Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

2492565 .. 2495453

Gene Structure 2889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTTCTTTCTCACTCACTTCTCATCCTCCCCCTTCCTCCAAAACCCTACTTCCCTCCTCCATCTCCTCCCATGGAATCCCTAGACGTCTCTCTCTGTCCAAATTCACCTCCCCGCGTCCCCAAATTTCCTGTTCTGCTTCCAAGGAATCATCCCCCGGCGATAACACGCCAAGCACCTTTTGTATCATAGAAGGGCCGGAGACGGTACAGGACTTTGTGCAGATGCAACTGCAGGAAATTCAGGACAACATAAGAAGCCGGCGCAACAAGATTTTTCTTCTCATGGAAGAGGTGAAAACAGAAAACTCAAAAGTGAGATTGCGGGTGCAGCACCGGATGAGGATGGCGAAAGATATGGATGAGGCTTGTGAGGAAGAGTCAACTGAGATGCCTGACATTCCATCCACTATCCCTTTTCTCCCTCATATGACACCAAAGACATTGAAGCAGCTCTACCTCACAAGCTTATCCATGATATCTAGTGTAATTGTATTTGGGGGTCTCATTGCACCATCGCTGGAACTAAAATTAGGTATAGGAGGTACCTCGTATGAAGATTTCATTCGTAGCATGCATCTGCCTTTACAATTAAGTCAGGTTGATCCTATTGTGGCATCCTTCTCCGGTGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAACAATGTTGAGCAGCAAGAGAAGAAAAGGTGCAAATATTGCCATGGAACTGGGTACTTGGCCTGTGCTAGATGTTCTGCAAGTGGAGCGTGCTTGAACATCAATCCTATATCAGCATCTAGTGCATCGGACCGCCCTTTGCGAGTGCCCACAACTGAGAGGTGCCCAAATTGCTCTGGTGCTGGAAAGGTCATGTGCCCGACGTGCCTGTGCACTGGGATGATGATGGCAAGCGAGCATGACCCGCGGATTGATCCATTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

34.07

Weight (kDa)

7.01

Isoelectric Point (pI)

