Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

12861843 .. 12864843

Gene Structure 3001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCTGCTGCTTTCTCTCTCTACTTCTCCTCCTCCTCCCCTCCTCTTCCCCCTTCCTCCAAATCCCTGATCCCTCGCACCTCCTCCTCCCATGGCAGCAGACGCCTCTCCCTCCCCGGATTCCCCTCCTCCTCCCGCCCCCACCGAGTCTCATGTTCTTCTTCTTCCGATAAATCCTCCCCCGGCGCCGATAACGTTCCCAGCTCTTTTTGCATCATAGAGGGGCCGGAGACGGTGCAGGACTTTGTTCAGATGCAGCTGCAGGAGATTCAGGACAATATAAGGAGCAGAAGGAACAAGATTTTTCTGCTCATGGAAGAGCTGAGGAGATTGCGGGTGCAGCACCGGATAAAGATGGCCAAGGATTTCAATGAGAGTGGTGAGGAAGAGTCCAACGAGATGCCTGACATTCCTTCGTCTATCCCTTTTCTCCCTTATGTGACACCAAAGACGTTGAAGCAACTCTACCTTACTAGCGCAACATTCATATCTGGCATTATTGTATTTGGGGGCCTTATTGCACCAACACTGGAACTCAAATTAGGCATAGGAGGTACCTCTTATGAAGATTTCATTCGCAGCATGCATTTGCCCATGCAATTAAGTCAGGTTGATCCCATTGTGGCATCCTTTTCAGGCGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAACAATGTTGAGCAACAAGAGAAGAAAAGGTGCAAGTATTGCCATGGAACTGGGTACTTGGCCTGTGCTAGATGTTCTGCAAGTGGTGTATGCTTGAGCATCAGTCCCATATCACTATCTAATGCATCTGACAGCCCTTTGCGAGTGCCCACAACTGAGAGGTGTCCAAATTGCTCTGGTGCTGGAAAGGTAATGTGCCCAACATGTCTCTGCACCGGGATGATGATGGCCAGTGAGCATGACCCACGGATAGATCCATTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

34.19

Weight (kDa)

7.51

Isoelectric Point (pI)

