Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

2579732 .. 2580942

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1029400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTTCTTTCTCTCTCAGCTCTCATCCTCCCCCTTCCTCCAAAGCCCTAATTCCCTCCTCCACCTCAGCCCATGGAATCCCTAGACCTCTCTCTCTGTCCAAATTCATCTCCCCGCGTCCCCAAATTTCCTGTTCTGCTTCCAAGGAATCCTCCCCCGCCGATAACACGCCAAGCACTTTTTGTATCATAGAAGGGCCGGAGACGGTGCAGGACTTTGTGCAGATGCAACTGCAGGAAATTCAGGACAACATAAGAAGCCGGCGCAACAAGATTTTTCTTCTCATGGAAGAGCTAAGGAGATTGCGGGTGCAGCACCGGATAAGGATGGCGAAGGATATGGATGCGGCTTGTGAGGAAGAGTCAAATGAGATGCCTGACATTCCATCCACTATCCCTTTTCTCCCTCATATTGTGAGTTTAATCGTTAACCGCCTTAAGTTTGCCCCTTATCGACATCCTCAAACAAGTTGGGAAATTTGGATACAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.64

Weight (kDa)

7.79

Isoelectric Point (pI)

78.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	118
AciI	CCGC	5 cut(s)	116, 159, 307, 347, 433
AcsI	RAATTY	4 cut(s)	104, 126, 240, 477
AflII	CTTAAG	1 cut(s)	437
AluBI	AGCT	2 cut(s)	21, 295
AluI	AGCT	2 cut(s)	21, 295
Alw26I	GTCTC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	4 cut(s)	104, 126, 240, 477
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	197
BbvCI	CCTCAGC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	322, 394
BciVI	GTATCC	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	2 cut(s)	314, 348
BlsI	GCNGC	2 cut(s)	315, 349
BmgT120I	GGNCC	1 cut(s)	197
BmsI	GCATC	3 cut(s)	216, 334, 363
Bpu10I	CCTNAGC	2 cut(s)	67, 296
BsaBI	GATNNNNATC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	73, 144
BsaWI	WCCGGW	1 cut(s)	318
Bse118I	RCCGGY	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	73, 144
BseGI	GGATG	5 cut(s)	25, 333, 349, 386, 457
BseJI	GATNNNNATC	1 cut(s)	488
BseMII	CTCAG	2 cut(s)	31, 81
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	325
BsgI	GTGCAG	3 cut(s)	230, 242, 332
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	199
BsiSI	CCGG	3 cut(s)	200, 262, 319
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	5 cut(s)	116, 159, 307, 347, 433
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	2 cut(s)	30, 80
BspFNI	CGCG	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	237
BspQI	GCTCTTC	1 cut(s)	285
BspTI	CTTAAG	1 cut(s)	437
BsrFI	RCCGGY	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	73, 144
BssT1I	CCWWGG	2 cut(s)	73, 144
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	285, 354
BstAFI	CTTAAG	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	17, 67, 296
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	5 cut(s)	25, 333, 349, 386, 457
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	5 cut(s)	25, 333, 349, 386, 457
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	1 cut(s)	107
CviAII	CATG	2 cut(s)	74, 286
CviJI	RGCY	8 cut(s)	5, 21, 47, 71, 199, 261, 295, 350
CviKI_1	RGCY	8 cut(s)	5, 21, 47, 71, 199, 261, 295, 350
DdeI	CTNAG	3 cut(s)	17, 67, 296
Eam1104I	CTCTTC	2 cut(s)	285, 354
EarI	CTCTTC	2 cut(s)	285, 354
Eco130I	CCWWGG	2 cut(s)	73, 144
EcoT14I	CCWWGG	2 cut(s)	73, 144
ErhI	CCWWGG	2 cut(s)	73, 144
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	2 cut(s)	77, 289
FaiI	YATR	6 cut(s)	75, 191, 254, 287, 341, 411
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	73, 285
FauI	CCCGC	3 cut(s)	123, 166, 300
Fnu4HI	GCNGC	2 cut(s)	314, 348
FokI	GGATG	5 cut(s)	12, 340, 356, 373, 444
Fsp4HI	GCNGC	2 cut(s)	314, 348
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	2 cut(s)	314, 348
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	3 cut(s)	200, 262, 319
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	77, 289
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	78, 149, 362
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	3 cut(s)	200, 262, 319
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	3 cut(s)	45, 188, 328
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	5 cut(s)	211, 223, 229, 235, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	3 cut(s)	17, 67, 296
Hsp92II	CATG	2 cut(s)	77, 289
HspAI	GCGC	1 cut(s)	265
KroI	GCCGGC	1 cut(s)	261
KroNI	GCCGGC	1 cut(s)	263
KspAI	GTTAAC	1 cut(s)	430
LguI	GCTCTTC	1 cut(s)	285
LpnPI	CCDG	8 cut(s)	145, 197, 213, 221, 230, 275, 332, 390
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	3 cut(s)	216, 334, 363
MaeI	CTAG	1 cut(s)	84
MboII	GAAGA	3 cut(s)	272, 302, 371
MluCI	AATT	5 cut(s)	51, 104, 126, 240, 477
MlyI	GAGTC	1 cut(s)	371
MroNI	GCCGGC	1 cut(s)	261
MseI	TTAA	3 cut(s)	422, 429, 438
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	3 cut(s)	200, 262, 319
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	313
NaeI	GCCGGC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	261
NlaIII	CATG	2 cut(s)	77, 289
PciSI	GCTCTTC	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	78, 149
PkrI	GCNGC	2 cut(s)	315, 349
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	422, 429, 438
SatI	GCNGC	2 cut(s)	314, 348
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	371
SetI	ASST	4 cut(s)	23, 68, 91, 297
SfaNI	GCATC	3 cut(s)	216, 334, 363
SfcI	CTRYAG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	5 cut(s)	51, 104, 126, 240, 477
SsiI	CCGC	5 cut(s)	116, 159, 307, 347, 433
SspMI	CTAG	1 cut(s)	84
StyI	CCWWGG	2 cut(s)	73, 144
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	454
TasI	AATT	5 cut(s)	51, 104, 126, 240, 477
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	78, 149
Tru1I	TTAA	3 cut(s)	422, 429, 438
Tru9I	TTAA	3 cut(s)	422, 429, 438
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	437
XapI	RAATTY	4 cut(s)	104, 126, 240, 477
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.