FauI	CCCGC	1 cut(s)	315
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	6 cut(s)	6, 76, 175, 245, 248, 568
FokI	GGATG	3 cut(s)	391, 395, 901
Fsp4HI	GCNGC	6 cut(s)	6, 76, 175, 245, 248, 568
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	2 cut(s)	128, 466
GluI	GCNGC	6 cut(s)	6, 76, 175, 245, 248, 568
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	214, 501, 731
HapII	CCGG	4 cut(s)	171, 215, 334, 846
HgaI	GACGC	4 cut(s)	90, 523, 603, 757
HhaI	GCGC	2 cut(s)	129, 467
Hin1I	GRCGYC	2 cut(s)	82, 614
Hin1II	CATG	7 cut(s)	74, 304, 574, 586, 716, 876, 911
Hin6I	GCGC	2 cut(s)	127, 465
HinP1I	GCGC	2 cut(s)	127, 465
HinfI	GANTC	2 cut(s)	135, 377
HpaII	CCGG	4 cut(s)	171, 215, 334, 846
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	882
Hpy188I	TCNGA	4 cut(s)	157, 240, 799, 828
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	882
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	2 cut(s)	343, 432
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 328, 708
HpyF3I	CTNAG	3 cut(s)	156, 311, 825
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	2 cut(s)	82, 614
Hsp92II	CATG	7 cut(s)	74, 304, 574, 586, 716, 876, 911
HspAI	GCGC	2 cut(s)	127, 465
KpnI	GGTACC	1 cut(s)	546
Kzo9I	GATC	2 cut(s)	601, 922
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	848
Lsp1109I	GCAGC	4 cut(s)	87, 234, 256, 579
LweI	GCATC	3 cut(s)	231, 378, 803
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	603, 924
MboI	GATC	2 cut(s)	601, 922
MboII	GAAGA	6 cut(s)	141, 144, 317, 386, 566, 703
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	3 cut(s)	819, 869, 884
MluCI	AATT	6 cut(s)	48, 255, 486, 527, 587, 838
MlyI	GAGTC	2 cut(s)	144, 386
Mph1103I	ATGCAT	2 cut(s)	576, 796
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	3 cut(s)	525, 590, 836
MslI	CAYNNNNRTG	2 cut(s)	877, 887
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	4 cut(s)	171, 215, 334, 846
MspR9I	CCNGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	3 cut(s)	81, 328, 708
NciI	CCSGG	1 cut(s)	171
NcoI	CCATGG	2 cut(s)	70, 712
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	2 cut(s)	601, 922
NlaIII	CATG	7 cut(s)	74, 304, 574, 586, 716, 876, 911
NlaIV	GGNNCC	3 cut(s)	213, 500, 544
NmuCI	GTSAC	1 cut(s)	427
NsiI	ATGCAT	2 cut(s)	576, 796
NspI	RCATGY	2 cut(s)	574, 876
PaeI	GCATGC	1 cut(s)	574
PciI	ACATGT	1 cut(s)	872
PciSI	GCTCTTC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	353
PkrI	GCNGC	6 cut(s)	7, 77, 176, 246, 249, 569
PleI	GAGTC	2 cut(s)	143, 385
PpsI	GAGTC	2 cut(s)	143, 385
PscI	ACATGT	1 cut(s)	872
Psp1406I	AACGTT	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	188
PspN4I	GGNNCC	3 cut(s)	213, 500, 544
PspPI	GGNCC	2 cut(s)	212, 499
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	922
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	327, 544
RsaNI	GTAC	2 cut(s)	326, 543
RseI	CAYNNNNRTG	2 cut(s)	877, 887
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	525, 590, 836
SatI	GCNGC	6 cut(s)	6, 76, 175, 245, 248, 568
Sau3AI	GATC	2 cut(s)	601, 922
Sau96I	GGNCC	2 cut(s)	212, 499
SchI	GAGTC	2 cut(s)	144, 386
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	3 cut(s)	819, 869, 884
SfaNI	GCATC	3 cut(s)	231, 378, 803
SfcI	CTRYAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	877, 887
SmlI	CTYRAG	1 cut(s)	763
SmoI	CTYRAG	1 cut(s)	763
SphI	GCATGC	1 cut(s)	574
Sse9I	AATT	6 cut(s)	48, 255, 486, 527, 587, 838
SsiI	CCGC	3 cut(s)	174, 280, 322
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	2 cut(s)	70, 712
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	357
TaqII	GACCGA	1 cut(s)	816
TasI	AATT	6 cut(s)	48, 255, 486, 527, 587, 838
TauI	GCSGC	1 cut(s)	177
Tru1I	TTAA	3 cut(s)	525, 590, 836
Tru9I	TTAA	3 cut(s)	525, 590, 836
TscAI	CASTG	2 cut(s)	639, 889
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	5 cut(s)	5, 75, 244, 247, 567
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	550, 567
TspGWI	ACGGA	1 cut(s)	931
TspRI	CASTG	2 cut(s)	639, 889
VneI	GTGCAC	1 cut(s)	880
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	2 cut(s)	574, 876
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	738
Zsp2I	ATGCAT	2 cut(s)	576, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.