Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

30416503 .. 30417138

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1252400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAAGAGCTAAGGAGATTGCGGGTGCAGCAACGGATAAAGATGGCGAGAGATATGGATGAGGCTTGTGAGGAAGAGTCAAATGAGATGCCTGACATTCCATCCACTATCCCTTTTCTCCCTCATATGACACCAAAGACGTTGAAGCAGCTCTACCTCACAAGCTTATCTATGATATCTAGTGTAATTGTATTTGGGGGTCTCATTGCGCCATCGTTGGAACTAAAATTAGGTATAGGAGGTACCTCGTATGAAGATTTCATTCGTAGCATGCATCTGCCTTTACAATTAAGTCAGGTTGATCCTATTGTGGCATCCTTCTCCGGTGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAATAATGTTGAGCAGCAAGAGAAGAAAAGGTGCAAATATTGCCATGGAACTGGGTACTTGGCCTGTGCTAGATGTTCTGCAAGTGGAGTGTGCTTGAACATCAATCCTATATCAGCATCTAGTGCATCAGACCAACCTTTGCGAGTGCCCACAACTGAGAGGTGCCCAAATTGCTCTGGTGCTGGAAAGGTCATGTGCCCGACATGCCTGTGCACTGGGATGATGATGGCAAGCGAGCATGACCCGCGGATTGATCCATTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

22.99

Weight (kDa)