70.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	554
AccB1I	GGYRCC	2 cut(s)	185, 554
AciI	CCGC	3 cut(s)	136, 334, 639
AclI	AACGTT	1 cut(s)	195
AclWI	GGATC	3 cut(s)	64, 608, 929
AcoI	YGGCCR	2 cut(s)	357, 909
AcyI	GRCGYC	2 cut(s)	103, 186
AfaI	GTAC	2 cut(s)	556, 737
AflIII	ACRYGT	1 cut(s)	884
AgsI	TTSAA	3 cut(s)	370, 457, 677
AluBI	AGCT	4 cut(s)	204, 259, 322, 680
AluI	AGCT	4 cut(s)	204, 259, 322, 680
Alw26I	GTCTC	3 cut(s)	154, 224, 893
AlwI	GGATC	3 cut(s)	64, 608, 929
AoxI	GGCC	5 cut(s)	224, 357, 511, 741, 909
ApeKI	GCWGC	7 cut(s)	5, 8, 96, 256, 259, 340, 579
Asp718I	GGTACC	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	188, 479
AspS9I	GGNCC	2 cut(s)	224, 511
AsuC2I	CCSGG	3 cut(s)	117, 183, 898
AsuHPI	GGTGA	1 cut(s)	392
BaeGI	GKGCMC	2 cut(s)	831, 881
BalI	TGGCCA	2 cut(s)	359, 911
BanI	GGYRCC	2 cut(s)	185, 554
BarI	GAAGNNNNNNTAC	2 cut(s)	449, 481
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	5 cut(s)	108, 246, 268, 352, 591
BccI	CCATC	2 cut(s)	349, 901
BcnI	CCSGG	3 cut(s)	117, 183, 898
BcoDI	GTCTC	3 cut(s)	154, 224, 893
BfaI	CTAG	2 cut(s)	474, 750
BfmI	CTRYAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	7 cut(s)	6, 9, 97, 257, 260, 341, 580
BlsI	GCNGC	7 cut(s)	7, 10, 98, 258, 261, 342, 581
Bme1390I	CCNGG	3 cut(s)	117, 183, 898
BmgT120I	GGNCC	2 cut(s)	224, 511
BmiI	GGNNCC	4 cut(s)	187, 225, 512, 556
BmrFI	CCNGG	3 cut(s)	117, 183, 898
BmrI	ACTGGG	1 cut(s)	741
BmsI	GCATC	6 cut(s)	222, 243, 390, 635, 789, 815
BmuI	ACTGGG	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	796
BpuMI	CCSGG	3 cut(s)	117, 183, 898
BsaHI	GRCGYC	2 cut(s)	103, 186
BsaJI	CCNNGG	6 cut(s)	91, 115, 181, 360, 724, 926
BsaWI	WCCGGW	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse1I	ACTGG	3 cut(s)	534, 736, 912
BseDI	CCNNGG	6 cut(s)	91, 115, 181, 360, 724, 926
BseGI	GGATG	2 cut(s)	626, 906
BseMII	CTCAG	2 cut(s)	314, 828
BseNI	ACTGG	3 cut(s)	534, 736, 912
BseRI	GAGGAG	9 cut(s)	19, 22, 25, 33, 73, 76, 118, 121, 340
BseSI	GKGCMC	2 cut(s)	831, 881
BseXI	GCAGC	5 cut(s)	108, 246, 268, 352, 591
BseYI	CCCAGC	1 cut(s)	200
BsgI	GTGCAG	3 cut(s)	257, 359, 877
BshFI	GGCC	5 cut(s)	226, 359, 513, 743, 911
BshNI	GGYRCC	2 cut(s)	185, 554
BsiSI	CCGG	5 cut(s)	117, 183, 227, 346, 897
BslFI	GGGAC	1 cut(s)	771
BsmAI	GTCTC	3 cut(s)	154, 224, 893
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	771
BsnI	GGCC	5 cut(s)	226, 359, 513, 743, 911
Bsp1286I	GDGCHC	2 cut(s)	831, 881
Bsp143I	GATC	3 cut(s)	69, 613, 934
Bsp19I	CCATGG	2 cut(s)	91, 724
BspACI	CCGC	3 cut(s)	136, 334, 639
BspANI	GGCC	5 cut(s)	226, 359, 513, 743, 911
BspCNI	CTCAG	2 cut(s)	315, 829
BspLI	GGNNCC	4 cut(s)	187, 225, 512, 556
BspMAI	CTGCAG	1 cut(s)	264
BspPI	GGATC	3 cut(s)	64, 608, 929
BspQI	GCTCTTC	1 cut(s)	312
BspT107I	GGYRCC	2 cut(s)	185, 554
BsrI	ACTGG	3 cut(s)	534, 736, 912
BssECI	CCNNGG	6 cut(s)	91, 115, 181, 360, 724, 926
BssMI	GATC	3 cut(s)	69, 613, 934
BssNI	GRCGYC	2 cut(s)	103, 186
BssT1I	CCWWGG	3 cut(s)	91, 360, 724
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	3 cut(s)	51, 312, 381
BstACI	GRCGYC	2 cut(s)	103, 186
BstAPI	GCANNNNNTGC	1 cut(s)	720