64.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	91
Acc65I	GGTACC	1 cut(s)	545
AccB1I	GGYRCC	2 cut(s)	545, 834
AccII	CGCG	2 cut(s)	118, 919
AciI	CCGC	5 cut(s)	116, 325, 805, 917, 919
AclWI	GGATC	2 cut(s)	599, 920
AcsI	RAATTY	3 cut(s)	104, 126, 240
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	3 cut(s)	210, 547, 728
AgsI	TTSAA	3 cut(s)	448, 668, 769
AjiI	CACGTC	1 cut(s)	876
AluBI	AGCT	3 cut(s)	454, 468, 671
AluI	AGCT	3 cut(s)	454, 468, 671
Alw21I	GWGCWC	1 cut(s)	887
Alw26I	GTCTC	3 cut(s)	95, 197, 509
Alw44I	GTGCAC	1 cut(s)	883
AlwI	GGATC	2 cut(s)	599, 920
AoxI	GGCC	2 cut(s)	197, 732
ApaLI	GTGCAC	1 cut(s)	883
ApeKI	GCWGC	3 cut(s)	331, 451, 685
ApoI	RAATTY	3 cut(s)	104, 126, 240
Asp718I	GGTACC	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	197, 802
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	100, 307
AvaII	GGWCC	1 cut(s)	802
BaeGI	GKGCMC	4 cut(s)	822, 839, 872, 887
BanI	GGYRCC	2 cut(s)	545, 834
BarI	GAAGNNNNNNTAC	2 cut(s)	440, 472
Bbv12I	GWGCWC	1 cut(s)	887
BbvI	GCAGC	3 cut(s)	343, 463, 697
BccI	CCATC	5 cut(s)	71, 340, 412, 523, 892
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	3 cut(s)	95, 197, 509
BfaI	CTAG	4 cut(s)	84, 483, 741, 792
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	3 cut(s)	332, 452, 686
BlsI	GCNGC	3 cut(s)	333, 453, 687
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	802
BmgBI	CACGTC	1 cut(s)	876
BmgT120I	GGNCC	2 cut(s)	197, 802
BmiI	GGNNCC	2 cut(s)	547, 836
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	2 cut(s)	732, 897
BmsI	GCATC	6 cut(s)	216, 381, 586, 626, 797, 806
BmuI	ACTGGG	2 cut(s)	732, 897
BpuMI	CCSGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	5 cut(s)	73, 144, 157, 715, 917
BsaWI	WCCGGW	2 cut(s)	336, 626
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	2 cut(s)	727, 892
Bse3DI	GCAATG	1 cut(s)	507
BseDI	CCNNGG	5 cut(s)	73, 144, 157, 715, 917
BseGI	GGATG	8 cut(s)	25, 152, 345, 351, 367, 404, 617, 897
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	378, 819
BseNI	ACTGG	2 cut(s)	727, 892
BseRI	GAGGAG	2 cut(s)	49, 58
BseSI	GKGCMC	4 cut(s)	822, 839, 872, 887
BseXI	GCAGC	3 cut(s)	343, 463, 697
BsgI	GTGCAG	2 cut(s)	242, 350
Bsh1236I	CGCG	2 cut(s)	118, 919
BshFI	GGCC	2 cut(s)	199, 734
BshNI	GGYRCC	2 cut(s)	545, 834
BsiHKAI	GWGCWC	1 cut(s)	887
BsiSI	CCGG	5 cut(s)	159, 200, 262, 337, 627
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	3 cut(s)	95, 197, 509
BsmBI	CGTCTC	2 cut(s)	95, 197
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	199, 734
Bso31I	GGTCTC	1 cut(s)	509
Bsp1286I	GDGCHC	4 cut(s)	822, 839, 872, 887
Bsp143I	GATC	2 cut(s)	604, 925
Bsp19I	CCATGG	2 cut(s)	73, 715
BspACI	CCGC	5 cut(s)	116, 325, 805, 917, 919
BspANI	GGCC	2 cut(s)	199, 734
BspCNI	CTCAG	2 cut(s)	379, 820
BspFNI	CGCG	2 cut(s)	118, 919
BspLI	GGNNCC	2 cut(s)	547, 836
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	2 cut(s)	599, 920
BspT107I	GGYRCC	2 cut(s)	545, 834
BspTNI	GGTCTC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	727, 892
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	5 cut(s)	73, 144, 157, 715, 917
