Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

3213139 .. 3216558

Gene Structure 3420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1029100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCTTCTTTCTCACTCACTTCTCATCCTCCCCCTTCCGCCAAAACCCTACTTTCCTCCTCCACCTCCTCCCATGGAATCCCTAGACGTCTCTCTCTGTCCAAATTCACCTCCCCGCGTCCCCAAATTTCCTGTTCTGCTTCCAAGGAATCATCCCCCGGCGATAACACGCCAAGCACTTTTTGTATCATAGAAGGGCCGGAGACGGTGCAGGACTTTGTGCAGATGCAACTGCAGGAAATTCAGGACAACATAAGAAGCCGGCGCAACAAGATTTTTCTTCTCATGGAAGAGCTAAGGAGATTGCGGGTGCAGCACCGGATAAGGATGGCGAGAGATATGGATGAGGCTTGTGAGGAAGAGTCAAATGAGATGCCTGACATTCCATCCACTATCCCTTTTCTCCCTCATATGACACCAAAGACGTTGAAGCAGCTCTACCTCACAAGCTTATCTATGATATCTAGTGTAATTGTATTTGGGGGTCTCATTGCGCCATCGCTGGAACTAAAATTAGGTATAGGAGGTACCTCGTATGAAGATTTCATTCGTAGCATGCATCTGCCTTTACAATTAAGTCAGGTTGATCCTATTGTGGCATCCTTCTCCGGTGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAACAATGTTGAGCAGCAAGAGAAGAAAAGGTGCAAATATTGCCATGGAACTGGGTACTTGGCCTGTGCTAGATGTTCTGCAAGTGGAGTGTGCTTGAACATCAATCCTATATCAGCATCTAGTGCATCGGACCAACCTTTGCGAGTGCCCACAACTGAGAGGTGCCCAAATTGCTCTGGTGCTGGAAAGGTCATGTGCCCGACATGCCTGTGCACTGGGATGATGATGGCAAGCGAGCATGACCCGCGGATTGATCCATTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

33.44

Weight (kDa)