BstC8I	GCNNGC	1 cut(s)	584
BstDEI	CTNAG	2 cut(s)	323, 837
BstDSI	CCRYGG	3 cut(s)	91, 724, 926
BstF5I	GGATG	2 cut(s)	626, 906
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 479
BstKTI	GATC	3 cut(s)	72, 616, 937
BstMAI	GTCTC	3 cut(s)	154, 224, 893
BstMBI	GATC	3 cut(s)	69, 613, 934
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 210, 340, 720
BstNSI	RCATGY	2 cut(s)	586, 888
BstSCI	CCNGG	3 cut(s)	115, 181, 896
BstSFI	CTRYAG	1 cut(s)	260
BstSLI	GKGCMC	2 cut(s)	831, 881
BstV1I	GCAGC	5 cut(s)	108, 246, 268, 352, 591
BstX2I	RGATCY	1 cut(s)	934
BstXI	CCANNNNNNTGG	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	934
BsuRI	GGCC	5 cut(s)	226, 359, 513, 743, 911
BtgI	CCRYGG	3 cut(s)	91, 724, 926
BtsCI	GGATG	2 cut(s)	626, 906
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	527, 651, 919
Cac8I	GCNNGC	1 cut(s)	584
CfoI	GCGC	2 cut(s)	188, 479
Cfr13I	GGNCC	2 cut(s)	224, 511
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	555, 736
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	8 cut(s)	92, 153, 313, 583, 595, 725, 885, 920
CviQI	GTAC	2 cut(s)	555, 736
DdeI	CTNAG	2 cut(s)	323, 837
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	3 cut(s)	71, 615, 936
DpnII	GATC	3 cut(s)	69, 613, 934
EaeI	YGGCCR	2 cut(s)	357, 909
Eam1104I	CTCTTC	3 cut(s)	51, 312, 381
EarI	CTCTTC	3 cut(s)	51, 312, 381
Eco130I	CCWWGG	3 cut(s)	91, 360, 724
EcoO109I	RGGNCCY	1 cut(s)	511
EcoT14I	CCWWGG	3 cut(s)	91, 360, 724
EcoT22I	ATGCAT	2 cut(s)	588, 808
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	3 cut(s)	91, 360, 724
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	8 cut(s)	95, 156, 316, 586, 598, 728, 888, 923
FaqI	GGGAC	1 cut(s)	771
FatI	CATG	8 cut(s)	91, 152, 312, 582, 594, 724, 884, 919
FauI	CCCGC	3 cut(s)	143, 327, 632
Fnu4HI	GCNGC	7 cut(s)	6, 9, 97, 257, 260, 341, 580
FokI	GGATG	2 cut(s)	613, 913
Fsp4HI	GCNGC	7 cut(s)	6, 9, 97, 257, 260, 341, 580
FspBI	CTAG	2 cut(s)	474, 750
GlaI	GCGC	2 cut(s)	187, 478
GluI	GCNGC	7 cut(s)	6, 9, 97, 257, 260, 341, 580
GsaI	CCCAGC	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	5 cut(s)	226, 359, 513, 743, 911
HapII	CCGG	5 cut(s)	117, 183, 227, 346, 897
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	2 cut(s)	188, 479
Hin1I	GRCGYC	2 cut(s)	103, 186
Hin1II	CATG	8 cut(s)	95, 156, 316, 586, 598, 728, 888, 923
Hin6I	GCGC	2 cut(s)	186, 477
HinP1I	GCGC	2 cut(s)	186, 477
HinfI	GANTC	4 cut(s)	120, 147, 268, 389
HpaII	CCGG	5 cut(s)	117, 183, 227, 346, 897
HphI	GGTGA	1 cut(s)	392
Hpy188I	TCNGA	3 cut(s)	169, 252, 811
Hpy188III	TCNNGA	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	63, 285, 423
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	195, 452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 210, 340, 720
HpyF3I	CTNAG	2 cut(s)	323, 837
HpySE526I	ACGT	2 cut(s)	195, 452
Hsp92I	GRCGYC	2 cut(s)	103, 186
Hsp92II	CATG	8 cut(s)	95, 156, 316, 586, 598, 728, 888, 923
HspAI	GCGC	2 cut(s)	186, 477
KasI	GGCGCC	1 cut(s)	185
KpnI	GGTACC	1 cut(s)	558
Kzo9I	GATC	3 cut(s)	69, 613, 934
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	5 cut(s)	108, 246, 268, 352, 591
