Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Forward (+)

29611231 .. 29614558

Gene Structure 3328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCTGCTTTCTCTCTCTCCTCCTCCCCTCCTCCTCCTCCTCCTCCTCTCTCCCTAATTCCTCGCACCTCCTCCTCCCATGGCAGCAGACGCCTCCCCCTCTCCAAATTCGCCTCCTCGTCGCGCCCCAGAGTCTCCTGTTCCTCTTCTTCTGAGAAATCCTCCCCCGGCGGCGATAACATTCCCAGCTCTTTTTGTATCATAGAGGGGCCGGAGACGGTGCAGGACTTTGTTCAGATGCAGCTGCAGGAAATTCAGGACAACATAAGGAGTAGGCGGAACAAGATTTTTCTGCTCATGGAAGAGCTGAGGAGATTGCGGGTGCAACACCGGATAAAGATGGCGAAGGATTTCGATGAGAGTGGTGAGGAAGAGTCCGATGAGATGCCTGACATTCCATCATCCATCCCTTTTCTCCCTTCTGTGACACCAAAGACTTTGAAGCAACTCTACCTCACAAGTGCAACATTTATATCTGGGATAATTGTATTTGGGGGCCTTATTGCACCGACGCTGGAACTTAAATTAGGCATAGGAGGTACCTCGTATGAAGATTTCATTCGCAGCATGCATTTGCCCATGCAATTAAGCCAGGTTGATCCCATTGTGGCATCCTTTTCGGGTGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAACAATGTTGAGCAACAAGAGAAGAAAAGGTGCAAGTATTGCCATGGAACTGGGTATTTGGCCTGTGCTAGATGTTCTGCAAGTGGTGTATGCTTGAGCATCAATCCTATATCAGTATCTAATGCATCTGACCGCCCTTTGCGAGTGCCCACAACTCGGAGGTGTTTAAATTGCTCTGGTGCTGGAAAGGTAATGTGCCCAACATGTCTGTGCACCGGGATGATGATGGCGAGCGAGCATGACCCACGGATAGATCCATTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

33.69

Weight (kDa)

7.96

Isoelectric Point (pI)