6.65

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	91
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	2 cut(s)	527, 816
AccII	CGCG	2 cut(s)	118, 901
AciI	CCGC	5 cut(s)	39, 116, 307, 899, 901
AclWI	GGATC	2 cut(s)	581, 902
AcsI	RAATTY	3 cut(s)	104, 126, 240
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	2 cut(s)	529, 710
AgsI	TTSAA	3 cut(s)	430, 650, 751
AluBI	AGCT	4 cut(s)	295, 436, 450, 653
AluI	AGCT	4 cut(s)	295, 436, 450, 653
Alw21I	GWGCWC	1 cut(s)	869
Alw26I	GTCTC	3 cut(s)	95, 197, 491
Alw44I	GTGCAC	1 cut(s)	865
AlwI	GGATC	2 cut(s)	581, 902
AoxI	GGCC	2 cut(s)	197, 714
ApaLI	GTGCAC	1 cut(s)	865
ApeKI	GCWGC	3 cut(s)	313, 433, 667
ApoI	RAATTY	3 cut(s)	104, 126, 240
Asp718I	GGTACC	1 cut(s)	527
AspLEI	GCGC	2 cut(s)	267, 496
AspS9I	GGNCC	2 cut(s)	197, 784
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	784
BaeGI	GKGCMC	4 cut(s)	804, 821, 854, 869
BanI	GGYRCC	2 cut(s)	527, 816
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
Bbv12I	GWGCWC	1 cut(s)	869
BbvI	GCAGC	3 cut(s)	325, 445, 679
BccI	CCATC	4 cut(s)	322, 394, 505, 874
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	3 cut(s)	95, 197, 491
BfaI	CTAG	4 cut(s)	84, 465, 723, 774
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	3 cut(s)	314, 434, 668
BlsI	GCNGC	3 cut(s)	315, 435, 669
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	784
BmgT120I	GGNCC	2 cut(s)	197, 784
BmiI	GGNNCC	2 cut(s)	529, 818
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	2 cut(s)	714, 879
BmsI	GCATC	6 cut(s)	216, 363, 568, 608, 779, 788
BmuI	ACTGGG	2 cut(s)	714, 879
Bpu10I	CCTNAGC	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	5 cut(s)	73, 144, 157, 697, 899
BsaWI	WCCGGW	2 cut(s)	318, 608
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	2 cut(s)	709, 874
Bse3DI	GCAATG	1 cut(s)	489
BseDI	CCNNGG	5 cut(s)	73, 144, 157, 697, 899
BseGI	GGATG	7 cut(s)	25, 152, 333, 349, 386, 599, 879
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	2 cut(s)	709, 874
BseRI	GAGGAG	2 cut(s)	49, 58
BseSI	GKGCMC	4 cut(s)	804, 821, 854, 869
BseXI	GCAGC	3 cut(s)	325, 445, 679
BsgI	GTGCAG	3 cut(s)	230, 242, 332
Bsh1236I	CGCG	2 cut(s)	118, 901
BshFI	GGCC	2 cut(s)	199, 716
BshNI	GGYRCC	2 cut(s)	527, 816
BsiHKAI	GWGCWC	1 cut(s)	869
BsiSI	CCGG	5 cut(s)	159, 200, 262, 319, 609
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	3 cut(s)	95, 197, 491
BsmBI	CGTCTC	2 cut(s)	95, 197
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	199, 716
Bso31I	GGTCTC	1 cut(s)	491
Bsp1286I	GDGCHC	4 cut(s)	804, 821, 854, 869
Bsp143I	GATC	2 cut(s)	586, 907
Bsp19I	CCATGG	2 cut(s)	73, 697
BspACI	CCGC	5 cut(s)	39, 116, 307, 899, 901
BspANI	GGCC	2 cut(s)	199, 716
BspCNI	CTCAG	1 cut(s)	802
BspFNI	CGCG	2 cut(s)	118, 901
BspLI	GGNNCC	2 cut(s)	529, 818
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	2 cut(s)	581, 902
BspQI	GCTCTTC	1 cut(s)	285
BspT107I	GGYRCC	2 cut(s)	527, 816
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	709, 874
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	5 cut(s)	73, 144, 157, 697, 899
BssMI	GATC	2 cut(s)	586, 907
BssNI	GRCGYC	1 cut(s)	88
BssT1I	CCWWGG	3 cut(s)	73, 144, 697
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	285, 354
BstACI	GRCGYC	1 cut(s)	88
BstAPI	GCANNNNNTGC	2 cut(s)	693, 776
BstC8I	GCNNGC	4 cut(s)	263, 557, 886, 890
BstDEI	CTNAG	2 cut(s)	296, 810
BstDSI	CCRYGG	3 cut(s)	73, 697, 899
BstF5I	GGATG	7 cut(s)	25, 152, 333, 349, 386, 599, 879
BstFNI	CGCG	2 cut(s)	118, 901
BstHHI	GCGC	2 cut(s)	267, 496
BstKTI	GATC	2 cut(s)	589, 910
BstMAI	GTCTC	3 cut(s)	95, 197, 491
BstMBI	GATC	2 cut(s)	586, 907
BstMWI	GCNNNNNNNGC	6 cut(s)	313, 693, 776, 825, 858, 898
BstNSI	RCATGY	2 cut(s)	559, 861
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	4 cut(s)	804, 821, 854, 869
BstUI	CGCG	2 cut(s)	118, 901
BstV1I	GCAGC	3 cut(s)	325, 445, 679
BstXI	CCANNNNNNTGG	1 cut(s)	704
BsuRI	GGCC	2 cut(s)	199, 716
BtgI	CCRYGG	3 cut(s)	73, 697, 899
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	7 cut(s)	25, 152, 333, 349, 386, 599, 879
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	2 cut(s)	624, 867
Cac8I	GCNNGC	4 cut(s)	263, 557, 886, 890
CfoI	GCGC	2 cut(s)	267, 496
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	197, 784
Cfr42I	CCGCGG	1 cut(s)	902
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	528, 709
CviAII	CATG	7 cut(s)	74, 286, 556, 698, 847, 858, 893
CviJI	RGCY	9 cut(s)	5, 199, 261, 295, 350, 436, 450, 653, 716
CviKI_1	RGCY	9 cut(s)	5, 199, 261, 295, 350, 436, 450, 653, 716
CviQI	GTAC	2 cut(s)	528, 709
DdeI	CTNAG	2 cut(s)	296, 810
DpnI	GATC	2 cut(s)	588, 909