LweI	GCATC	6 cut(s)	222, 243, 390, 635, 789, 815
MaeI	CTAG	2 cut(s)	474, 750
MaeII	ACGT	2 cut(s)	195, 452
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	71, 615, 936
MboI	GATC	3 cut(s)	69, 613, 934
MboII	GAAGA	8 cut(s)	38, 150, 153, 156, 329, 398, 578, 715
MflI	RGATCY	1 cut(s)	934
MhlI	GDGCHC	2 cut(s)	831, 881
MlsI	TGGCCA	2 cut(s)	359, 911
MluCI	AATT	3 cut(s)	539, 599, 850
MluNI	TGGCCA	2 cut(s)	359, 911
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	2 cut(s)	156, 398
MmeI	TCCRAC	1 cut(s)	417
Mox20I	TGGCCA	2 cut(s)	359, 911
Mph1103I	ATGCAT	2 cut(s)	588, 808
MscI	TGGCCA	2 cut(s)	359, 911
MseI	TTAA	1 cut(s)	602
MslI	CAYNNNNRTG	1 cut(s)	899
Msp20I	TGGCCA	2 cut(s)	359, 911
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	5 cut(s)	117, 183, 227, 346, 897
MspR9I	CCNGG	3 cut(s)	117, 183, 898
MwoI	GCNNNNNNNGC	4 cut(s)	102, 210, 340, 720
NarI	GGCGCC	1 cut(s)	186
NciI	CCSGG	3 cut(s)	117, 183, 898
NcoI	CCATGG	2 cut(s)	91, 724
NdeII	GATC	3 cut(s)	69, 613, 934
NlaIII	CATG	8 cut(s)	95, 156, 316, 586, 598, 728, 888, 923
NlaIV	GGNNCC	4 cut(s)	187, 225, 512, 556
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	2 cut(s)	588, 808
NspI	RCATGY	2 cut(s)	586, 888
PaeI	GCATGC	1 cut(s)	586
PciI	ACATGT	1 cut(s)	884
PciSI	GCTCTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	120, 268
PkrI	GCNGC	7 cut(s)	7, 10, 98, 258, 261, 342, 581
PleI	GAGTC	2 cut(s)	155, 397
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	2 cut(s)	155, 397
PscI	ACATGT	1 cut(s)	884
Psp1406I	AACGTT	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	200
PspN4I	GGNNCC	4 cut(s)	187, 225, 512, 556
PspPI	GGNCC	2 cut(s)	224, 511
PstI	CTGCAG	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	934
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	556, 737
RsaNI	GTAC	2 cut(s)	555, 736
RseI	CAYNNNNRTG	1 cut(s)	899
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	7 cut(s)	6, 9, 97, 257, 260, 341, 580
Sau3AI	GATC	3 cut(s)	69, 613, 934
Sau96I	GGNCC	2 cut(s)	224, 511
SchI	GAGTC	2 cut(s)	156, 398
ScrFI	CCNGG	3 cut(s)	117, 183, 898
SduI	GDGCHC	2 cut(s)	831, 881
SfaNI	GCATC	6 cut(s)	222, 243, 390, 635, 789, 815
SfcI	CTRYAG	1 cut(s)	260
SfoI	GGCGCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	899
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
SphI	GCATGC	1 cut(s)	586
Sse9I	AATT	3 cut(s)	539, 599, 850
SsiI	CCGC	3 cut(s)	136, 334, 639
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	2 cut(s)	474, 750
StyD4I	CCNGG	3 cut(s)	115, 181, 896
StyI	CCWWGG	3 cut(s)	91, 360, 724
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	198, 455
TasI	AATT	3 cut(s)	539, 599, 850
TfiI	GAWTC	2 cut(s)	120, 268
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	3 cut(s)	534, 651, 919
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	7 cut(s)	5, 8, 96, 256, 259, 340, 579
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	475, 562, 579
TspGWI	ACGGA	1 cut(s)	943
TspRI	CASTG	3 cut(s)	534, 651, 919
XceI	RCATGY	2 cut(s)	586, 888
XspI	CTAG	2 cut(s)	474, 750
Zsp2I	ATGCAT	2 cut(s)	588, 808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.