71.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	539
AccII	CGCG	1 cut(s)	124
AciI	CCGC	4 cut(s)	171, 277, 319, 799
AclWI	GGATC	2 cut(s)	593, 914
AcsI	RAATTY	2 cut(s)	107, 252
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	822
AflIII	ACRYGT	1 cut(s)	869
AgsI	TTSAA	2 cut(s)	442, 662
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	4 cut(s)	189, 244, 307, 665
AluI	AGCT	4 cut(s)	189, 244, 307, 665
Alw21I	GWGCWC	1 cut(s)	881
Alw26I	GTCTC	2 cut(s)	139, 209
Alw44I	GTGCAC	1 cut(s)	877
AlwI	GGATC	2 cut(s)	593, 914
AoxI	GGCC	3 cut(s)	209, 496, 726
ApaLI	GTGCAC	1 cut(s)	877
ApeKI	GCWGC	5 cut(s)	5, 84, 241, 244, 564
ApoI	RAATTY	2 cut(s)	107, 252
Asp700I	GAANNNNTTC	1 cut(s)	350
Asp718I	GGTACC	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	209, 496
AsuC2I	CCSGG	2 cut(s)	168, 883
AsuHPI	GGTGA	1 cut(s)	377
BaeGI	GKGCMC	3 cut(s)	816, 866, 881
BanI	GGYRCC	1 cut(s)	539
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
Bbv12I	GWGCWC	1 cut(s)	881
BbvCI	CCTCAGC	1 cut(s)	308
BbvI	GCAGC	4 cut(s)	96, 231, 253, 576
BccI	CCATC	4 cut(s)	334, 406, 413, 886
BcgI	CGANNNNNNTGC	2 cut(s)	600, 634
BciT130I	CCWGG	1 cut(s)	593
BcnI	CCSGG	2 cut(s)	168, 883
BcoDI	GTCTC	2 cut(s)	139, 209
BfaI	CTAG	1 cut(s)	735
BfmI	CTRYAG	1 cut(s)	245
BisI	GCNGC	6 cut(s)	6, 85, 172, 242, 245, 565
BlsI	GCNGC	6 cut(s)	7, 86, 173, 243, 246, 566
Bme1390I	CCNGG	3 cut(s)	168, 593, 883
BmgT120I	GGNCC	2 cut(s)	209, 496
BmiI	GGNNCC	3 cut(s)	210, 497, 541
BmrFI	CCNGG	3 cut(s)	168, 593, 883
BmrI	ACTGGG	1 cut(s)	726
BmsI	GCATC	5 cut(s)	228, 375, 620, 774, 800
BmuI	ACTGGG	1 cut(s)	726
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	781
BpuMI	CCSGG	2 cut(s)	168, 883
BsaHI	GRCGYC	1 cut(s)	91
BsaJI	CCNNGG	4 cut(s)	79, 166, 709, 911
BsaWI	WCCGGW	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	1 cut(s)	822
Bse1I	ACTGG	1 cut(s)	721
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	4 cut(s)	79, 166, 709, 911
BseGI	GGATG	4 cut(s)	401, 405, 611, 891
BseLI	CCNNNNNNNGG	1 cut(s)	822
BseMII	CTCAG	2 cut(s)	144, 299
BseNI	ACTGG	1 cut(s)	721
BseSI	GKGCMC	3 cut(s)	816, 866, 881
BseXI	GCAGC	4 cut(s)	96, 231, 253, 576
BseYI	CCCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	211, 498, 728
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	881
BsiSI	CCGG	4 cut(s)	168, 212, 331, 882
BslI	CCNNNNNNNGG	1 cut(s)	822
BsmAI	GTCTC	2 cut(s)	139, 209
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	3 cut(s)	211, 498, 728
Bsp1286I	GDGCHC	3 cut(s)	816, 866, 881
Bsp143I	GATC	2 cut(s)	598, 919
Bsp19I	CCATGG	2 cut(s)	79, 709
BspACI	CCGC	4 cut(s)	171, 277, 319, 799
BspANI	GGCC	3 cut(s)	211, 498, 728
BspCNI	CTCAG	2 cut(s)	145, 300
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	210, 497, 541
BspMAI	CTGCAG	1 cut(s)	249
BspPI	GGATC	2 cut(s)	593, 914
BspQI	GCTCTTC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	721
BssECI	CCNNGG	4 cut(s)	79, 166, 709, 911
BssMI	GATC	2 cut(s)	598, 919
BssNI	GRCGYC	1 cut(s)	91
BssT1I	CCWWGG	2 cut(s)	79, 709
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	3 cut(s)	151, 297, 366
BstACI	GRCGYC	1 cut(s)	91
BstAPI	GCANNNNNTGC	1 cut(s)	705
BstC8I	GCNNGC	3 cut(s)	569, 898, 902
BstDEI	CTNAG	2 cut(s)	153, 308
BstDSI	CCRYGG	3 cut(s)	79, 709, 911
BstF5I	GGATG	4 cut(s)	401, 405, 611, 891
BstFNI	CGCG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	2 cut(s)	601, 922
BstMAI	GTCTC	2 cut(s)	139, 209
BstMBI	GATC	2 cut(s)	598, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 705
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	2 cut(s)	571, 873
BstSCI	CCNGG	3 cut(s)	166, 591, 881
BstSFI	CTRYAG	1 cut(s)	245
BstSLI	GKGCMC	3 cut(s)	816, 866, 881
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	4 cut(s)	96, 231, 253, 576
BstX2I	RGATCY	1 cut(s)	919
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	919
BsuRI	GGCC	3 cut(s)	211, 498, 728
BtgI	CCRYGG	3 cut(s)	79, 709, 911
BtsCI	GGATG	4 cut(s)	401, 405, 611, 891
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	3 cut(s)	569, 898, 902
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	209, 496
CseI	GACGC	2 cut(s)	99, 520
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	7 cut(s)	80, 298, 568, 580, 710, 870, 905
CviJI	RGCY	9 cut(s)	5, 189, 211, 244, 307, 498, 591, 665, 728
CviKI_1	RGCY	9 cut(s)	5, 189, 211, 244, 307, 498, 591, 665, 728
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	2 cut(s)	153, 308
DpnI	GATC	2 cut(s)	600, 921
DpnII	GATC	2 cut(s)	598, 919
DraI	TTTAAA	1 cut(s)	834