DpnII	GATC	2 cut(s)	586, 907
Eam1104I	CTCTTC	2 cut(s)	285, 354
EarI	CTCTTC	2 cut(s)	285, 354
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	3 cut(s)	73, 144, 697
Eco31I	GGTCTC	1 cut(s)	491
Eco32I	GATATC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	784
EcoRV	GATATC	1 cut(s)	462
EcoT14I	CCWWGG	3 cut(s)	73, 144, 697
EcoT22I	ATGCAT	1 cut(s)	561
ErhI	CCWWGG	3 cut(s)	73, 144, 697
Esp3I	CGTCTC	2 cut(s)	95, 197
FaeI	CATG	7 cut(s)	77, 289, 559, 701, 850, 861, 896
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	7 cut(s)	73, 285, 555, 697, 846, 857, 892
FauI	CCCGC	3 cut(s)	123, 300, 906
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	314, 434, 668
FokI	GGATG	7 cut(s)	12, 139, 340, 356, 373, 586, 886
Fsp4HI	GCNGC	3 cut(s)	314, 434, 668
FspBI	CTAG	4 cut(s)	84, 465, 723, 774
GlaI	GCGC	2 cut(s)	266, 495
GluI	GCNGC	3 cut(s)	314, 434, 668
HaeIII	GGCC	2 cut(s)	199, 716
HapII	CCGG	5 cut(s)	159, 200, 262, 319, 609
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	267, 496
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	7 cut(s)	77, 289, 559, 701, 850, 861, 896
Hin6I	GCGC	2 cut(s)	265, 494
HinP1I	GCGC	2 cut(s)	265, 494
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	3 cut(s)	78, 149, 362
HpaII	CCGG	5 cut(s)	159, 200, 262, 319, 609
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	867
Hpy188I	TCNGA	1 cut(s)	784
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	867
HpyAV	CCTTC	3 cut(s)	45, 188, 613
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	88, 425
HpyF10VI	GCNNNNNNNGC	6 cut(s)	313, 693, 776, 825, 858, 898
HpyF3I	CTNAG	2 cut(s)	296, 810
HpySE526I	ACGT	2 cut(s)	88, 425
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	7 cut(s)	77, 289, 559, 701, 850, 861, 896
HspAI	GCGC	2 cut(s)	265, 494
KpnI	GGTACC	1 cut(s)	531
KroI	GCCGGC	1 cut(s)	261
KroNI	GCCGGC	1 cut(s)	263
KspI	CCGCGG	1 cut(s)	902
Kzo9I	GATC	2 cut(s)	586, 907
LguI	GCTCTTC	1 cut(s)	285
Lsp1109I	GCAGC	3 cut(s)	325, 445, 679
LweI	GCATC	6 cut(s)	216, 363, 568, 608, 779, 788
MaeI	CTAG	4 cut(s)	84, 465, 723, 774
MaeII	ACGT	2 cut(s)	88, 425
MalI	GATC	2 cut(s)	588, 909
MboI	GATC	2 cut(s)	586, 907
MboII	GAAGA	5 cut(s)	272, 302, 371, 551, 688
MhlI	GDGCHC	4 cut(s)	804, 821, 854, 869
MluCI	AATT	7 cut(s)	104, 126, 240, 471, 512, 572, 823
MlyI	GAGTC	1 cut(s)	371
Mph1103I	ATGCAT	1 cut(s)	561
MroNI	GCCGGC	1 cut(s)	261
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	2 cut(s)	862, 872
MspA1I	CMGCKG	1 cut(s)	901
MspI	CCGG	5 cut(s)	159, 200, 262, 319, 609
MspR9I	CCNGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	118, 901
MwoI	GCNNNNNNNGC	6 cut(s)	313, 693, 776, 825, 858, 898
NaeI	GCCGGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	2 cut(s)	73, 697
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	2 cut(s)	586, 907
NgoMIV	GCCGGC	1 cut(s)	261
NlaIII	CATG	7 cut(s)	77, 289, 559, 701, 850, 861, 896
NlaIV	GGNNCC	2 cut(s)	529, 818
NsiI	ATGCAT	1 cut(s)	561
NspI	RCATGY	2 cut(s)	559, 861
PaeI	GCATGC	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	78, 149
PkrI	GCNGC	3 cut(s)	315, 435, 669
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	529, 818
PspPI	GGNCC	2 cut(s)	197, 784
PstI	CTGCAG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	529, 710
RsaNI	GTAC	2 cut(s)	528, 709
RseI	CAYNNNNRTG	2 cut(s)	862, 872
SacII	CCGCGG	1 cut(s)	902
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	3 cut(s)	314, 434, 668
Sau3AI	GATC	2 cut(s)	586, 907
Sau96I	GGNCC	2 cut(s)	197, 784
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	4 cut(s)	804, 821, 854, 869
SfaNI	GCATC	6 cut(s)	216, 363, 568, 608, 779, 788
SfcI	CTRYAG	1 cut(s)	233
Sfr303I	CCGCGG	1 cut(s)	902
SgrBI	CCGCGG	1 cut(s)	902
SinI	GGWCC	1 cut(s)	784
SmiMI	CAYNNNNRTG	2 cut(s)	862, 872
SphI	GCATGC	1 cut(s)	559
Sse9I	AATT	7 cut(s)	104, 126, 240, 471, 512, 572, 823
SsiI	CCGC	5 cut(s)	39, 116, 307, 899, 901
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	4 cut(s)	84, 465, 723, 774
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	3 cut(s)	73, 144, 697
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	2 cut(s)	91, 428
TasI	AATT	7 cut(s)	104, 126, 240, 471, 512, 572, 823
TfiI	GAWTC	2 cut(s)	78, 149
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	2 cut(s)	624, 874
TseI	GCWGC	3 cut(s)	313, 433, 667
TspDTI	ATGAA	2 cut(s)	535, 552
TspRI	CASTG	2 cut(s)	624, 874
VneI	GTGCAC	1 cut(s)	865
VpaK11BI	GGWCC	1 cut(s)	784
XapI	RAATTY	3 cut(s)	104, 126, 240
XceI	RCATGY	2 cut(s)	559, 861
XspI	CTAG	4 cut(s)	84, 465, 723, 774
ZraI	GACGTC	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.