5.61

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	2 cut(s)	242, 531
AccII	CGCG	1 cut(s)	616
AciI	CCGC	3 cut(s)	22, 614, 616
AclWI	GGATC	2 cut(s)	296, 617
AfaI	GTAC	2 cut(s)	244, 425
AgsI	TTSAA	3 cut(s)	145, 365, 466
AluBI	AGCT	4 cut(s)	10, 151, 165, 368
AluI	AGCT	4 cut(s)	10, 151, 165, 368
Alw21I	GWGCWC	1 cut(s)	584
Alw26I	GTCTC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	580
AlwI	GGATC	2 cut(s)	296, 617
AoxI	GGCC	1 cut(s)	429
ApaLI	GTGCAC	1 cut(s)	580
ApeKI	GCWGC	3 cut(s)	28, 148, 382
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	211
BaeGI	GKGCMC	4 cut(s)	519, 536, 569, 584
BanI	GGYRCC	2 cut(s)	242, 531
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
Bbv12I	GWGCWC	1 cut(s)	584
BbvI	GCAGC	3 cut(s)	40, 160, 394
BccI	CCATC	4 cut(s)	37, 109, 220, 589
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	3 cut(s)	180, 438, 489
BisI	GCNGC	3 cut(s)	29, 149, 383
BlsI	GCNGC	3 cut(s)	30, 150, 384
BmiI	GGNNCC	2 cut(s)	244, 533
BmrI	ACTGGG	2 cut(s)	429, 594
BmsI	GCATC	5 cut(s)	78, 283, 323, 494, 503
BmuI	ACTGGG	2 cut(s)	429, 594
Bpu10I	CCTNAGC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	412, 614
BsaWI	WCCGGW	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	424, 589
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	412, 614
BseGI	GGATG	4 cut(s)	64, 101, 314, 594
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	424, 589
BseSI	GKGCMC	4 cut(s)	519, 536, 569, 584
BseXI	GCAGC	3 cut(s)	40, 160, 394
BsgI	GTGCAG	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	616
BshFI	GGCC	1 cut(s)	431
BshNI	GGYRCC	2 cut(s)	242, 531
BsiHKAI	GWGCWC	1 cut(s)	584
BsiSI	CCGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	431
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	4 cut(s)	519, 536, 569, 584
Bsp143I	GATC	2 cut(s)	301, 622
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	3 cut(s)	22, 614, 616
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	616
BspLI	GGNNCC	2 cut(s)	244, 533
BspPI	GGATC	2 cut(s)	296, 617
BspT107I	GGYRCC	2 cut(s)	242, 531
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	424, 589
BssECI	CCNNGG	2 cut(s)	412, 614
BssMI	GATC	2 cut(s)	301, 622
BssT1I	CCWWGG	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	2 cut(s)	408, 491
BstC8I	GCNNGC	3 cut(s)	272, 601, 605
BstDEI	CTNAG	2 cut(s)	11, 525
BstDSI	CCRYGG	2 cut(s)	412, 614
BstF5I	GGATG	4 cut(s)	64, 101, 314, 594
BstFNI	CGCG	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	2 cut(s)	304, 625
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	301, 622
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 408, 491, 540, 573, 613
BstNSI	RCATGY	2 cut(s)	274, 576
BstSLI	GKGCMC	4 cut(s)	519, 536, 569, 584
BstUI	CGCG	1 cut(s)	616
BstV1I	GCAGC	3 cut(s)	40, 160, 394
BstXI	CCANNNNNNTGG	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	431
BtgI	CCRYGG	2 cut(s)	412, 614
BtsCI	GGATG	4 cut(s)	64, 101, 314, 594
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	339, 582
Cac8I	GCNNGC	3 cut(s)	272, 601, 605
CfoI	GCGC	1 cut(s)	211
Cfr42I	CCGCGG	1 cut(s)	617
Csp6I	GTAC	2 cut(s)	243, 424
CviAII	CATG	5 cut(s)	271, 413, 562, 573, 608
CviJI	RGCY	6 cut(s)	10, 65, 151, 165, 368, 431
CviKI_1	RGCY	6 cut(s)	10, 65, 151, 165, 368, 431
CviQI	GTAC	2 cut(s)	243, 424
DdeI	CTNAG	2 cut(s)	11, 525
DpnI	GATC	2 cut(s)	303, 624
DpnII	GATC	2 cut(s)	301, 622
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	412
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	5 cut(s)	274, 416, 565, 576, 611
FatI	CATG	5 cut(s)	270, 412, 561, 572, 607
FauI	CCCGC	2 cut(s)	15, 621
FauNDI	CATATG	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	29, 149, 383
FokI	GGATG	4 cut(s)	71, 88, 301, 601
Fsp4HI	GCNGC	3 cut(s)	29, 149, 383
FspBI	CTAG	3 cut(s)	180, 438, 489
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	3 cut(s)	29, 149, 383
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	5 cut(s)	274, 416, 565, 576, 611
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	324
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	1 cut(s)	499
Hpy8I	GTNNAC	1 cut(s)	582
HpyAV	CCTTC	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	6 cut(s)	28, 274, 402, 449, 494, 582
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 408, 491, 540, 573, 613
HpyF3I	CTNAG	2 cut(s)	11, 525
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	5 cut(s)	274, 416, 565, 576, 611
HspAI	GCGC	1 cut(s)	209
KpnI	GGTACC	1 cut(s)	246
KspI	CCGCGG	1 cut(s)	617
Kzo9I	GATC	2 cut(s)	301, 622
LpnPI	CCDG	9 cut(s)	105, 281, 337, 405, 445, 531, 537, 570, 590
Lsp1109I	GCAGC	3 cut(s)	40, 160, 394
LweI	GCATC	5 cut(s)	78, 283, 323, 494, 503
MaeI	CTAG	3 cut(s)	180, 438, 489
MaeII	ACGT	1 cut(s)	140
MalI	GATC	2 cut(s)	303, 624
MboI	GATC	2 cut(s)	301, 622
MboII	GAAGA	4 cut(s)	17, 86, 266, 403
MhlI	GDGCHC	4 cut(s)	519, 536, 569, 584
MluCI	AATT	4 cut(s)	186, 227, 287, 538
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	7 cut(s)	55, 64, 132, 167, 233, 256, 522
Mph1103I	ATGCAT	1 cut(s)	276
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	2 cut(s)	577, 587
MspA1I	CMGCKG	1 cut(s)	616
MspI	CCGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	616
MwoI	GCNNNNNNNGC	6 cut(s)	28, 408, 491, 540, 573, 613
NcoI	CCATGG	1 cut(s)	412
NdeI	CATATG	1 cut(s)	126
NdeII	GATC	2 cut(s)	301, 622
NlaIII	CATG	5 cut(s)	274, 416, 565, 576, 611
NlaIV	GGNNCC	2 cut(s)	244, 533
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	2 cut(s)	274, 576
PaeI	GCATGC	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	30, 150, 384
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	244, 533
RsaI	GTAC	2 cut(s)	244, 425
RsaNI	GTAC	2 cut(s)	243, 424
RseI	CAYNNNNRTG	2 cut(s)	577, 587
SacII	CCGCGG	1 cut(s)	617
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	3 cut(s)	29, 149, 383
Sau3AI	GATC	2 cut(s)	301, 622
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	4 cut(s)	519, 536, 569, 584
SfaNI	GCATC	5 cut(s)	78, 283, 323, 494, 503
Sfr303I	CCGCGG	1 cut(s)	617
SgrBI	CCGCGG	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	577, 587
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	4 cut(s)	186, 227, 287, 538
SsiI	CCGC	3 cut(s)	22, 614, 616
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	3 cut(s)	180, 438, 489
StyI	CCWWGG	1 cut(s)	412
TaiI	ACGT	1 cut(s)	143
TasI	AATT	4 cut(s)	186, 227, 287, 538
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	2 cut(s)	339, 589
TseI	GCWGC	3 cut(s)	28, 148, 382
TspDTI	ATGAA	2 cut(s)	250, 267
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	2 cut(s)	339, 589
VneI	GTGCAC	1 cut(s)	580
XceI	RCATGY	2 cut(s)	274, 576
XspI	CTAG	3 cut(s)	180, 438, 489
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.