Eam1104I	CTCTTC	3 cut(s)	151, 297, 366
EarI	CTCTTC	3 cut(s)	151, 297, 366
EciI	GGCGGA	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	79, 709
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	2 cut(s)	79, 709
EcoT22I	ATGCAT	2 cut(s)	573, 793
ErhI	CCWWGG	2 cut(s)	79, 709
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	7 cut(s)	83, 301, 571, 583, 713, 873, 908
FatI	CATG	7 cut(s)	79, 297, 567, 579, 709, 869, 904
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	6 cut(s)	6, 85, 172, 242, 245, 565
FokI	GGATG	4 cut(s)	388, 392, 598, 898
Fsp4HI	GCNGC	6 cut(s)	6, 85, 172, 242, 245, 565
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	6 cut(s)	6, 85, 172, 242, 245, 565
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	211, 498, 728
HapII	CCGG	4 cut(s)	168, 212, 331, 882
HgaI	GACGC	2 cut(s)	99, 520
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	7 cut(s)	83, 301, 571, 583, 713, 873, 908
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	132, 374
HpaII	CCGG	4 cut(s)	168, 212, 331, 882
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	879
Hpy188I	TCNGA	5 cut(s)	154, 237, 379, 796, 825
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	879
Hpy99I	CGWCG	2 cut(s)	124, 514
HpyAV	CCTTC	2 cut(s)	340, 429
HpyCH4III	ACNGT	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 705
HpyF3I	CTNAG	2 cut(s)	153, 308
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	7 cut(s)	83, 301, 571, 583, 713, 873, 908
HspAI	GCGC	1 cut(s)	124
KpnI	GGTACC	1 cut(s)	543
Kzo9I	GATC	2 cut(s)	598, 919
LguI	GCTCTTC	1 cut(s)	297
Lsp1109I	GCAGC	4 cut(s)	96, 231, 253, 576
LweI	GCATC	5 cut(s)	228, 375, 620, 774, 800
MaeI	CTAG	1 cut(s)	735
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	2 cut(s)	600, 921
MboI	GATC	2 cut(s)	598, 919
MboII	GAAGA	6 cut(s)	138, 141, 314, 383, 563, 700
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	3 cut(s)	816, 866, 881
MluCI	AATT	7 cut(s)	57, 107, 252, 483, 524, 584, 835
MlyI	GAGTC	2 cut(s)	141, 383
Mph1103I	ATGCAT	2 cut(s)	573, 793
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	3 cut(s)	522, 587, 833
MslI	CAYNNNNRTG	2 cut(s)	874, 884
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	4 cut(s)	168, 212, 331, 882
MspR9I	CCNGG	3 cut(s)	168, 593, 883
MvaI	CCWGG	1 cut(s)	593
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	90, 705
NciI	CCSGG	2 cut(s)	168, 883
NcoI	CCATGG	2 cut(s)	79, 709
NdeII	GATC	2 cut(s)	598, 919
NlaIII	CATG	7 cut(s)	83, 301, 571, 583, 713, 873, 908
NlaIV	GGNNCC	3 cut(s)	210, 497, 541
NmuCI	GTSAC	1 cut(s)	424
NsiI	ATGCAT	2 cut(s)	573, 793
NspI	RCATGY	2 cut(s)	571, 873
PaeI	GCATGC	1 cut(s)	571
PciI	ACATGT	1 cut(s)	869
PciSI	GCTCTTC	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	350
PkrI	GCNGC	6 cut(s)	7, 86, 173, 243, 246, 566
PleI	GAGTC	2 cut(s)	140, 382
PpsI	GAGTC	2 cut(s)	140, 382
PscI	ACATGT	1 cut(s)	869
Psp6I	CCWGG	1 cut(s)	591
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	210, 497, 541
PspPI	GGNCC	2 cut(s)	209, 496
PstI	CTGCAG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	919
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
RseI	CAYNNNNRTG	2 cut(s)	874, 884
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	522, 587, 833
SatI	GCNGC	6 cut(s)	6, 85, 172, 242, 245, 565
Sau3AI	GATC	2 cut(s)	598, 919
Sau96I	GGNCC	2 cut(s)	209, 496
SchI	GAGTC	2 cut(s)	141, 383
ScrFI	CCNGG	3 cut(s)	168, 593, 883
SduI	GDGCHC	3 cut(s)	816, 866, 881
SfaNI	GCATC	5 cut(s)	228, 375, 620, 774, 800
SfcI	CTRYAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	2 cut(s)	874, 884
SmlI	CTYRAG	1 cut(s)	760
SmoI	CTYRAG	1 cut(s)	760
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	7 cut(s)	57, 107, 252, 483, 524, 584, 835
SsiI	CCGC	4 cut(s)	171, 277, 319, 799
SspMI	CTAG	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	166, 591, 881
StyI	CCWWGG	2 cut(s)	79, 709
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	354
TasI	AATT	7 cut(s)	57, 107, 252, 483, 524, 584, 835
TauI	GCSGC	1 cut(s)	174
Tru1I	TTAA	3 cut(s)	522, 587, 833
Tru9I	TTAA	3 cut(s)	522, 587, 833
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	5 cut(s)	5, 84, 241, 244, 564
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	547, 564
TspGWI	ACGGA	1 cut(s)	928
TspRI	CASTG	1 cut(s)	636
VneI	GTGCAC	1 cut(s)	877
XapI	RAATTY	2 cut(s)	107, 252
XceI	RCATGY	2 cut(s)	571, 873
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	1 cut(s)	735
Zsp2I	ATGCAT	2 cut(s)	573, 793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.