BssMI	GATC	2 cut(s)	604, 925
BssNI	GRCGYC	1 cut(s)	88
BssT1I	CCWWGG	3 cut(s)	73, 144, 715
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	285, 372
BstACI	GRCGYC	1 cut(s)	88
BstAPI	GCANNNNNTGC	2 cut(s)	711, 794
BstC8I	GCNNGC	5 cut(s)	263, 575, 763, 904, 908
BstDEI	CTNAG	2 cut(s)	387, 828
BstDSI	CCRYGG	3 cut(s)	73, 715, 917
BstF5I	GGATG	8 cut(s)	25, 152, 345, 351, 367, 404, 617, 897
BstFNI	CGCG	2 cut(s)	118, 919
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	607, 928
BstMAI	GTCTC	3 cut(s)	95, 197, 509
BstMBI	GATC	2 cut(s)	604, 925
BstMWI	GCNNNNNNNGC	7 cut(s)	331, 711, 758, 794, 843, 876, 916
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	4 cut(s)	822, 839, 872, 887
BstUI	CGCG	2 cut(s)	118, 919
BstV1I	GCAGC	3 cut(s)	343, 463, 697
BstXI	CCANNNNNNTGG	1 cut(s)	722
BsuRI	GGCC	2 cut(s)	199, 734
BtgI	CCRYGG	3 cut(s)	73, 715, 917
BtgZI	GCGATG	1 cut(s)	501
BtrI	CACGTC	1 cut(s)	876
BtsCI	GGATG	8 cut(s)	25, 152, 345, 351, 367, 404, 617, 897
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	642, 885
Cac8I	GCNNGC	5 cut(s)	263, 575, 763, 904, 908
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	197, 802
Cfr42I	CCGCGG	1 cut(s)	920
CpoI	CGGWCCG	1 cut(s)	802
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	209, 546, 727
CspI	CGGWCCG	1 cut(s)	802
CviAII	CATG	7 cut(s)	74, 286, 475, 574, 716, 865, 911
CviJI	RGCY	8 cut(s)	5, 199, 261, 368, 454, 468, 671, 734
CviKI_1	RGCY	8 cut(s)	5, 199, 261, 368, 454, 468, 671, 734
CviQI	GTAC	3 cut(s)	209, 546, 727
DdeI	CTNAG	2 cut(s)	387, 828
DpnI	GATC	2 cut(s)	606, 927
DpnII	GATC	2 cut(s)	604, 925
Eam1104I	CTCTTC	2 cut(s)	285, 372
EarI	CTCTTC	2 cut(s)	285, 372
Eco130I	CCWWGG	3 cut(s)	73, 144, 715
Eco31I	GGTCTC	1 cut(s)	509
Eco32I	GATATC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	802
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	3 cut(s)	73, 144, 715
EcoT22I	ATGCAT	1 cut(s)	579
ErhI	CCWWGG	3 cut(s)	73, 144, 715
Esp3I	CGTCTC	2 cut(s)	95, 197
FaeI	CATG	7 cut(s)	77, 289, 478, 577, 719, 868, 914
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	7 cut(s)	73, 285, 474, 573, 715, 864, 910
FauI	CCCGC	3 cut(s)	123, 318, 924
FauNDI	CATATG	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	332, 452, 686
FokI	GGATG	8 cut(s)	12, 139, 352, 358, 374, 391, 604, 904
Fsp4HI	GCNGC	3 cut(s)	332, 452, 686
FspBI	CTAG	4 cut(s)	84, 483, 741, 792
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	3 cut(s)	332, 452, 686
HaeIII	GGCC	2 cut(s)	199, 734
HapII	CCGG	5 cut(s)	159, 200, 262, 337, 627
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	7 cut(s)	77, 289, 478, 577, 719, 868, 914
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HindIII	AAGCTT	1 cut(s)	466
HinfI	GANTC	3 cut(s)	78, 149, 380
HpaII	CCGG	5 cut(s)	159, 200, 262, 337, 627
HphI	GGTGA	2 cut(s)	100, 307
Hpy166II	GTNNAC	2 cut(s)	384, 885
Hpy188I	TCNGA	1 cut(s)	802
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	2 cut(s)	384, 885
Hpy99I	CGWCG	1 cut(s)	877
HpyAV	CCTTC	3 cut(s)	45, 188, 631
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	88, 875
