Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

2577457 .. 2579730

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1029300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCAAAAACACCAAAGACGTTGAAGCAGGTCTACCTTACAAGTTTATCAGTGATATCTACTGTCATTGTATTTGGAGGTCTCATTGCACCATCGCTGGAACTAAAATTAGGCATAGGAGGTACCTCGTATGAAGATTTCATTCGCAGCATGCATCTGCCTTTACAATTAAGTCAGGTTGATCCTATTGTGGCATCCTTCTCCGGTGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAACAATGTTGAGCAACAAGAGAAGAAAAGGTGCAAATATTGCCGTGGAACTGGGTACTTGGCCTGTGCTAGATGTTCTGCAAGTGGTGTGTGCTTGAACATCAATCCTATATCAGCATCTAGTGCAACGGACCGCCCTTTGCGAGTGCCCACAACTGAGAGGTGCCCAAATTGCTCTGGTGCTGGAAAGAGATTTGCAGTTTGTGTTCTTCATGCACTGACTAATCACCTTCCATCATCACTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

17.44

Weight (kDa)

9.13

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
Acc65I	GGTACC	1 cut(s)	122
AccB1I	GGYRCC	2 cut(s)	122, 411
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	382
AclWI	GGATC	1 cut(s)	176
AfaI	GTAC	2 cut(s)	124, 305
AgsI	TTSAA	3 cut(s)	25, 245, 346
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	147
Asp718I	GGTACC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	379
BaeGI	GKGCMC	2 cut(s)	399, 416
BanI	GGYRCC	2 cut(s)	122, 411
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	100, 490
BceAI	ACGGC	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	318, 369
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	124, 413
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	3 cut(s)	163, 203, 374
BmuI	ACTGGG	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	304, 495
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	304, 495
BseSI	GKGCMC	2 cut(s)	399, 416
BseXI	GCAGC	1 cut(s)	159
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	2 cut(s)	122, 411
BsiSI	CCGG	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	399, 416
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	124, 413
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	176
BspT107I	GGYRCC	2 cut(s)	122, 411
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	304, 495
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	64
BstAPI	GCANNNNNTGC	2 cut(s)	288, 371
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	194
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	288, 371, 420
BstNSI	RCATGY	1 cut(s)	154
BstSLI	GKGCMC	2 cut(s)	399, 416
BstV1I	GCAGC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	194
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	4 cut(s)	57, 219, 464, 488
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	379
CpoI	CGGWCCG	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	123, 304
CspI	CGGWCCG	1 cut(s)	379
CviAII	CATG	2 cut(s)	151, 461
CviJI	RGCY	2 cut(s)	248, 311
CviKI_1	RGCY	2 cut(s)	248, 311
CviQI	GTAC	2 cut(s)	123, 304
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	86
Eco32I	GATATC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	379
EcoRV	GATATC	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	156
FaeI	CATG	2 cut(s)	154, 464
FaiI	YATR	5 cut(s)	116, 132, 152, 359, 462
FatI	CATG	2 cut(s)	150, 460
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	2 cut(s)	318, 369
GluI	GCNGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	204
Hin1II	CATG	2 cut(s)	154, 464
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	208, 488
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	7 cut(s)	89, 154, 282, 329, 374, 446, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	288, 371, 420
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	2 cut(s)	154, 464
KpnI	GGTACC	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	9 cut(s)	14, 83, 161, 217, 285, 325, 411, 417, 476
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	3 cut(s)	163, 203, 374
MaeI	CTAG	2 cut(s)	318, 369
MaeII	ACGT	1 cut(s)	20
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	146, 283, 449
MhlI	GDGCHC	2 cut(s)	399, 416
MluCI	AATT	3 cut(s)	107, 167, 418
MnlI	CCTC	4 cut(s)	71, 113, 136, 402
Mph1103I	ATGCAT	1 cut(s)	156
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	493
MspI	CCGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	288, 371, 420
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	154, 464
NlaIV	GGNNCC	2 cut(s)	124, 413
NsiI	ATGCAT	1 cut(s)	156
NspI	RCATGY	1 cut(s)	154
PaeI	GCATGC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	124, 413
PspPI	GGNCC	1 cut(s)	379
RsaI	GTAC	2 cut(s)	124, 305
RsaNI	GTAC	2 cut(s)	123, 304
RseI	CAYNNNNRTG	1 cut(s)	493
Rsr2I	CGGWCCG	1 cut(s)	379
RsrII	CGGWCCG	1 cut(s)	379
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	379
SduI	GDGCHC	2 cut(s)	399, 416
SfaNI	GCATC	3 cut(s)	163, 203, 374
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	493
SphI	GCATGC	1 cut(s)	154
Sse9I	AATT	3 cut(s)	107, 167, 418
SsiI	CCGC	1 cut(s)	382
SspI	AATATT	1 cut(s)	287
SspMI	CTAG	2 cut(s)	318, 369
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	23
TasI	AATT	3 cut(s)	107, 167, 418
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	4 cut(s)	57, 219, 471, 495
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	3 cut(s)	130, 147, 449
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	4 cut(s)	57, 219, 471, 495
VpaK11BI	GGWCC	1 cut(s)	379
XceI	RCATGY	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	2 cut(s)	318, 369
Zsp2I	ATGCAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.