HpyF10VI	GCNNNNNNNGC	7 cut(s)	331, 711, 758, 794, 843, 876, 916
HpyF3I	CTNAG	2 cut(s)	387, 828
HpySE526I	ACGT	2 cut(s)	88, 875
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	7 cut(s)	77, 289, 478, 577, 719, 868, 914
HspAI	GCGC	1 cut(s)	265
KpnI	GGTACC	1 cut(s)	549
KroI	GCCGGC	1 cut(s)	261
KroNI	GCCGGC	1 cut(s)	263
KspI	CCGCGG	1 cut(s)	920
Kzo9I	GATC	2 cut(s)	604, 925
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	3 cut(s)	343, 463, 697
LweI	GCATC	6 cut(s)	216, 381, 586, 626, 797, 806
MaeI	CTAG	4 cut(s)	84, 483, 741, 792
MaeII	ACGT	2 cut(s)	88, 875
MalI	GATC	2 cut(s)	606, 927
MboI	GATC	2 cut(s)	604, 925
MboII	GAAGA	5 cut(s)	272, 302, 389, 569, 706
MhlI	GDGCHC	4 cut(s)	822, 839, 872, 887
MluCI	AATT	7 cut(s)	104, 126, 240, 489, 530, 590, 841
MlyI	GAGTC	1 cut(s)	389
Mph1103I	ATGCAT	1 cut(s)	579
MroNI	GCCGGC	1 cut(s)	261
MseI	TTAA	1 cut(s)	593
MslI	CAYNNNNRTG	1 cut(s)	890
MspA1I	CMGCKG	1 cut(s)	919
MspI	CCGG	5 cut(s)	159, 200, 262, 337, 627
MspR9I	CCNGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	118, 919
MwoI	GCNNNNNNNGC	7 cut(s)	331, 711, 758, 794, 843, 876, 916
NaeI	GCCGGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	2 cut(s)	73, 715
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	2 cut(s)	604, 925
NgoMIV	GCCGGC	1 cut(s)	261
NlaIII	CATG	7 cut(s)	77, 289, 478, 577, 719, 868, 914
NlaIV	GGNNCC	2 cut(s)	547, 836
NsiI	ATGCAT	1 cut(s)	579
NspI	RCATGY	1 cut(s)	577
PaeI	GCATGC	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	78, 149
PkrI	GCNGC	3 cut(s)	333, 453, 687
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	547, 836
PspPI	GGNCC	2 cut(s)	197, 802
PstI	CTGCAG	1 cut(s)	237
RsaI	GTAC	3 cut(s)	210, 547, 728
RsaNI	GTAC	3 cut(s)	209, 546, 727
RseI	CAYNNNNRTG	1 cut(s)	890
Rsr2I	CGGWCCG	1 cut(s)	802
RsrII	CGGWCCG	1 cut(s)	802
SacII	CCGCGG	1 cut(s)	920
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	3 cut(s)	332, 452, 686
Sau3AI	GATC	2 cut(s)	604, 925
Sau96I	GGNCC	2 cut(s)	197, 802
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	4 cut(s)	822, 839, 872, 887
SfaNI	GCATC	6 cut(s)	216, 381, 586, 626, 797, 806
SfcI	CTRYAG	1 cut(s)	233
Sfr303I	CCGCGG	1 cut(s)	920
SgrBI	CCGCGG	1 cut(s)	920
SinI	GGWCC	1 cut(s)	802
SmiMI	CAYNNNNRTG	1 cut(s)	890
SphI	GCATGC	1 cut(s)	577
Sse9I	AATT	7 cut(s)	104, 126, 240, 489, 530, 590, 841
SsiI	CCGC	5 cut(s)	116, 325, 805, 917, 919
SspI	AATATT	1 cut(s)	710
SspMI	CTAG	4 cut(s)	84, 483, 741, 792
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	3 cut(s)	73, 144, 715
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	2 cut(s)	91, 878
TasI	AATT	7 cut(s)	104, 126, 240, 489, 530, 590, 841
TfiI	GAWTC	2 cut(s)	78, 149
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	2 cut(s)	642, 892
TseI	GCWGC	3 cut(s)	331, 451, 685
TspDTI	ATGAA	2 cut(s)	553, 570
TspRI	CASTG	2 cut(s)	642, 892
VneI	GTGCAC	1 cut(s)	883
VpaK11BI	GGWCC	1 cut(s)	802
XapI	RAATTY	3 cut(s)	104, 126, 240
XceI	RCATGY	1 cut(s)	577
XspI	CTAG	4 cut(s)	84, 483, 741, 792
ZraI	GACGTC	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.